+E Transcription factors KO #

  Transcription Factors - Isoalcanivorax pacificus

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D S7S_07415 AraC-type DNA-binding domain-containing protein K21747 alkR; AraC family transcriptional regulator, alkane utilization regulator D S7S_17005 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D S7S_16070 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D S7S_03885 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D S7S_18100 glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D S7S_15660 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D S7S_03460 DNA-binding transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D S7S_06530 transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D S7S_00260 hydrogen peroxide-inducible gene activator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D S7S_09625 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D S7S_00580 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D S7S_04035 LysR family transcription regulator protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC C DeoR family C LacI family C GntR family C TetR/AcrR family D S7S_07270 transcriptional regulator TtgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D S7S_12215 transcriptional regulator TtgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D S7S_00390 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator D S7S_00760 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D S7S_17225 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator D S7S_06890 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D S7S_09685 transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D S7S_03070 DNA-binding transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D S7S_15805 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D S7S_10275 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D S7S_11215 transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator C Lrp/AsnC family D S7S_01925 asnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D S7S_02985 LuxR family transcriptional regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D S7S_06565 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D S7S_11115 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D S7S_13265 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D S7S_01880 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D S7S_14035 redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D S7S_06365 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D S7S_16615 fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D S7S_04140 FUR family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D S7S_13345 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor C CRP/FNR family D S7S_04510 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D S7S_14020 DNA-binding transcriptional dual regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D S7S_10185 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D S7S_09230 transcriptional regulator Anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D S7S_03645 iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D S7S_01050 hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D S7S_17780 arsenic resistance operon regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D S7S_02755 biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D S7S_13955 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D S7S_10505 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D S7S_02470 transcriptional regulator, y4mF family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D S7S_16685 XRE family transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D S7S_08720 bolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D S7S_18345 ParB-like nuclease domain family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D S7S_10640 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH D S7S_16605 heat-inducible transcription repressor hrcA K03705 hrcA; heat-inducible transcriptional repressor D S7S_06420 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D S7S_07140 PaaX domain-containing protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D S7S_01265 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D S7S_01860 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D S7S_17970 transcriptional regulator PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D S7S_11455 phage transcriptional regulator AlpA K07733 alpA; prophage regulatory protein D S7S_05515 phage transcriptional regulator AlpA K07733 alpA; prophage regulatory protein D S7S_14260 phage transcriptional regulator AlpA K07733 alpA; prophage regulatory protein D S7S_17960 hypothetical protein K07735 algH; putative transcriptional regulator D S7S_15905 DnaK transcriptional regulator DksA K06204 dksA; RNA polymerase-binding transcription factor D S7S_15590 transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D S7S_04770 protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0