+F Repair protein KO
#
DNA Repair and Recombination Proteins - Aspergillus oryzae
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AO090011000482 unnamed protein product; predicted protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AO090102000015 unnamed protein product; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AO090001000732 unnamed protein product; uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AO090003000458 unnamed protein product; G/T mismatch-specific thymine DNA glycosylase K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E AO090005000260 unnamed protein product; 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E AO090701000380 unnamed protein product; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AO090020000091 unnamed protein product; apurinic/apyrimidinic endonuclease and related enzymes K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F AO090102000174 unnamed protein product; DNA polymerase delta, catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F AO090102000153 unnamed protein product; predicted protein K03504 POLD3; DNA polymerase delta subunit 3
F AO090023000217 unnamed protein product; predicted protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F AO090005001292 unnamed protein product; DNA polymerase epsilon, catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F AO090001000736 unnamed protein product; DNA polymerase epsilon, subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
E AO090003000846 unnamed protein product; DNA polymerase delta processivity factor (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen
E AO090020000077 unnamed protein product; 5'-3' exonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E AO090011000796 unnamed protein product; ATP-dependent DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E AO090026000547 unnamed protein product; tyrosyl-DNA phosphodiesterase K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E AO090012000185 unnamed protein product; predicted hydrolase (HIT family) K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E AO090003000060 unnamed protein product; polynucleotide kinase 3' phosphatase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E AO090003000350 unnamed protein product; NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F AO090003000289 unnamed protein product; nucleotide excision repair complex XPC-HR23B, subunit XPC/DPB11 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F AO090026000480 unnamed protein product; nucleotide excision repair complex XPC-HR23B, subunit XPC/DPB11 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F AO090009000655 unnamed protein product; nucleotide excision repair factor NEF2, RAD23 component K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F AO090009000684 unnamed protein product; SCF ubiquitin ligase, Rbx1 component K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F AO090120000394 unnamed protein product; cullins K10609 CUL4; cullin 4
F AO090023000521 unnamed protein product; damage-specific DNA binding complex, subunit DDB1 K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F AO090026000832 unnamed protein product; leucine rich repeat proteins, some proteins contain F-box K15082 RAD7; DNA repair protein RAD7
F AO090026000833 unnamed protein product; nucleotide excision repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F AO090003000491 unnamed protein product; RNA polymerase II, large subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F AO090038000568 unnamed protein product; RNA polymerase II, second largest subunit K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F AO090026000333 unnamed protein product; RNA polymerase II, subunit POLR2C/RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F AO090005001477 unnamed protein product; RNA polymerase II, fourth largest subunit K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F AO090005000619 unnamed protein product; DNA-directed RNA polymerase subunit E' K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F AO090011000849 unnamed protein product; predicted protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F AO090026000830 unnamed protein product; RNA polymerase, subunit L K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
E Cul4-CSA complex
F AO090009000684 unnamed protein product; SCF ubiquitin ligase, Rbx1 component K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F AO090120000394 unnamed protein product; cullins K10609 CUL4; cullin 4
F AO090023000521 unnamed protein product; damage-specific DNA binding complex, subunit DDB1 K10610 DDB1; DNA damage-binding protein 1
F AO090003001280 unnamed protein product; transcription-coupled repair protein CSA, contains WD40 domain K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F AO090011000342 unnamed protein product; transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) K10841 ERCC6; DNA excision repair protein ERCC-6
D TFIIH complex
E AO090102000536 unnamed protein product; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E AO090012000485 unnamed protein product; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E AO090003001052 unnamed protein product; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E AO090102000640 unnamed protein product; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E AO090026000670 unnamed protein product; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E AO090206000056 unnamed protein product; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E AO090701000553 unnamed protein product; predicted protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E AO090701000281 unnamed protein product; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit K06634 CCNH; cyclin H
E AO090023000639 unnamed protein product; predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E AO090001000751 unnamed protein product; single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins K07466 RFA1; replication factor A1
E AO090023000503 unnamed protein product; single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit K10739 RFA2; replication factor A2
D Other NER factors
E AO090003001345 unnamed protein product; DNA excision repair protein XPA/XPAC/RAD14 K10847 XPA; DNA-repair protein complementing XP-A cells
E AO090023000964 unnamed protein product; structure-specific endonuclease ERCC1-XPF, ERCC1 component K10849 ERCC1; DNA excision repair protein ERCC-1
E AO090120000138 unnamed protein product; structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E AO090005001549 unnamed protein product; 5'-3' exonuclease K10846 ERCC5; DNA excision repair protein ERCC-5
E AO090011000796 unnamed protein product; ATP-dependent DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E AO090005000611 unnamed protein product; DNA repair/transcription protein Mms19 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E AO090003000103 unnamed protein product; cullins K03869 CUL3; cullin 3
E AO090023000220 unnamed protein product; predicted protein K03872 ELOC; elongin-C
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AO090005001261 unnamed protein product; mismatch repair ATPase MSH2 (MutS family) K08735 MSH2; DNA mismatch repair protein MSH2
E AO090005000134 unnamed protein product; mismatch repair MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E AO090023000729 unnamed protein product; mismatch repair ATPase MSH6 (MutS family) K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E AO090120000288 unnamed protein product; DNA mismatch repair protein - MLH1 family K08734 MLH1; DNA mismatch repair protein MLH1
E AO090026000318 unnamed protein product; DNA mismatch repair protein - MLH2/PMS1/Pms2 family K10858 PMS2; DNA mismatch repair protein PMS2
E AO090023000933 unnamed protein product; DNA mismatch repair protein - MLH3 family K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E AO090102000174 unnamed protein product; DNA polymerase delta, catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E AO090102000153 unnamed protein product; predicted protein K03504 POLD3; DNA polymerase delta subunit 3
E AO090023000217 unnamed protein product; predicted protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E AO090001000751 unnamed protein product; single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins K07466 RFA1; replication factor A1
E AO090023000503 unnamed protein product; single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit K10739 RFA2; replication factor A2
D RFC (replication factor C)
E AO090026000424 unnamed protein product; replication factor C, subunit RFC1 (large subunit) K10754 RFC1; replication factor C subunit 1
E AO090005001441 unnamed protein product; replication factor C, subunit RFC4 K10755 RFC2_4; replication factor C subunit 2/4
E AO090701000034 unnamed protein product; replication factor C, subunit RFC2 K10755 RFC2_4; replication factor C subunit 2/4
E AO090003001337 unnamed protein product; replication factor C, subunit RFC5 K10756 RFC3_5; replication factor C subunit 3/5
E AO090026000422 unnamed protein product; replication factor C, subunit RFC3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E AO090003000846 unnamed protein product; DNA polymerase delta processivity factor (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen
E AO090005001363 unnamed protein product; 5'-3' exonuclease K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E AO090011000796 unnamed protein product; ATP-dependent DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E AO090009000186 unnamed protein product; WD40 protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E AO090023000471 unnamed protein product; DNA repair exonuclease MRE11 K10865 MRE11; double-strand break repair protein MRE11
E AO090009000296 unnamed protein product; DNA repair protein RAD50, ABC-type ATPase/SMC superfamily K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E AO090023000471 unnamed protein product; DNA repair exonuclease MRE11 K10865 MRE11; double-strand break repair protein MRE11
E AO090009000296 unnamed protein product; DNA repair protein RAD50, ABC-type ATPase/SMC superfamily K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E AO090038000386 unnamed protein product; DNA repair protein RAD51/RHP55 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E AO090038000386 unnamed protein product; DNA repair protein RAD51/RHP55 K04482 RAD51; DNA repair protein RAD51
E AO090001000225 unnamed protein product; DNA repair protein RHP57 K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E AO090023000890 unnamed protein product; DNA repair and recombination protein RAD52/RAD22 K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E AO090003000413 unnamed protein product; DNA repair protein, SNF2 family K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E AO090005001213 unnamed protein product; DNA repair protein, SNF2 family K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E AO090003000299 unnamed protein product; ATP-dependent DNA helicase K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E AO090003000299 unnamed protein product; ATP-dependent DNA helicase K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AO090026000611 unnamed protein product; DNA topoisomerase III alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E AO090005001387 unnamed protein product; predicted protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E AO090001000751 unnamed protein product; single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins K07466 RFA1; replication factor A1
E AO090023000503 unnamed protein product; single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit K10739 RFA2; replication factor A2
D Protein phosphatase 4
E AO090701000691 unnamed protein product; protein predicted to be involved in carbohydrate metabolism K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E AO090120000157 unnamed protein product; structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily K22803 SMC5; structural maintenance of chromosomes protein 5
E AO090020000014 unnamed protein product; DNA repair protein RAD18 (SMC family protein) K22804 SMC6; structural maintenance of chromosomes protein 6
E AO090120000033 unnamed protein product; predicted protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E AO090020000425 unnamed protein product; uncharacterized conserved protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E AO090120000462 unnamed protein product; predicted protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E AO090012000847 unnamed protein product; endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E AO090009000650 unnamed protein product; predicted protein K10991 SWI5; DNA repair protein Swi5/Sae3
E AO090102000554 unnamed protein product; GIY-YIG type nuclease K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E AO090012000807 unnamed protein product; predicted protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E AO090003001148 unnamed protein product; dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins K11339 MORF4L1; mortality factor 4-like protein 1
E AO090003000368 unnamed protein product; AAA+-type ATPase K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E AO090005000823 unnamed protein product; Fe2+/Zn2+ regulated transporter K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E AO090005000804 unnamed protein product; DEAD-box like helicase K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
E AO090023000471 unnamed protein product; DNA repair exonuclease MRE11 K10865 MRE11; double-strand break repair protein MRE11
E AO090009000296 unnamed protein product; DNA repair protein RAD50, ABC-type ATPase/SMC superfamily K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E AO090120000322 unnamed protein product; ATP-dependent DNA ligase IV K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E AO090102000355 unnamed protein product; predicted protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E AO090011000816 unnamed protein product; DNA polymerase IV (family X) K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E AO090038000378 unnamed protein product; DNA polymerase IV (family X) K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E AO090012000185 unnamed protein product; predicted hydrolase (HIT family) K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E AO090003000880 unnamed protein product; predicted protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
E AO090001000291 unnamed protein product; predicted protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E AO090005001139 unnamed protein product; predicted protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E AO090026000243 unnamed protein product; predicted protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
E AO090003000299 unnamed protein product; ATP-dependent DNA helicase K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AO090026000611 unnamed protein product; DNA topoisomerase III alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E AO090005001387 unnamed protein product; predicted protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E AO090005000266 unnamed protein product; uncharacterized conserved protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E AO090038000386 unnamed protein product; DNA repair protein RAD51/RHP55 K04482 RAD51; DNA repair protein RAD51
E AO090026000226 unnamed protein product; predicted protein K11137 TELO2; telomere length regulation protein
E AO090120000302 unnamed protein product; conserved WD40 repeat-containing protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E AO090023000198 unnamed protein product; guanine nucleotide-binding protein K23314 WRAP53; telomerase Cajal body protein 1
E AO090701000278 unnamed protein product; uncharacterized conserved protein, contains WD40 repeat K24752 WDR70; WD repeat-containing protein 70
E AO090009000186 unnamed protein product; WD40 protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D AO090020000472 unnamed protein product; DNA polymerase iota/DNA damage inducible protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D AO090010000199 unnamed protein product; predicted DNA damage inducible protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D AO090001000518 unnamed protein product; translesion DNA polymerase - REV1 deoxycytidyl transferase K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D AO090020000319 unnamed protein product; DNA polymerase zeta, catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D AO090103000407 unnamed protein product; ubiquitin-protein ligase K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D AO090102000154 unnamed protein product; postreplication repair protein RAD18 K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D AO090120000386 unnamed protein product; helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D AO090701000191 unnamed protein product; helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D AO090003000999 unnamed protein product; ubiquitin-conjugating enzyme E2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D AO090120000129 unnamed protein product; ubiquitin-protein ligase K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D AO090003000846 unnamed protein product; DNA polymerase delta processivity factor (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen
D AO090009000171 unnamed protein product; SPRT-like metalloprotease K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D AO090009000325 unnamed protein product; predicted protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D AO090010000774 unnamed protein product; checkpoint RAD17-RFC complex, RAD17/RAD24 component K06662 HRAD17; cell cycle checkpoint protein
D AO090005001441 unnamed protein product; replication factor C, subunit RFC4 K10755 RFC2_4; replication factor C subunit 2/4
D AO090701000034 unnamed protein product; replication factor C, subunit RFC2 K10755 RFC2_4; replication factor C subunit 2/4
D AO090003001337 unnamed protein product; replication factor C, subunit RFC5 K10756 RFC3_5; replication factor C subunit 3/5
D AO090026000422 unnamed protein product; replication factor C, subunit RFC3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D AO090009000325 unnamed protein product; predicted protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D AO090206000054 unnamed protein product; DNA topoisomerase I-interacting protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D AO090011000458 unnamed protein product; predicted protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D AO090026000226 unnamed protein product; predicted protein K11137 TELO2; telomere length regulation protein
D AO090011000797 unnamed protein product; uncharacterized conserved protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D AO090003001347 unnamed protein product; predicted protein K23388 UBL4; ubiquitin-like protein 4
D AO090701000032 unnamed protein product; uncharacterized conserved protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D AO090206000006 unnamed protein product; protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D AO090120000393 unnamed protein product; protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D AO090003000441 unnamed protein product; checkpoint kinase and related serine/threonine protein kinases K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D AO090026000841 unnamed protein product; serine/threonine protein kinase Chk2 and related proteins K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D AO090003000105 unnamed protein product; M-phase inducer phosphatase K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D AO090120000257 unnamed protein product; multifunctional chaperone (14-3-3 family) K06630 YWHAE; 14-3-3 protein epsilon
D AO090003000053 unnamed protein product; multifunctional chaperone (14-3-3 family) K06630 YWHAE; 14-3-3 protein epsilon
D AO090010000385 unnamed protein product; predicted protein K02831 RAD53; ser/thr/tyr protein kinase RAD53 [EC:2.7.11.-]
D AO090011000925 unnamed protein product; cyclin-dependent kinase WEE1 K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D AO090003000756 unnamed protein product; transcription factor of the Forkhead/HNF3 family K24664 FKH; forkhead protein FKH
D AO090005001298 unnamed protein product; AAA+-type ATPase K12196 VPS4; vacuolar protein-sorting-associated protein 4
D AO090003000382 unnamed protein product; predicted protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D AO090003000106 unnamed protein product; predicted regulator of rRNA gene transcription (MYB-binding protein) K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D AO090012000306 unnamed protein product; predicted hydrolase involved in interstrand cross-link repair K15340 DCLRE1A; DNA cross-link repair 1A protein
D AO090012000492 unnamed protein product; predicted protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D AO090001000075 unnamed protein product; predicted protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D AO090120000211 unnamed protein product; transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D AO090120000500 unnamed protein product; mRNA splicing factor K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D AO090001000665 unnamed protein product; mRNA splicing protein CDC5 (Myb superfamily) K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D AO090001000448 unnamed protein product; predicted protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D AO090038000349 unnamed protein product; pleiotropic regulator 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D AO090003001019 unnamed protein product; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AO090038000343 unnamed protein product; predicted protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AO090005000780 unnamed protein product; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AO090023000916 unnamed protein product; ribonucleotide reductase, alpha subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D AO090120000352 unnamed protein product; ribonucleotide reductase, beta subunit K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AO090011000482 unnamed protein product; predicted protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AO090102000015 unnamed protein product; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AO090001000732 unnamed protein product; uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AO090023000907 unnamed protein product; 3-methyladenine DNA glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E AO090003001022 unnamed protein product; predicted protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AO090701000380 unnamed protein product; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AO090005001517 unnamed protein product; 3'-5' DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E AO090005001517 unnamed protein product; 3'-5' DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D AO090003001019 unnamed protein product; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AO090038000343 unnamed protein product; predicted protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AO090005000780 unnamed protein product; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024