+E Transcription factors KO
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Transcription Factors - Isoalcanivorax pacificus
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D S7S_07415 AraC-type DNA-binding domain-containing protein K21747 alkR; AraC family transcriptional regulator, alkane utilization regulator
D S7S_17005 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D S7S_16070 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D S7S_03885 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D S7S_18100 glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D S7S_15660 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D S7S_03460 DNA-binding transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D S7S_06530 transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D S7S_00260 hydrogen peroxide-inducible gene activator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D S7S_09625 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D S7S_00580 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D S7S_04035 LysR family transcription regulator protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
C DeoR family
C LacI family
C GntR family
C TetR/AcrR family
D S7S_07270 transcriptional regulator TtgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D S7S_12215 transcriptional regulator TtgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D S7S_00390 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator
D S7S_00760 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D S7S_17225 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator
D S7S_06890 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D S7S_09685 transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D S7S_03070 DNA-binding transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D S7S_15805 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D S7S_10275 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D S7S_11215 transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
D S7S_01925 asnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D S7S_02985 LuxR family transcriptional regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D S7S_06565 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D S7S_11115 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D S7S_13265 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D S7S_01880 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D S7S_14035 redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D S7S_06365 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D S7S_16615 fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D S7S_04140 FUR family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D S7S_13345 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
C CRP/FNR family
D S7S_04510 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D S7S_14020 DNA-binding transcriptional dual regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D S7S_10185 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D S7S_09230 transcriptional regulator Anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D S7S_03645 iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D S7S_01050 hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D S7S_17780 arsenic resistance operon regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D S7S_02755 biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D S7S_13955 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D S7S_10505 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D S7S_02470 transcriptional regulator, y4mF family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D S7S_16685 XRE family transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D S7S_08720 bolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D S7S_18345 ParB-like nuclease domain family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D S7S_10640 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D S7S_16605 heat-inducible transcription repressor hrcA K03705 hrcA; heat-inducible transcriptional repressor
D S7S_06420 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D S7S_07140 PaaX domain-containing protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D S7S_01265 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D S7S_01860 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D S7S_17970 transcriptional regulator PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D S7S_11455 phage transcriptional regulator AlpA K07733 alpA; prophage regulatory protein
D S7S_05515 phage transcriptional regulator AlpA K07733 alpA; prophage regulatory protein
D S7S_14260 phage transcriptional regulator AlpA K07733 alpA; prophage regulatory protein
D S7S_17960 hypothetical protein K07735 algH; putative transcriptional regulator
D S7S_15905 DnaK transcriptional regulator DksA K06204 dksA; RNA polymerase-binding transcription factor
D S7S_15590 transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D S7S_04770 protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0