+F Repair protein KO
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DNA Repair and Recombination Proteins - Anaeromyxobacter sp. K
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AnaeK_1031 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AnaeK_0106 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AnaeK_3125 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AnaeK_4084 Uracil-DNA glycosylase superfamily protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AnaeK_4364 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E AnaeK_1928 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AnaeK_3680 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D AnaeK_1183 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AnaeK_2065 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AnaeK_2201 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AnaeK_2689 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AnaeK_1168 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AnaeK_1031 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AnaeK_0106 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AnaeK_3125 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D AnaeK_1863 2OG-Fe(II) oxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E AnaeK_4084 Uracil-DNA glycosylase superfamily protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AnaeK_2690 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E AnaeK_1494 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E AnaeK_3689 Uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E AnaeK_1032 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E AnaeK_4364 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E AnaeK_1928 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AnaeK_1724 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AnaeK_0288 DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AnaeK_4038 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AnaeK_1787 DNA-(apurinic or apyrimidinic site) lyase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E AnaeK_3680 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AnaeK_0459 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E AnaeK_1106 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E AnaeK_1313 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E AnaeK_0728 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E AnaeK_2550 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AnaeK_1187 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E AnaeK_2586 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E AnaeK_2582 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E AnaeK_0104 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AnaeK_3456 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AnaeK_2052 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AnaeK_0874 superfamily I DNA and RNA helicase-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AnaeK_2550 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E AnaeK_0728 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F AnaeK_2271 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F AnaeK_2270 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F AnaeK_1960 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F AnaeK_3657 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F AnaeK_4468 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AnaeK_2157 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E AnaeK_1441 Smr protein/MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E AnaeK_2133 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E AnaeK_1153 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E AnaeK_1154 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E AnaeK_3525 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E AnaeK_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E AnaeK_2547 DNA polymerase III delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E AnaeK_2548 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E AnaeK_0816 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AnaeK_3752 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AnaeK_3695 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E AnaeK_0728 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E AnaeK_0104 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AnaeK_3456 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AnaeK_2052 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AnaeK_0874 superfamily I DNA and RNA helicase-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AnaeK_3865 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E AnaeK_4075 recA protein K03553 recA; recombination protein RecA
E AnaeK_3687 recA protein K03553 recA; recombination protein RecA
E AnaeK_1013 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AnaeK_1014 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AnaeK_1012 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E AnaeK_0764 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E AnaeK_0467 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AnaeK_0468 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
E AnaeK_1575 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E AnaeK_4075 recA protein K03553 recA; recombination protein RecA
E AnaeK_3687 recA protein K03553 recA; recombination protein RecA
E AnaeK_3538 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E AnaeK_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E AnaeK_2120 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AnaeK_1313 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E AnaeK_2557 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E AnaeK_3693 recombination protein RecR K06187 recR; recombination protein RecR
E AnaeK_0769 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E AnaeK_1759 conserved hypothetical protein K03554 rdgC; recombination associated protein RdgC
E AnaeK_1758 conserved hypothetical protein K03554 rdgC; recombination associated protein RdgC
E AnaeK_1013 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AnaeK_1014 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AnaeK_1012 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E AnaeK_0784 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E AnaeK_0467 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AnaeK_0468 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
E AnaeK_1575 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
E AnaeK_0096 protein of unknown function DUF853 NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E AnaeK_1024 Ku protein K10979 ku; DNA end-binding protein Ku
E AnaeK_0832 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E AnaeK_0932 DNA ligase D, 3'-phosphoesterase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E AnaeK_1023 DNA polymerase LigD, polymerase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F AnaeK_4482 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F AnaeK_0004 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F AnaeK_2792 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F AnaeK_3038 type I topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F AnaeK_4335 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F AnaeK_2379 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F AnaeK_1313 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F AnaeK_2557 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F AnaeK_3693 recombination protein RecR K06187 recR; recombination protein RecR
F AnaeK_0728 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F AnaeK_3848 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F AnaeK_1909 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F AnaeK_0733 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta
E Supressor
F AnaeK_0884 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AnaeK_1187 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F AnaeK_2586 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D AnaeK_0148 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D AnaeK_4075 recA protein K03553 recA; recombination protein RecA
D AnaeK_3687 recA protein K03553 recA; recombination protein RecA
D AnaeK_2148 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D AnaeK_0769 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D AnaeK_2250 conserved hypothetical protein K14160 imuA; protein ImuA
D AnaeK_2249 conserved hypothetical protein K14161 imuB; protein ImuB
D AnaeK_2248 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D AnaeK_3865 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D AnaeK_3449 putative RecX protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D AnaeK_1288 PHP domain protein K02347 polX; DNA polymerase (family X)
C DNA helicases
D AnaeK_4459 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D AnaeK_1786 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D AnaeK_3982 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D AnaeK_1183 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AnaeK_2065 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AnaeK_2201 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AnaeK_2689 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AnaeK_1168 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AnaeK_1374 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AnaeK_2247 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024