+F Repair protein KO #

  DNA Repair and Recombination Proteins - Acetobacter pasteurianus IFO 3283-12

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D APA12_26690 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D APA12_04380 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E APA12_25430 mutY; DNA glycosylase A/G-specific MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E APA12_25410 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D APA12_18370 acetyltransferase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APA12_02370 hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APA12_21030 phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APA12_12370 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D APA12_26690 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D APA12_04380 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D APA12_21860 DNA repair protein for alkylated DNA K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E APA12_16940 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E APA12_04010 bacteriophage-type DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E APA12_25430 mutY; DNA glycosylase A/G-specific MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E APA12_23560 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E APA12_12340 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E APA12_25410 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E APA12_10830 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E APA12_21210 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E APA12_21360 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E APA12_19090 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E APA12_21430 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E APA12_14430 uvrA; excinuclease UvrABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A E APA12_00110 uvrA; excinuclease UvrABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A E APA12_02400 uvrB; excinuclease UvrABC helicase subunit B UvrB K03702 uvrB; excinuclease ABC subunit B E APA12_10850 uvrC; excinuclease UvrABC subunit C UvrC K03703 uvrC; excinuclease ABC subunit C E APA12_10450 uvrD_rep; DNA helicase II UvrD/Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E APA12_21430 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E APA12_19090 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F APA12_09270 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F APA12_09280 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F APA12_09550 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F APA12_06440 rpoK; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F APA12_11060 DNA helicase transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E APA12_16730 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E APA12_07410 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E APA12_00200 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E APA12_14920 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E APA12_19490 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E APA12_12310 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E APA12_07220 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E APA12_25500 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E APA12_11460 dnaC; DNA polymerase III delta prime subunit DnaC K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E APA12_08710 DNA polymerase III exonuclease epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E APA12_20310 DNA polymerase III exonuclease epsilon subunit like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E APA12_00520 DNA polymerase III gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E APA12_19090 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E APA12_10450 uvrD_rep; DNA helicase II UvrD/Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E APA12_25720 ssb; single-strand DNA binding protein Ssb K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E APA12_41760 recD_traA; DNA helicase RecD/TraA K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E APA12_00440 recA; DNA recombinase RecA K03553 recA; recombination protein RecA E APA12_26260 ruvA; Holliday junction resolvase RusA K03550 ruvA; holliday junction DNA helicase RuvA E APA12_26250 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E APA12_26270 ruvC; Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E APA12_18330 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E APA12_00440 recA; DNA recombinase RecA K03553 recA; recombination protein RecA E APA12_06980 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E APA12_12300 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E APA12_11040 recG; DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E APA12_21360 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E APA12_19410 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E APA12_00540 recR; DNA recombinase RecR K06187 recR; recombination protein RecR E APA12_19080 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E APA12_26260 ruvA; Holliday junction resolvase RusA K03550 ruvA; holliday junction DNA helicase RuvA E APA12_26250 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E APA12_26270 ruvC; Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E APA12_26100 uvrD_rep; DNA helicase II UvrD/Rep K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E APA12_26110 nuclease K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E APA12_41090 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F APA12_24320 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F APA12_12290 DNA gyrase subunit B Hsp90-like ATPase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F APA12_07530 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F APA12_40350 hu; histone-like bacterial DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F APA12_26450 hu; histone-like bacterial DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F APA12_16460 hu; histone-like bacterial DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F APA12_41420 hu; histone-like bacterial DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F APA12_21360 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F APA12_19410 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F APA12_00540 recR; DNA recombinase RecR K06187 recR; recombination protein RecR F APA12_19090 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F APA12_16990 integration host factor DNA-binding alpha subunit K04764 ihfA; integration host factor subunit alpha F APA12_16930 integration host factor DNA-binding beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F APA12_12590 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F APA12_14430 uvrA; excinuclease UvrABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A F APA12_00110 uvrA; excinuclease UvrABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A F APA12_02400 uvrB; excinuclease UvrABC helicase subunit B UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D APA12_02490 impB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D APA12_00440 recA; DNA recombinase RecA K03553 recA; recombination protein RecA D APA12_10940 lexA; transcriptional regulator LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D APA12_19080 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D APA12_41300 hypothetical protein K14161 imuB; protein ImuB D APA12_25720 ssb; single-strand DNA binding protein Ssb K03111 ssb; single-strand DNA-binding protein D APA12_07310 recX; RecA repressor protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D APA12_17830 DNA helicase C2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D APA12_18370 acetyltransferase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APA12_02370 hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APA12_21030 phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APA12_12370 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D APA12_10600 ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D APA12_02280 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D APA12_10610 ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024