+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Akanthomyces muscarius
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E LMH87_011341 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E LMH87_011373 hypothetical protein K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E LMH87_004572 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E LMH87_008813 uncharacterized protein K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50]
D Cap binding complex
E LMH87_004296 hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
E LMH87_009851 hypothetical protein K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E LMH87_008838 uncharacterized protein K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
D Pre-mRNA cleavage factor IIm (CFIIm)
E LMH87_003528 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E LMH87_006844 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E LMH87_004252 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E LMH87_010106 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E LMH87_005989 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E LMH87_008048 uncharacterized protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E LMH87_004045 hypothetical protein K15541 MPE1; protein MPE1
E LMH87_007454 hypothetical protein K15542 PFS2; polyadenylation factor subunit 2
E LMH87_011977 hypothetical protein K14962 WDR82; COMPASS component SWD2
E LMH87_006134 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E LMH87_003559 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E LMH87_006062 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E LMH87_003745 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E LMH87_005578 hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E LMH87_003924 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E LMH87_005054 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E LMH87_007301 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E LMH87_008768 uncharacterized protein K11097 SNRPE; small nuclear ribonucleoprotein E
E LMH87_004844 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
E LMH87_006490 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
E LMH87_004252 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E LMH87_010106 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E LMH87_003745 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E LMH87_003924 hypothetical protein K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E LMH87_004596 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E LMH87_005355 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E LMH87_009227 uncharacterized protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
D Poly(A) addition factors
E LMH87_008166 uncharacterized protein K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
C Other processing factors
D LMH87_004595 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D LMH87_005078 hypothetical protein K27103 SRRT; serrate RNA effector molecule
D LMH87_012118 hypothetical protein K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E LMH87_006858 hypothetical protein K12876 RBM8A; RNA-binding protein 8A
E LMH87_001003 hypothetical protein K12877 MAGOH; protein mago nashi
E LMH87_000281 hypothetical protein K12881 THOC4; THO complex subunit 4
E LMH87_004973 hypothetical protein K12881 THOC4; THO complex subunit 4
E LMH87_002508 hypothetical protein K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E LMH87_002963 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E LMH87_000595 hypothetical protein K25178 CCDC174; coiled-coil domain-containing protein 174
E LMH87_003489 hypothetical protein K14324 SAP18; histone deacetylase complex subunit SAP18
E LMH87_010435 hypothetical protein K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E LMH87_005069 hypothetical protein K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E LMH87_009742 hypothetical protein K12878 THOC1; THO complex subunit 1
E LMH87_010031 hypothetical protein K12879 THOC2; THO complex subunit 2
E LMH87_012105 hypothetical protein K12880 THOC3; THO complex subunit 3
E LMH87_000281 hypothetical protein K12881 THOC4; THO complex subunit 4
E LMH87_004973 hypothetical protein K12881 THOC4; THO complex subunit 4
E LMH87_005036 hypothetical protein K13174 THOC5; THO complex subunit 5
D TREX-2 complex
E LMH87_006185 hypothetical protein K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E LMH87_001288 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E LMH87_011391 hypothetical protein K16466 CETN3; centrin-3
E LMH87_002732 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E LMH87_003344 hypothetical protein K09291 TPR; nucleoprotein TPR
E LMH87_007901 uncharacterized protein K14298 RAE1; mRNA export factor
E LMH87_000558 hypothetical protein K14004 SEC13; protein transport protein SEC13
E LMH87_010384 hypothetical protein K14308 NUP54; nuclear pore complex protein Nup54
E LMH87_004961 hypothetical protein K14306 NUP62; nuclear pore complex protein Nup62
E LMH87_010200 hypothetical protein K14309 NUP93; nuclear pore complex protein Nup93
E LMH87_011392 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E LMH87_011611 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E LMH87_004707 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E LMH87_011677 hypothetical protein K14311 NUP188; nuclear pore complex protein Nup188
E LMH87_010008 hypothetical protein K14312 NUP155; nuclear pore complex protein Nup155
E LMH87_009882 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E LMH87_008047 uncharacterized protein K14307 NUPL1; nucleoporin p58/p45
E LMH87_008603 uncharacterized protein K14315 NDC1; nucleoporin NDC1
E LMH87_008709 uncharacterized protein K14299 SEH1; nucleoporin SEH1
E LMH87_003741 hypothetical protein K18715 NUP159; nucleoporin NUP159
E LMH87_005427 hypothetical protein K18716 NUP42; nucleoporin NUP42
E LMH87_009850 hypothetical protein K18719 NUP82; nucleoporin NUP82
E LMH87_011391 hypothetical protein K16466 CETN3; centrin-3
E LMH87_002430 hypothetical protein K18723 GLE1; nucleoporin GLE1
E LMH87_005138 hypothetical protein K14284 NXF; nuclear RNA export factor
E LMH87_003022 hypothetical protein K14285 NXT1_2; NTF2-related export protein 1/2
E LMH87_002712 hypothetical protein K18724 POM34; nucleoporin POM34
E LMH87_005843 hypothetical protein K18725 POM152; nucleoporin POM152
D Ran-mediated transport factors
E LMH87_007177 hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran
E LMH87_005066 hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran
E LMH87_001925 hypothetical protein K18726 FAF2; FAS-associated factor 2
E LMH87_011694 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase
E LMH87_000424 hypothetical protein K14290 XPO1; exportin-1
E LMH87_007245 hypothetical protein K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E LMH87_002469 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E LMH87_006765 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E LMH87_001959 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E LMH87_003657 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E LMH87_009746 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E LMH87_008734 uncharacterized protein K03258 EIF4B; translation initiation factor 4B
E LMH87_002342 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E LMH87_002543 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E LMH87_008030 uncharacterized protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E LMH87_009071 uncharacterized protein K13126 PABPC; polyadenylate-binding protein
E LMH87_001666 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E LMH87_006343 hypothetical protein K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6]
E LMH87_001114 hypothetical protein K07575 MCTS; malignant T-cell-amplified sequence
E LMH87_007220 hypothetical protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E LMH87_011509 hypothetical protein K14294 WIBG; partner of Y14 and mago
E LMH87_011762 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E LMH87_010966 hypothetical protein K14416 HBS1; elongation factor 1 alpha-like protein
E LMH87_003128 hypothetical protein K06965 PELO; protein pelota
E LMH87_011769 hypothetical protein K14396 PABPN1; polyadenylate-binding protein 2
E LMH87_007800 uncharacterized protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E LMH87_000633 hypothetical protein K12867 SYF1; pre-mRNA-splicing factor SYF1
E LMH87_004732 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E LMH87_004308 hypothetical protein K11493 RCC1; regulator of chromosome condensation
E LMH87_011164 hypothetical protein K11493 RCC1; regulator of chromosome condensation
E LMH87_010545 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E LMH87_008863 uncharacterized protein K03265 ETF1; peptide chain release factor subunit 1
E LMH87_011406 hypothetical protein K03267 ERF3; peptide chain release factor subunit 3
E LMH87_000867 hypothetical protein K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E LMH87_006986 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E LMH87_011056 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E LMH87_006323 hypothetical protein K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E LMH87_009733 hypothetical protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E LMH87_012028 hypothetical protein K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E LMH87_003054 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E LMH87_008030 uncharacterized protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E LMH87_010665 hypothetical protein K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E LMH87_007226 hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E LMH87_008535 uncharacterized protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E LMH87_005598 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E LMH87_004528 hypothetical protein K10357 MYO5; myosin V
E LMH87_001497 hypothetical protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
E LMH87_007718 uncharacterized protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E LMH87_011923 hypothetical protein K13210 FUBP; far upstream element-binding protein
E LMH87_002091 hypothetical protein K03231 EEF1A; elongation factor 1-alpha
E LMH87_006721 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
E LMH87_004603 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
E LMH87_007862 uncharacterized protein K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E LMH87_002431 hypothetical protein K18748 SSD1; protein SSD1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E LMH87_002480 hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E LMH87_005577 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E LMH87_002469 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E LMH87_006765 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E LMH87_000867 hypothetical protein K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E LMH87_002342 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E LMH87_002543 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E LMH87_004650 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E LMH87_008642 uncharacterized protein K18749 LSM14; protein LSM14
E LMH87_004459 hypothetical protein K18752 TNPO1; transportin-1
E LMH87_002251 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E LMH87_003535 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E LMH87_011631 hypothetical protein K18757 LARP1; la-related protein 1
D P-body specific factors
E LMH87_011974 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E LMH87_008589 uncharacterized protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E LMH87_003716 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E LMH87_010666 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E LMH87_006935 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E LMH87_002526 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E LMH87_005590 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E LMH87_001931 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E LMH87_005216 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E LMH87_004528 hypothetical protein K10357 MYO5; myosin V
E LMH87_003928 hypothetical protein K07374 TUBA; tubulin alpha
E LMH87_011262 hypothetical protein K07374 TUBA; tubulin alpha
E LMH87_011378 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E LMH87_006209 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E LMH87_000214 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E LMH87_000620 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E LMH87_007376 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E LMH87_009692 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E LMH87_011409 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E LMH87_001930 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E LMH87_012267 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E LMH87_011689 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E LMH87_006986 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E LMH87_011056 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
E LMH87_011479 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
D Stress granule specific factors
E LMH87_009752 hypothetical protein K13201 TIA1; nucleolysin TIA-1/TIAR
E LMH87_009071 uncharacterized protein K13126 PABPC; polyadenylate-binding protein
E LMH87_003623 hypothetical protein K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E LMH87_005858 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E LMH87_010177 hypothetical protein K03253 EIF3B; translation initiation factor 3 subunit B
E LMH87_001959 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E LMH87_003657 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E LMH87_002963 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E LMH87_008734 uncharacterized protein K03258 EIF4B; translation initiation factor 4B
E LMH87_009746 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E LMH87_000981 hypothetical protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E LMH87_005138 hypothetical protein K14284 NXF; nuclear RNA export factor
E LMH87_011989 hypothetical protein K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E LMH87_011974 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E LMH87_004650 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E LMH87_011689 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E LMH87_012267 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E LMH87_008589 uncharacterized protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E LMH87_003716 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E LMH87_010666 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E LMH87_006935 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E LMH87_002526 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E LMH87_005590 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E LMH87_001931 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E LMH87_005216 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E LMH87_002480 hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E LMH87_009797 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D Other 5'-3' decay factors
E LMH87_006319 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
C 3'-5' decay
D Core exosome factors
E LMH87_002789 hypothetical protein K07573 CSL4; exosome complex component CSL4
E LMH87_004713 hypothetical protein K03679 RRP4; exosome complex component RRP4
E LMH87_002143 hypothetical protein K03681 RRP40; exosome complex component RRP40
E LMH87_003062 hypothetical protein K11600 RRP41; exosome complex component RRP41
E LMH87_005062 hypothetical protein K12590 RRP46; exosome complex component RRP46
E LMH87_000643 hypothetical protein K12587 MTR3; exosome complex component MTR3
E LMH87_008584 uncharacterized protein K12589 RRP42; exosome complex component RRP42
E LMH87_004317 hypothetical protein K12586 RRP43; exosome complex component RRP43
E LMH87_009873 hypothetical protein K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E LMH87_011523 hypothetical protein K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E LMH87_005449 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E LMH87_001997 hypothetical protein K12592 C1D; exosome complex protein LRP1
E LMH87_011933 hypothetical protein K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E LMH87_011161 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E LMH87_003242 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E LMH87_001666 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E LMH87_005660 hypothetical protein K12600 SKI3; superkiller protein 3
E LMH87_000455 hypothetical protein K12601 SKI8; superkiller protein 8
D Ccr4-NOT complex
E LMH87_007376 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E LMH87_011378 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E LMH87_006209 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E LMH87_000214 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E LMH87_000620 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E LMH87_009692 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E LMH87_000584 hypothetical protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E LMH87_004349 hypothetical protein K12608 CAF16; CCR4-NOT complex subunit CAF16
E LMH87_004983 hypothetical protein K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120
D Pan complex
E LMH87_011409 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E LMH87_001930 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E LMH87_006319 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E LMH87_003639 hypothetical protein K26109 NRDE2; nuclear exosome regulator NRDE2
E LMH87_008177 uncharacterized protein K27407 VTS1; RNA-binding protein VTS1
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E LMH87_007536 uncharacterized protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E LMH87_004451 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E LMH87_007719 uncharacterized protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E LMH87_009019 uncharacterized protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Helicases
D Other RNA degradosome components
E LMH87_012054 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E LMH87_004305 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E LMH87_006238 hypothetical protein K04043 dnaK; molecular chaperone DnaK
E LMH87_011546 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E LMH87_004713 hypothetical protein K03679 RRP4; exosome complex component RRP4
E LMH87_002789 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Cofactors
E LMH87_003062 hypothetical protein K11600 RRP41; exosome complex component RRP41
E LMH87_008584 uncharacterized protein K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024