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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Andrographis paniculata</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        127252350 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        127247374 DNA-directed RNA polymerase II subunit RPB2-like	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        127253158 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        127260835 DNA-directed RNA polymerases II, IV and V subunit 3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        127241797 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        127244392 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        127247210 DNA-directed RNA polymerases IV and V subunit 4-like	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        127246151 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        127243851 DNA-directed RNA polymerases II, IV and V subunit 9A	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        127256684 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127257198 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127264831 DNA-directed RNA polymerase V subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127266315 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        127260524 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        127265807 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        127252220 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        127246427 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        127255727 DNA-directed RNA polymerase IV subunit 1 isoform X1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        127262142 DNA-directed RNA polymerase V subunit 1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        127250286 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        127249122 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        127249254 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        127250959 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        127239317 transcription initiation factor IIA large subunit-like isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        127253849 transcription initiation factor IIA large subunit-like isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        127261392 transcription initiation factor IIA subunit 2-like	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
E        127252344 transcription initiation factor IIA subunit 2-like	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        127244071 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        127244072 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        127248492 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        127263619 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        127251641 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127253835 TATA-box-binding protein 2-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127262425 transcription initiation factor TFIID subunit 1 isoform X1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        127264750 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        127265345 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        127240567 transcription initiation factor TFIID subunit 5 isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        127256381 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        127248124 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        127253695 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        127242113 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        127243726 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        127266047 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        127255654 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        127241141 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        127251054 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        127253283 transcription initiation factor TFIID subunit 12b isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        127266265 transcription initiation factor TFIID subunit 13-like	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        127264078 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        127247332 transcription initiation factor IIE subunit alpha-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        127254338 transcription factor efuD-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        127255936 uncharacterized protein LOC127255936	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        127265263 uncharacterized protein LOC127265263	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        127247452 transcription initiation factor IIF subunit alpha isoform X1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        127244963 uncharacterized protein LOC127244963	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        127246442 transcription initiation factor IIF subunit beta	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        127239441 general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        127253145 general transcription and DNA repair factor IIH subunit TFB1-1-like	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        127245127 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        127253024 general transcription and DNA repair factor IIH subunit TFB4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        127241966 general transcription and DNA repair factor IIH subunit TFB2	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        127265631 general transcription and DNA repair factor IIH helicase subunit XPB1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        127244938 general transcription and DNA repair factor IIH helicase subunit XPD isoform X1	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        127240124 general transcription and DNA repair factor IIH subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        127243317 cyclin-dependent kinase D-3-like isoform X1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        127246457 uncharacterized protein LOC127246457 isoform X1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        127253770 cyclin-H1-1 isoform X1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        127253970 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        127253282 mediator of RNA polymerase II transcription subunit 11 isoform X1	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        127243395 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        127258132 mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        127253644 mediator of RNA polymerase II transcription subunit 20a	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        127253928 mediator of RNA polymerase II transcription subunit 22a-like	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        127253699 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        127239530 mediator of RNA polymerase II transcription subunit 7a-like	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        127240105 mediator of RNA polymerase II transcription subunit 10b-like	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        127252691 mediator of RNA polymerase II transcription subunit 10b-like isoform X1	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        127247296 mediator of RNA polymerase II transcription subunit 21 isoform X1	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        127245102 mediator of RNA polymerase II transcription subunit 31-like	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
E        127263133 mediator of RNA polymerase II transcription subunit 31-like	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        127246353 mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        127248623 cyclin-dependent kinase E-1 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        127252021 cyclin-C1-2-like	K15161 CCNC; cyclin-C 
E        127262070 mediator of RNA polymerase II transcription subunit 13 isoform X1	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        127261718 mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        127260806 mediator of RNA polymerase II transcription subunit 25-like isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        127261802 mediator of RNA polymerase II transcription subunit 25-like isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        127260941 mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        127261989 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        127242815 mediator of RNA polymerase II transcription subunit 33A-like isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        127248990 mediator of RNA polymerase II transcription subunit 33A-like isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        127244196 histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        127248718 transcription-associated protein 1-like isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        127253272 transcriptional adapter ADA2b-like isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        127254589 transcriptional adapter ADA2-like isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        127264750 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        127265345 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        127240567 transcription initiation factor TFIID subunit 5 isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        127256381 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        127248124 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        127253695 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        127266047 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        127255654 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        127251054 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        127253283 transcription initiation factor TFIID subunit 12b isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        127249339 SAGA-associated factor 11	K11363 SGF11; SAGA-associated factor 11 
E        127257807 SAGA-associated factor 29 homolog A-like isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        127240625 SAGA-associated factor 29 homolog A-like	K11364 SGF29; SAGA-associated factor 29 
E        127243781 SAGA-associated factor 29 homolog A-like	K11364 SGF29; SAGA-associated factor 29 
E        127244065 protein CHROMATIN REMODELING 5 isoform X1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        127242128 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        127266406 ubiquitin C-terminal hydrolase 22-like isoform X1	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        127243609 ubiquitin C-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        127256570 pre-mRNA-splicing factor prp12-like isoform X1	K12830 SF3B3; splicing factor 3B subunit 3 
E        127256582 pre-mRNA-splicing factor prp12-like isoform X1	K12830 SF3B3; splicing factor 3B subunit 3 
E        127242553 spliceosome-associated protein 130 A	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        127262624 ATP-dependent helicase BRM	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        127255659 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        127256348 SWI/SNF complex subunit SWI3C-like isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        127250576 SWI/SNF complex subunit SWI3C-like	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        127263004 SWI/SNF complex subunit SWI3A	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        127242533 SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        127253684 SWI/SNF complex subunit SWI3D	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        127258175 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        127241986 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        127243386 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        127254011 actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        127255659 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        127255893 RNA polymerase II transcriptional coactivator KELP-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        127255894 RNA polymerase II transcriptional coactivator KELP-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        127248668 RNA polymerase II transcriptional coactivator KIWI-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        127260644 protein SHORT ROOT IN SALT MEDIUM 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        127256310 transcription elongation factor TFIIS isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        127246391 transcription elongation factor SPT4 homolog 2-like isoform X1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        127257143 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        127265374 transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        127250948 polyadenylation and cleavage factor homolog 4-like isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        127263507 uncharacterized protein LOC127263507	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        127265138 polyadenylation and cleavage factor homolog 4 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        127244713 cleavage and polyadenylation specificity factor subunit 1 isoform X1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        127261876 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        127253167 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        127266529 serine/threonine-protein phosphatase PP1 isozyme 3-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        127244823 serine/threonine-protein phosphatase PP1 isozyme 3	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        127246466 serine/threonine-protein phosphatase PP1-like isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        127259653 serine/threonine-protein phosphatase PP1 isozyme 2 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        127261336 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        127262542 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        127262597 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        127250912 uncharacterized protein LOC127250912	K06100 SYMPK; symplekin 
E        127265101 uncharacterized protein LOC127265101	K06100 SYMPK; symplekin 
E        127243359 uncharacterized protein LOC127243359	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        127256966 5'-3' exoribonuclease 3	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        127243499 NAD-capped RNA hydrolase DXO1	K14845 RAI1; RAT1-interacting protein 
E        127256686 uncharacterized protein LOC127256686 isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        127242417 uncharacterized protein LOC127242417	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        127263819 uncharacterized protein LOC127263819	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        127243428 uncharacterized protein LOC127243428 isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        127257876 peptidyl-prolyl cis-trans isomerase Pin1-like	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
E        127261125 peptidyl-prolyl cis-trans isomerase Pin1-like	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
E        127262251 peptidyl-prolyl cis-trans isomerase Pin1-like	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        127266517 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        127248994 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        127250810 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        127263325 protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        127240927 protein LEO1 homolog isoform X1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        127247611 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        127240039 uncharacterized protein LOC127240039	K15186 EAF; ELL-associated factor 
E        127266541 cyclin-T1-4-like	K15188 CCNT; cyclin T 
E        127245270 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        127256917 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        127249332 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        127260491 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        127261707 cyclin-T1-3-like	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        127266541 cyclin-T1-4-like	K15188 CCNT; cyclin T 
E        127245270 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        127256917 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        127249332 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        127260491 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        127261707 cyclin-T1-3-like	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        127251493 probable RNA methyltransferase At5g51130	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        127249635 la-related protein 6A	K15191 LARP7; La-related protein 7 
E        127261202 la-related protein 6C-like isoform X1	K15191 LARP7; La-related protein 7 
E        127262332 la-related protein 6C isoform X1	K15191 LARP7; La-related protein 7 
E        127242746 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        127266541 cyclin-T1-4-like	K15188 CCNT; cyclin T 
E        127245270 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        127256917 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        127249332 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        127260491 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        127261707 cyclin-T1-3-like	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        127265636 TATA-binding protein-associated factor BTAF1 isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        127250871 protein Dr1 homolog	K21751 DR1; down-regulator of transcription 1 
E        127264395 protein Dr1 homolog isoform X1	K21751 DR1; down-regulator of transcription 1 
E        127244290 uncharacterized protein LOC127244290 isoform X1	K21752 DRAP1; Dr1-associated corepressor 
E        127246414 uncharacterized protein LOC127246414	K21752 DRAP1; Dr1-associated corepressor 
E        127246516 uncharacterized protein LOC127246516	K21752 DRAP1; Dr1-associated corepressor 
E        127242286 uncharacterized protein LOC127242286	K15193 SPTY2D1; protein SPT2 
E        127265052 protein spt2-like isoform X1	K15193 SPTY2D1; protein SPT2 
E        127247479 RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        127251613 RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        127254851 RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        127263690 RNA polymerase II C-terminal domain phosphatase-like 3 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        127263776 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        127245807 uncharacterized protein LOC127245807 isoform X1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        127259626 uncharacterized protein LOC127259626	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        127253298 uncharacterized protein LOC127253298	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        127261782 protein IWS1 homolog 1-like	K17498 SPN1; transcription factor SPN1 
E        127265721 protein IWS1 homolog 1	K17498 SPN1; transcription factor SPN1 
E        127251797 transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        127245403 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        127262267 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        127254694 uncharacterized protein LOC127254694 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        127257404 GPN-loop GTPase QQT1	K24104 GPN; GPN-loop GTPase 
E        127264981 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        127254409 GPN-loop GTPase QQT2	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        127248401 DNA-directed RNA polymerase III subunit 1 isoform X1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        127244923 DNA-directed RNA polymerase III subunit 2 isoform X1	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        127261083 uncharacterized protein LOC127261083	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        127265943 uncharacterized protein LOC127265943	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        127256521 uncharacterized protein LOC127256521	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        127259285 uncharacterized protein LOC127259285 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        127251687 uncharacterized protein LOC127251687	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        127248602 uncharacterized protein LOC127248602	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        127239374 uncharacterized protein LOC127239374	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        127251309 uncharacterized protein LOC127251309	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        127251911 uncharacterized protein LOC127251911	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        127263093 uncharacterized protein LOC127263093	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        127256546 uncharacterized protein LOC127256546	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        127263182 uncharacterized protein LOC127263182	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        127256340 uncharacterized protein LOC127256340	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        127256684 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127257198 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127264831 DNA-directed RNA polymerase V subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127266315 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        127260524 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        127265807 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        127252220 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        127246427 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        127258648 transcription factor IIIA-like	K09191 GTF3A; general transcription factor IIIA 
E        127264118 transcription factor IIIA-like	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        127251641 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127253835 TATA-box-binding protein 2-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127241536 plant-specific TFIIB-related protein PTF2	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        127263715 transcription factor IIIB 60 kDa subunit isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
D      TFIIIC
E        127254623 uncharacterized protein LOC127254623 isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        127241453 uncharacterized protein LOC127241453 isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        127263720 uncharacterized protein LOC127263720	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        127264081 uncharacterized protein LOC127264081	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        127257710 uncharacterized protein LOC127257710	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
E        127243824 uncharacterized protein LOC127243824	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        127264081 uncharacterized protein LOC127264081	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        127263720 uncharacterized protein LOC127263720	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        127243823 uncharacterized protein LOC127243823	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        127253429 snRNA-activating protein complex subunit	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        127261710 uncharacterized protein LOC127261710	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        127241287 DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        127244992 DNA-directed RNA polymerase I subunit 2 isoform X1	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        127261083 uncharacterized protein LOC127261083	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        127265943 uncharacterized protein LOC127265943	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        127253994 uncharacterized protein LOC127253994	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        127264314 uncharacterized protein LOC127264314	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        127256684 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127257198 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127264831 DNA-directed RNA polymerase V subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        127266315 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        127260524 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        127265807 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        127252220 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        127246427 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        127251641 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        127253835 TATA-box-binding protein 2-like isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        127255809 high mobility group B protein 13-like	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        127244884 uncharacterized protein LOC127244884	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        127257774 upstream activation factor subunit spp27-like	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        127246391 transcription elongation factor SPT4 homolog 2-like isoform X1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        127257143 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        127266605 ISWI chromatin-remodeling complex ATPase CHR11-like	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        127247881 ISWI chromatin-remodeling complex ATPase CHR11 isoform X1	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        127250690 ISWI chromatin-remodeling complex ATPase CHR11-like	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        17097745 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        127261548 DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        127261551 DNA-directed RNA polymerase subunit alpha-like	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        17097689 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        127261535 DNA-directed RNA polymerase subunit beta	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        17097687 rpoC2; RNA polymerase beta'' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        17097688 rpoC1; RNA polymerase beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        127261534 DNA-directed RNA polymerase subunit beta''-like	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        127261557 DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        127256210 RNA polymerase sigma factor sigA isoform X1	K03086 rpoD; RNA polymerase primary sigma factor 
E        127255573 RNA polymerase sigma factor sigC-like	K03093 sigI; RNA polymerase sigma-I factor 
E        127244846 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like	K03093 sigI; RNA polymerase sigma-I factor 
E        127245885 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        127244071 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        127244072 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        127248492 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        127263619 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        127247332 transcription initiation factor IIE subunit alpha-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        127254338 transcription factor efuD-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 9, 2024