+D Transcription factors KO
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Transcription Factors - Aromatoleum petrolei
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Stork head/winged helix factors
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG TOX
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D ToN1_01830 Putative transcriptional regulator, AraC family K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D ToN1_04050 Putative transcriptional regulator, AraC family K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D ToN1_38350 Transcriptional regulator, AraC family K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D ToN1_46050 Bifunctional transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D ToN1_41160 Transcriptional regulator, AraC family K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D ToN1_44460 Transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D ToN1_44600 Transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D ToN1_44680 Transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D ToN1_44830 Transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D ToN1_50110 Transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D ToN1_50240 Transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D ToN1_02030 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D ToN1_11300 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D ToN1_20800 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D ToN1_31050 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D ToN1_31140 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D ToN1_43010 Transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D ToN1_24910 Transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D ToN1_13540 Transcriptional regulator, LysR family K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D ToN1_21920 Transcriptional regulator, LysR-type K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D ToN1_36440 Transcriptional regulator, LysR-type K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D ToN1_04170 Transcriptional regulator, LysR family K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC
D ToN1_25580 Transcriptional regulator, LysR family K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D ToN1_42440 Transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D ToN1_04600 Transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D ToN1_38510 Transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D ToN1_29080 Transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D ToN1_02790 cbbR; Transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D ToN1_21810 Transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
C DeoR family
C LacI family
D ToN1_44060 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D ToN1_36030 Transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D ToN1_47570 Transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D ToN1_13410 Transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D ToN1_44900 betI; HTH-type transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D ToN1_45970 Transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D ToN1_13450 acuR; Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
C Lrp/AsnC family
D ToN1_13100 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D ToN1_28660 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D ToN1_33630 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D ToN1_46890 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D ToN1_03280 Putative transcriptional regulator, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D ToN1_03790 Putative transcriptional regulator, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D ToN1_50260 Transcriptional regulator, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D ToN1_07130 Transcriptional regulator, MarR family K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D ToN1_47290 Transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D ToN1_37030 Transcriptional regulatory protein, MerR family K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D ToN1_16300 Transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D ToN1_18350 Ferric-uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D ToN1_37880 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
C CRP/FNR family
D ToN1_02290 Transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D ToN1_37140 Putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D ToN1_34630 Transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D ToN1_37000 acpR; Anaerobic aromatic central pathway regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D ToN1_07520 Winged helix-like DNA-binding domain superfamily protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
D ToN1_27740 Transcriptional regulatory protein, Crp family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D ToN1_36960 Transcriptional regulator, Crp/Fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D ToN1_44170 Transcriptional regulator, crp-fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D ToN1_45290 Transcriptional regulator, crp-fnr family K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
D ToN1_09740 iscR; HTH-type transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D ToN1_42090 Transcriptional regulator, Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D ToN1_42170 Transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D ToN1_26680 boxR; Shikimate kinase K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator
D ToN1_49110 aroK2; Shikimate kinase K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator
D ToN1_13490 Transcriptional regulator, Xre family K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D ToN1_00440 Transcriptional regulator protein, PadR family K10947 K10947; PadR family transcriptional regulator
C Other families
D ToN1_43520 Transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D ToN1_31570 Biotin-acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D ToN1_34510 Putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D ToN1_48150 Type II toxin-antitoxin system antitoxin, MqsA family K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D ToN1_19150 Transcriptional regulator, sigma-54 dependent K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D ToN1_41570 Sigma54-dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D ToN1_41600 Sigma54-dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D ToN1_41780 Sigma54-dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D ToN1_43660 Sigma54-dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D ToN1_23840 modE; Molybdenum transport system, transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D ToN1_23850 Molybdenum-pterin binding domain-containing protein K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D ToN1_33640 putA; Bifunctional protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D ToN1_00930 nosR1; Nitrous oxide reductase transcription regulator, 4Fe-4S ferredoxin-type domain-containing K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D ToN1_45840 Putative transcriptional regualtor, BolA family K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D ToN1_24520 putative chromosome partitioning protein, ParB-like K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ToN1_37850 hrcA; Heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D ToN1_49700 Transcriptional regulator, TyrR family K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D ToN1_39500 paaX; Phenylacetic acid degradation operon negative regulatory protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D ToN1_20950 Transcription elongation factor, GreA/GreB family K06140 rnk; regulator of nucleoside diphosphate kinase
D ToN1_32830 Transcription elongation factor, GreA/GreB family K06140 rnk; regulator of nucleoside diphosphate kinase
D ToN1_41200 Transcription elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D ToN1_08810 putative phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D ToN1_18030 Phosphoribosyl transferase domain-containing protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D ToN1_34300 DNA-binding domain-containing protein K07733 alpA; prophage regulatory protein
D ToN1_21160 Transcriptional regulator K07734 paiB; transcriptional regulator
D ToN1_18010 putative protein UPF0301 K07735 algH; putative transcriptional regulator
D ToN1_08160 dksA1; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D ToN1_24190 dksA2; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D ToN1_35410 nrdR; Transcriptional repressor K07738 nrdR; transcriptional repressor NrdR
D ToN1_17160 mraZ; Transcriptional regulator K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025
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Classification taken and modified from TRANSFAC 7.0