+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Anastrepha obliqua (West Indian fruit fly)

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors E 129237568 mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] E 129237305 mRNA-capping enzyme isoform X1 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] E 129237411 cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E 129239175 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] E 129244832 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296] E 129242696 RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein D Cap binding complex E 129237584 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1 E 129240195 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2 C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) E 129242481 cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 E 129241996 cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 D Pre-mRNA cleavage factor IIm (CFIIm) E 129241948 protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] D Cleavage and polyadenylation specificity factor (CPSF) complex E 129244447 cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 E 129249383 probable cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E 129238545 cleavage and polyadenylation specificity factor 73 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E 129245157 cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E 129250188 pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 E 129245515 pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2 E 129247542 WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2 E 129236061 serine/threonine-protein phosphatase alpha-1 isoform K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 129237918 serine/threonine-protein phosphatase beta isoform isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 129245322 serine/threonine-protein phosphatase alpha-2 isoform K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 129236910 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] D Cleavage stimulation factor (CSTF) complex E 129235661 cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1 E 129238631 cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2 E 129238833 protein suppressor of forked K14408 CSTF3; cleavage stimulation factor subunit 3 E 129235482 symplekin K06100 SYMPK; symplekin D U7-dependent histone pre-mRNA processing factors E 129237691 small nuclear ribonucleoprotein-associated protein B K11086 SNRPB; small nuclear ribonucleoprotein B and B' E 129243489 small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3 E 129242502 probable small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E E 129237966 small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F E 129236912 probable small nuclear ribonucleoprotein G isoform X1 K11099 SNRPG; small nuclear ribonucleoprotein G E 129244783 U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10 E 129245513 U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 E 129249383 probable cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E 129238545 cleavage and polyadenylation specificity factor 73 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E 129238631 cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2 E 129235482 symplekin K06100 SYMPK; symplekin E 129249984 histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein D DRB sensitivity inducing factor (DSIF) complex E 129244700 transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4 E 129244970 transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5 D N6-methyltransferase complex E 129243959 N6-adenosine-methyltransferase MT-A70-like protein K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] E 129249100 N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit E 129245302 N(6)-adenine-specific methyltransferase METTL4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] E 129246379 U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] E 129244531 pre-mRNA-splicing regulator female-lethal(2)D K22824 WTAP; pre-mRNA-splicing regulator WTAP E 129246328 protein virilizer K22910 VIRMA; protein virilizer E 129244525 RNA-binding protein spenito K13190 RBM15; RNA-binding protein 15 E 129247653 E3 ubiquitin-protein ligase Hakai K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] D Poly(A) addition factors E 129243703 poly(A) polymerase type 3-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19] E 129244101 poly(A) polymerase type 3-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19] E 129244315 poly(A) polymerase type 3-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19] D Negative regulators of mRNA 3' end processing E 129247137 zinc finger protein swm K13192 RBM26; RNA-binding protein 26 E 129244949 TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43 C Other processing factors D 129242771 DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17 D 129240623 methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] D 129242494 methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] D 129244840 terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19] D 129243378 serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule B mRNA surveillance and transport factors C Transport factors D EJC complex E 129244560 RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A E 129244864 protein mago nashi K12877 MAGOH; protein mago nashi E 129253049 THO complex subunit 4 K12881 THOC4; THO complex subunit 4 E 129248052 ATP-dependent RNA helicase WM6 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] E 129236206 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E 129249861 coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174 E 129253025 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18 E 129247346 pinin isoform X1 K13114 PNN; pinin E 129247641 apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus E 129249658 RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1 D TREX complex E 129235974 THO complex subunit 1 K12878 THOC1; THO complex subunit 1 E 129249405 THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2 E 129253348 THO complex subunit 3 K12880 THOC3; THO complex subunit 3 E 129253049 THO complex subunit 4 K12881 THOC4; THO complex subunit 4 E 129248381 THO complex subunit 5 K13174 THOC5; THO complex subunit 5 E 129241689 THO complex subunit 6 isoform X1 K13175 THOC6; THO complex subunit 6 E 129236398 THO complex protein 7 K13176 THOC7; THO complex subunit 7 D TREX-2 complex E 129237258 PCI domain-containing protein 2 homolog K23801 PCID2; nuclear mRNA export protein PCID2/THP1 E 129247610 probable 26S proteasome complex subunit sem1 K10881 SHFM1; 26 proteasome complex subunit DSS1 E 129249193 enhancer of yellow 2 transcription factor K11368 ENY2; enhancer of yellow 2 transcription factor D Nuclear pore complex E 129246459 nucleoprotein TPR K09291 TPR; nucleoprotein TPR E 129245564 protein Rae1 K14298 RAE1; mRNA export factor E 129236350 protein SEC13 homolog K14004 SEC13; protein transport protein SEC13 E 129243481 nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37 E 129243769 nuclear pore complex protein Nup75 K14304 NUP85; nuclear pore complex protein Nup85 E 129247909 nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43 E 129245771 nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50 E 129245360 probable nucleoporin Nup54 K14308 NUP54; nuclear pore complex protein Nup54 E 129245023 nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62 E 129237372 nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88 E 129239563 nuclear pore complex protein Nup93-1-like K14309 NUP93; nuclear pore complex protein Nup93 E 129242086 nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96 E 129246883 nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107 E 129235443 nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133 E 129244034 nucleoporin Nup188 K14311 NUP188; nuclear pore complex protein Nup188 E 129246815 nuclear pore complex protein Nup154 K14312 NUP155; nuclear pore complex protein Nup155 E 129237288 nuclear pore complex protein Nup160 homolog K14303 NUP160; nuclear pore complex protein Nup160 E 129238544 nucleoporin Nup35 K14313 NUP35; nuclear pore complex protein Nup53 E 129237068 nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205 E 129243736 nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210 E 129247027 nuclear pore complex protein Nup58 K14307 NUPL1; nucleoporin p58/p45 E 129247045 nuclear pore complex protein Nup58-like K14307 NUPL1; nucleoporin p58/p45 E 129236481 nucleoporin Ndc1 K14315 NDC1; nucleoporin NDC1 E 129244596 nucleoporin seh1-like K14299 SEH1; nucleoporin SEH1 E 129244673 nucleoporin seh1-like K14299 SEH1; nucleoporin SEH1 E 129235754 E3 SUMO-protein ligase RanBP2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-] E 129239618 aladin K14320 AAAS; aladin E 129248512 uncharacterized protein LOC129248512 K18716 NUP42; nucleoporin NUP42 E 129244004 mRNA export factor Gle1 K18723 GLE1; nucleoporin GLE1 E 129239638 nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor E 129245336 NTF2-related export protein K14285 NXT1_2; NTF2-related export protein 1/2 D Ran-mediated transport factors E 129238915 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran E 129243850 acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D E 129237414 ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 129238183 protein elav isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 129246831 ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 129248316 FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2 E 129243986 transitional endoplasmic reticulum ATPase TER94 isoform X1 K13525 VCP; transitional endoplasmic reticulum ATPase E 129247096 exportin-1 K14290 XPO1; exportin-1 E 129237562 ran-binding protein 16 isoform X1 K18460 XPO7; exportin-7 E 129249300 ran GTPase-activating protein K14319 RANGAP1; Ran GTPase-activating protein 1 D eIF4F and regulatory proteins E 129236369 eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E E 129240507 eukaryotic translation initiation factor 4E1 isoform X1 K03259 EIF4E; translation initiation factor 4E E 129248179 eukaryotic initiation factor 4A-like K03257 EIF4A; translation initiation factor 4A E 129249320 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A E 129244182 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G E 129249816 eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G E 129235553 eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B E 129236837 eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H E 129248322 eukaryotic translation initiation factor 4E-binding protein K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 E 129245589 protein angel K18729 ANGEL; protein angel E 129240543 fragile X messenger ribonucleoprotein 1 homolog isoform X1 K15516 FMR; fragile X mental retardation protein E 129239088 cytoplasmic FMR1-interacting protein K05749 CYFIP; cytoplasmic FMR1 interacting protein E 129236341 cytoplasmic polyadenylation element-binding protein K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 129244645 ATP-dependent RNA helicase bel K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E 129249783 GIGYF family protein Gyf K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein E 129244655 polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein E 129244933 polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 E 129236355 polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 E 129253194 SKI2 subunit of superkiller complex protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] E 129241854 deformed epidermal autoregulatory factor 1 K23041 DEAF1; deformed epidermal autoregulatory factor 1 E 129237949 malignant T-cell-amplified sequence 1 homolog K07575 MCTS; malignant T-cell-amplified sequence E 129239700 density-regulated protein homolog K24272 DENR; density-regulated protein D APOBEC1-ACF complex D Other transport factors E 129242666 partner of Y14 and mago K14294 WIBG; partner of Y14 and mago E 129242992 heterogeneous nuclear ribonucleoprotein 87F-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 129248519 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 129235856 ribonucleoprotein RB97D K14411 MSI; RNA-binding protein Musashi E 129239487 poly(U)-binding-splicing factor PUF60 isoform X1 K14411 MSI; RNA-binding protein Musashi E 129241640 RNA-binding protein Musashi homolog Rbp6 isoform X1 K14411 MSI; RNA-binding protein Musashi E 129248534 ribonucleoprotein RB97D-like isoform X1 K14411 MSI; RNA-binding protein Musashi E 129249225 heterogeneous nuclear ribonucleoprotein 27C K14411 MSI; RNA-binding protein Musashi E 129241724 protein HBS1 K14416 HBS1; elongation factor 1 alpha-like protein E 129240872 protein pelota isoform X1 K06965 PELO; protein pelota E 129243846 polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2 E 129237945 DEAD-box helicase Dbp80 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] E 129245364 pre-mRNA-splicing factor syf1 homolog K12867 SYF1; pre-mRNA-splicing factor SYF1 E 129235524 SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein E 129240073 regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation E 129244575 uncharacterized protein LOC129244575 K18733 LARP6; la-related protein 6 E 129251340 transcriptional activator protein Pur-alpha isoform X1 K21772 PURA; transcriptional activator protein Pur-alpha E 129239087 polymerase delta-interacting protein 3-like K22414 POLDIP3; polymerase delta-interacting protein 3 E 129247103 leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3 C Surveillance factors D Surveillance complex E 129240422 eukaryotic peptide chain release factor subunit 1 isoform X1 K03265 ETF1; peptide chain release factor subunit 1 E 129247189 eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3 E 129237206 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E 129237309 regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2 E 129245845 regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3 D Protein phosphatase 2A E 129249340 serine/threonine-protein phosphatase PP2A K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E 129247545 serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit isoform X1 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A E 129236469 protein phosphatase PP2A 55 kDa regulatory subunit isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 129235909 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 129239576 uncharacterized protein LOC129239576 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 129236257 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' E 129240103 uncharacterized protein LOC129240103 isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' D Other surveillance factors E 129239600 serine/threonine-protein kinase Smg1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 129249467 nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5 E 129240416 telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 129248053 nonsense-mediated mRNA decay factor SMG8 K18734 SMG8; protein SMG8 E 129237171 protein SMG9 K18735 SMG9; protein SMG9 E 129249783 GIGYF family protein Gyf K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein E 129241997 selenocysteine insertion sequence-binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 E 129237283 probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6] E 129243901 GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1 C Factors involved in mRNA localization D Cargo complex E 129239682 protein penguin K14844 PUF6; pumilio homology domain family member 6 E 129246236 unconventional myosin-Va isoform X1 K10357 MYO5; myosin V E 129247095 protein bicaudal D K18739 BICD; protein bicaudal D E 129245821 uncharacterized protein LOC129245821 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 D Factors that have mRNA localization signals E 129236392 actin, indirect flight muscle K05692 ACTB_G1; actin beta/gamma 1 E 129236840 actin-5, muscle-specific K05692 ACTB_G1; actin beta/gamma 1 E 129237415 actin, cytoplasmic A3a K05692 ACTB_G1; actin beta/gamma 1 E 129245919 actin-2, muscle-specific K05692 ACTB_G1; actin beta/gamma 1 E 129252958 actin-3, muscle-specific K05692 ACTB_G1; actin beta/gamma 1 E 129238818 myc protein K04377 MYC; Myc proto-oncogene protein E 129241801 T-box transcription factor TBX6L-like K10180 TBX6; T-box protein 6 E 129242325 T-box transcription factor TBX6-like K10180 TBX6; T-box protein 6 E 129252189 maternal effect protein oskar K18742 OSK; maternal effect protein oskar E 129239509 DNA-binding protein K10 K02524 K10; DNA binding protein (fs(1)K10, female sterile(1)K10) E 129235495 enhancer of split mgamma protein K09090 HESN; hairy and enhancer of split, invertebrate E 129235521 enhancer of split m8 protein-like K09090 HESN; hairy and enhancer of split, invertebrate E 129235618 enhancer of split mbeta protein K09090 HESN; hairy and enhancer of split, invertebrate E 129235641 enhancer of split m7 protein K09090 HESN; hairy and enhancer of split, invertebrate E 129235908 enhancer of split m3 protein K09090 HESN; hairy and enhancer of split, invertebrate E 129236067 enhancer of split mdelta protein K09090 HESN; hairy and enhancer of split, invertebrate E 129237787 protein hairy-like K09090 HESN; hairy and enhancer of split, invertebrate E 129240971 protein hairy isoform X1 K09090 HESN; hairy and enhancer of split, invertebrate E 129244752 protein deadpan K09090 HESN; hairy and enhancer of split, invertebrate E 129253008 enhancer of split m5 protein-like K09090 HESN; hairy and enhancer of split, invertebrate D Trans-acting binding proteins E 129243724 far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein E 129243549 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha E 129253065 elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha E 129246123 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma E 129246408 maternal effect protein staufen K17597 STAU; double-stranded RNA-binding protein Staufen E 129235529 polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1 E 129248551 RNA-binding protein squid isoform X1 K03102 SQD; squid E 129236341 cytoplasmic polyadenylation element-binding protein K02602 CPEB; cytoplasmic polyadenylation element-binding protein D Other mRNA localization factors E 129240543 fragile X messenger ribonucleoprotein 1 homolog isoform X1 K15516 FMR; fragile X mental retardation protein E 129239088 cytoplasmic FMR1-interacting protein K05749 CYFIP; cytoplasmic FMR1 interacting protein E 129240155 uncharacterized protein LOC129240155 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4 E 129240275 caprin homolog K18743 CAPRIN1; caprin-1 E 129249464 CUGBP Elav-like family member 2 isoform X1 K02177 BRU; bruno E 129243413 maternal protein exuperantia K18745 EXU; maternal protein exuperantia E 129240378 Y-box factor homolog K09276 YBX1; Y-box-binding protein 1 E 129249394 protein cup K18746 CUP; protein cup E 129236798 sex-lethal homolog K18747 SXL; protein sex-lethal C mRNA cycle factors D Common to processing body (P body) and stress granule E 129237282 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] E 129242989 protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C E 129243902 protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C E 129236369 eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E E 129240507 eukaryotic translation initiation factor 4E1 isoform X1 K03259 EIF4E; translation initiation factor 4E E 129237206 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E 129244645 ATP-dependent RNA helicase bel K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E 129235862 ATP-dependent RNA helicase me31b K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E 129250012 probable serine/threonine-protein kinase nek3 isoform X1 K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] E 129243031 protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14 E 129240378 Y-box factor homolog K09276 YBX1; Y-box-binding protein 1 E 129239564 LIM domain-containing protein jub K16682 AJUBA; LIM domain-containing protein E 129245671 putative helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] E 129245673 putative helicase mov-10-B.1 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] E 129245674 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] E 129240580 transportin-1 K18752 TNPO1; transportin-1 E 129242092 transportin-1-like K18752 TNPO1; transportin-1 E 129242094 transportin-1-like K18752 TNPO1; transportin-1 E 129239600 serine/threonine-protein kinase Smg1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 129249467 nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5 E 129240416 telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 129237409 protein TIS11 K15308 TTP; tristetraprolin E 129242114 protein lin-28 homolog K18754 LIN28; protein lin-28 E 129241666 uncharacterized protein LOC129241666 K04533 HD; huntingtin E 129247239 protein bicaudal C K18756 BICC1; protein bicaudal C E 129242992 heterogeneous nuclear ribonucleoprotein 87F-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 129248519 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 129246913 cAMP-dependent protein kinase catalytic subunit 1 K04345 PKA; protein kinase A [EC:2.7.11.11] E 129236373 la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1 E 129253172 ataxin-2 homolog K23625 ATXN2_2L; ataxin 2/2L D P-body specific factors E 129244008 mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] E 129246376 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E 129241584 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E 129251188 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E 129248554 uncharacterized protein LOC129248554 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E 129240404 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 129240488 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 129244748 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E 129248781 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E 129242554 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 E 129240227 kinesin light chain isoform X1 K10407 KLC; kinesin light chain E 129246236 unconventional myosin-Va isoform X1 K10357 MYO5; myosin V E 129235370 tubulin alpha-1D chain isoform X1 K07374 TUBA; tubulin alpha E 129241670 tubulin alpha-4 chain K07374 TUBA; tubulin alpha E 129245536 tubulin alpha-1 chain K07374 TUBA; tubulin alpha E 129236341 cytoplasmic polyadenylation element-binding protein K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 129249775 protein Gawky isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein E 129244982 CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E 129247528 regulator of gene activity isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E 129246954 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3 E 129240496 GATA zinc finger domain-containing protein 14 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E 129235667 CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 129243011 CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 129243873 PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] E 129241991 PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 E 129237333 protein Tob1 isoform X1 K14443 TOB; protein Tob/BTG E 129247026 protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 E 129242874 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3 E 129245666 enhancer of mRNA-decapping protein 4 homolog isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4 E 129246829 enhancer of mRNA-decapping protein 4 homolog isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4 E 129237309 regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2 E 129245845 regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3 E 129243580 protein wech-like K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] E 129243581 protein wech-like K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] E 129244093 protein wech-like K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] E 129244094 protein wech-like K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] E 129249057 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 E 129248239 YTH domain-containing family protein K20102 YTHDF; YTH domain-containing family protein D Stress granule specific factors E 129235425 nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR E 129237628 cytotoxic granule associated RNA binding protein TIA1-like K13201 TIA1; nucleolysin TIA-1/TIAR E 129252955 cytotoxic granule associated RNA binding protein TIA1 K13201 TIA1; nucleolysin TIA-1/TIAR E 129244655 polyadenylate-binding protein K13126 PABPC; polyadenylate-binding protein E 129246408 maternal effect protein staufen K17597 STAU; double-stranded RNA-binding protein Staufen E 129240543 fragile X messenger ribonucleoprotein 1 homolog isoform X1 K15516 FMR; fragile X mental retardation protein E 129248526 ras GTPase-activating protein-binding protein 1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 E 129241748 eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A E 129244506 eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B E 129248179 eukaryotic initiation factor 4A-like K03257 EIF4A; translation initiation factor 4A E 129249320 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A E 129236206 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E 129235553 eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B E 129244182 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G E 129249816 eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G E 129238506 ribosomal protein S6 kinase 2 beta isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 129247882 guanine nucleotide-binding protein subunit beta-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein E 129239638 nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor E 129236845 histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] E 129241287 tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3 B mRNA degradation factors C 5'-3' decay D Decapping complex E 129244008 mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] E 129235862 ATP-dependent RNA helicase me31b K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E 129242874 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3 E 129245666 enhancer of mRNA-decapping protein 4 homolog isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4 E 129246829 enhancer of mRNA-decapping protein 4 homolog isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4 E 129247026 protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 D Lsm complex E 129246376 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E 129241584 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E 129251188 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E 129248554 uncharacterized protein LOC129248554 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E 129240404 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 129240488 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 129244748 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E 129248781 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E 129242554 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 D 5' exonucleases E 129237282 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] E 129247378 5'-3' exoribonuclease 2 homolog K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] D Other 5'-3' decay factors E 129235485 m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] E 129240651 probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] C 3'-5' decay D Core exosome factors E 129237346 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4 E 129239085 exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E 129249435 exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40 E 129249305 exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41 E 129253004 exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46 E 129243086 exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3 E 129245556 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42 E 129242319 exosome complex component RRP43-like K12586 RRP43; exosome complex component RRP43 E 129239149 exosome complex component RRP45 isoform X1 K03678 RRP45; exosome complex component RRP45 D Exosome cofactors E 129252975 exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] E 129246399 exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] E 129237775 nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1 E 129249317 M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type D TRAMP complex E 129239608 non-canonical poly(A) RNA polymerase protein Trf4-1 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E 129247788 exosome RNA helicase MTR4-like K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] E 129249487 exosome RNA helicase MTR4-like K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] D Ski complex E 129253194 SKI2 subunit of superkiller complex protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] E 129244807 tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3 E 129235650 SKI8 subunit of superkiller complex protein K12602 WDR61; WD repeat-containing protein 61 D Ccr4-NOT complex E 129235667 CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 129244982 CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E 129247528 regulator of gene activity isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E 129246954 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3 E 129240496 GATA zinc finger domain-containing protein 14 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E 129243011 CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 129237205 CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9 E 129235927 CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10 D Pan complex E 129243873 PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] E 129241991 PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 D Other 3'-5' decay factors E 129242904 ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] E 129237333 protein Tob1 isoform X1 K14443 TOB; protein Tob/BTG E 129245021 ERI1 exoribonuclease 2 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] E 129235485 m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] E 129237977 2',5'-phosphodiesterase 12 isoform X1 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] E 129240651 probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] E 129238621 nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2 E 129240112 protein Smaug isoform X1 K27396 SMG; protein Smaug E 129245054 focadhesin K27498 FOCAD; focadhesin C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E 129243660 ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] E 129249803 probable oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases D Other RNA degradosome components E 129248491 enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E 129239221 polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E 129243614 ATP-dependent 6-phosphofructokinase isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] E 129244921 ATP-dependent 6-phosphofructokinase-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E 129243953 heat shock 70 kDa protein cognate 5 K04043 dnaK; molecular chaperone DnaK E 129237596 heat shock protein 60A K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Others D Bacterial Small RNA Regulators B Archeal mRNA degradation factors C Exosome components D Core exosome E 129239085 exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E 129237346 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4 D Cofactors E 129249305 exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41 E 129245556 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42 D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 27, 2025