+D GENES KO
#
KEGG Orthology (KO) - Actinobacillus pleuropneumoniae JL03 (serotype 3)
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:apj00010]
D APJL_1156 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D APJL_1143 pfkA; phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APJL_1420 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D APJL_0619 glpX; GlpX-like protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D APJL_1261 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D APJL_1972 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D APJL_0460 gapA; glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D APJL_1262 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D APJL_0840 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D APJL_1132 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D APJL_0188 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D APJL_0776 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D APJL_0775 aceF; dihydrolipoamide s-acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_1221 adh1; putative alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APJL_1029 adh2; alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APJL_2006 adh3; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APJL_1013 galM; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D APJL_1966 hypothetical protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D APJL_0805 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D APJL_1338 crr; glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:apj00020]
D APJL_0482 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D APJL_0481 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_0478 sucD; succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D APJL_0479 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D APJL_1556 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D APJL_1555 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D APJL_1554 frdC; fumarate reductase, 15 kD hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C
D APJL_1553 frdD; fumarate reductase, 13 kD hydrophobic protein K00247 frdD; succinate dehydrogenase subunit D
D APJL_1792 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D APJL_1309 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D APJL_1446 mqo; malate/quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D APJL_0805 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D APJL_0776 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D APJL_0775 aceF; dihydrolipoamide s-acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:apj00030]
D APJL_1156 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D APJL_1324 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D APJL_1323 nagB1; 6-phosphogluconolactonase/Glucosamine-6-phosphateisomerase/deaminase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D APJL_1319 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D APJL_1856 rpe; D-ribulose-phosphate-3 epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D APJL_1003 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D APJL_0062 mipB; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D APJL_1475 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D APJL_1033 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D APJL_1704 rbsK2; sugar kinase, ribokinase family K00852 rbsK; ribokinase [EC:2.7.1.15]
D APJL_0778 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D APJL_1036 eda; 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D APJL_1595 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D APJL_1697 gntK; gluconate kinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D APJL_1037 rbsK1; sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D APJL_1261 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D APJL_1420 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D APJL_0619 glpX; GlpX-like protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D APJL_1143 pfkA; phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:apj00040]
D APJL_0641 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D APJL_1605 malate/L-lactate dehydrogenase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D APJL_1604 malate/L-lactate dehydrogenase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D APJL_1594 xylB1; sugar (pentulose and hexulose) kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D APJL_1730 sgaH; probable hexulose-6-phosphate synthase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D APJL_1735 sgbU; putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D APJL_1736 sgbE; L-ribulose-phosphate-4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D APJL_1856 rpe; D-ribulose-phosphate-3 epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D APJL_1954 xylB2; sugar (pentulose and hexulose) kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D APJL_1955 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D APJL_1716 fucI; L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3]
D APJL_1717 fucK; L-fuculo kinase K00879 fucK; L-fuculokinase [EC:2.7.1.51]
D APJL_1719 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:apj00051]
D APJL_2085 rbsK3; sugar kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D APJL_1414 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D APJL_0584 yhxB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APJL_0642 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APJL_1716 fucI; L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3]
D APJL_1717 fucK; L-fuculo kinase K00879 fucK; L-fuculokinase [EC:2.7.1.51]
D APJL_1719 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D APJL_1143 pfkA; phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APJL_1420 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D APJL_0619 glpX; GlpX-like protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D APJL_1662 mtlD; mannitol-1-phosphate/altronate dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D APJL_0360 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D APJL_1955 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D APJL_1261 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D APJL_1972 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D APJL_0359 fruA; phosphotransferase system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D APJL_1410 phosphotransferase system enzyme II,mannose-specific, factor IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APJL_1695 phosphotransferase system,mannose/fructose/N-acetylgalactosamine-specific component IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APJL_1694 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D APJL_1411 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D APJL_1693 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D APJL_1412 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D APJL_1663 mtlA; phosphotransferase system, mannitol-specific IIBC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D APJL_1226 hypothetical protein K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:apj00052]
D APJL_1013 galM; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D APJL_1012 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D APJL_1011 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D APJL_1314 galE; UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D APJL_0641 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D APJL_1014 lacZ; beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D APJL_1492 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D APJL_1143 pfkA; phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APJL_2084 scrB; sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D APJL_1039 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:apj00053]
D APJL_1595 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D APJL_1731 PTS system Enzyme II-A permease component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D APJL_1748 sgaB; phosphotransferase system, galactitol-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APJL_1732 sgaT; putative PTS system Enzyme II sga subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APJL_1747 ulaA; ascorbate-specific permease IIC component UlaA K03475 ulaA; ascorbate PTS system EIIC component
D APJL_1733 ulaG; probable L-ascorbate-6-phosphate lactonase UlaG K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
D APJL_1730 sgaH; probable hexulose-6-phosphate synthase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D APJL_1735 sgbU; putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D APJL_1736 sgbE; L-ribulose-phosphate-4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D APJL_1605 malate/L-lactate dehydrogenase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D APJL_1604 malate/L-lactate dehydrogenase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D APJL_1594 xylB1; sugar (pentulose and hexulose) kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:apj00500]
D APJL_1333 ptsB; phosphotransferase system enzyme II,sucrose-specific, factor IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D APJL_2084 scrB; sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D APJL_1039 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D APJL_0641 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D APJL_0364 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D APJL_0365 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D APJL_0362 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D APJL_1244 glgP; glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D APJL_0366 glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D APJL_0363 glgX; glycogen operon protein K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D APJL_1252 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D APJL_1338 crr; glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D APJL_1156 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D APJL_2085 rbsK3; sugar kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:apj00520]
D APJL_1130 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D APJL_1110 dspB; N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D APJL_1338 crr; glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D APJL_0440 N-acetyl-D-glucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D APJL_1791 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D APJL_1790 nagB2; glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D APJL_2085 rbsK3; sugar kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D APJL_1664 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D APJL_1476 mrsA; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D APJL_0581 glmU; glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D APJL_1563 N-acetylmuramic acid 6-phosphate etherase/MurNAc-6-P etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D APJL_1562 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D APJL_1299 murA; UDP-N-Acetyllglucosamine-1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D APJL_1893 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D APJL_1788 putative N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D APJL_1787 nanE; N-acetylmannosamine-6-P epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D APJL_1789 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D APJL_1580 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D APJL_1579 wecC; UDP-N-acetyl-D-mannosamininuronic aciddehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D APJL_0641 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D APJL_1012 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D APJL_1011 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D APJL_1314 galE; UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D APJL_1492 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D APJL_1410 phosphotransferase system enzyme II,mannose-specific, factor IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APJL_1695 phosphotransferase system,mannose/fructose/N-acetylgalactosamine-specific component IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APJL_1694 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D APJL_1411 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D APJL_1693 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D APJL_1412 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D APJL_1156 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D APJL_1414 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D APJL_0584 yhxB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APJL_0642 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APJL_0364 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:apj00620]
D APJL_0776 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D APJL_0775 aceF; dihydrolipoamide s-acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_1054 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D APJL_1029 adh2; alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APJL_2006 adh3; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APJL_1221 adh1; putative alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APJL_0636 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D APJL_0635 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D APJL_0188 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D APJL_1511 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D APJL_1907 accB; probable biotin carboxyl carrier protein ofacetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D APJL_1908 accC; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D APJL_0626 accD; acetyl-CoA carboxylase carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D APJL_0144 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APJL_1891 lldD; L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D APJL_0685 dld; D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D APJL_0182 gloA1; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D APJL_0439 gloB; probable hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D APJL_0124 glyoxalase II family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D APJL_1394 oadA; oxaloacetate decarboxylase alpha chain K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D APJL_1395 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D APJL_1393 Na+-transporting methylmalonyl-CoA/oxaloacetatedecarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D APJL_1309 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D APJL_1446 mqo; malate/quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D APJL_1792 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D APJL_1556 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D APJL_1555 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D APJL_1554 frdC; fumarate reductase, 15 kD hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C
D APJL_1553 frdD; fumarate reductase, 13 kD hydrophobic protein K00247 frdD; succinate dehydrogenase subunit D
D APJL_0355 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D APJL_0805 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D APJL_0414 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:apj00630]
D APJL_1309 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D APJL_1005 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
D APJL_2090 putative 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D APJL_1936 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D APJL_1987 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APJL_0212 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_0143 grk; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D APJL_1721 fucO; lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
D APJL_1036 eda; 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D APJL_0905 bisC2; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D APJL_0904 bisC1; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D APJL_0906 hybA1; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D APJL_0907 fdnI; formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
C 00640 Propanoate metabolism [PATH:apj00640]
D APJL_0636 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D APJL_0635 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_1054 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D APJL_0900 fadJ; fatty oxidation complex, alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APJL_1511 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D APJL_1907 accB; probable biotin carboxyl carrier protein ofacetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D APJL_1908 accC; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D APJL_0626 accD; acetyl-CoA carboxylase carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D APJL_0479 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D APJL_0478 sucD; succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D APJL_1523 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D APJL_1721 fucO; lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
C 00650 Butanoate metabolism [PATH:apj00650]
D APJL_0900 fadJ; fatty oxidation complex, alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APJL_1029 adh2; alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APJL_1395 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D APJL_1556 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D APJL_1555 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D APJL_1554 frdC; fumarate reductase, 15 kD hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C
D APJL_1553 frdD; fumarate reductase, 13 kD hydrophobic protein K00247 frdD; succinate dehydrogenase subunit D
D APJL_1054 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D APJL_0729 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APJL_0099 ilvG; acetohydroxy acid synthase II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APJL_0730 ilvH; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D APJL_0098 ilvM; acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:apj00660]
D APJL_0729 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APJL_0099 ilvG; acetohydroxy acid synthase II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APJL_0730 ilvH; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D APJL_0098 ilvM; acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D APJL_0479 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D APJL_0478 sucD; succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D APJL_0140 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D APJL_0139 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D APJL_0458 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:apj00562]
D APJL_0207 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D APJL_1972 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:apj00190]
D APJL_1282 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D APJL_1556 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D APJL_1555 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D APJL_1554 frdC; fumarate reductase, 15 kD hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C
D APJL_1553 frdD; fumarate reductase, 13 kD hydrophobic protein K00247 frdD; succinate dehydrogenase subunit D
D APJL_0308 cydA; cytochrome D ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D APJL_0309 cydB; cytochrome D ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D APJL_1681 atpA; ATP synthase alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D APJL_1679 atpD; ATP synthase beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D APJL_1680 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D APJL_1682 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D APJL_1678 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D APJL_1685 atpB; ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D APJL_1683 atpF; ATP synthase B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D APJL_1684 atpE; ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D APJL_1943 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:apj00680]
D APJL_1221 adh1; putative alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APJL_1217 putative esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D APJL_0905 bisC2; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D APJL_0904 bisC1; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D APJL_0906 hybA1; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D APJL_0907 fdnI; formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D APJL_0212 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D APJL_2090 putative 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D APJL_1132 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D APJL_0355 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D APJL_1309 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D APJL_1261 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D APJL_1420 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D APJL_0619 glpX; GlpX-like protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D APJL_1143 pfkA; phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APJL_1834 torA; trimethylamine-n-oxide reductase precursor K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D APJL_1835 torC2; cytochrome c-type protein K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D APJL_1833 torD; trimethylamine-n-oxide oxidoreductase K03533 torD; TorA specific chaperone
D APJL_0687 torY; cytochrome c-type protein TorY K07821 torY; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorY
D APJL_0686 torZ; trimethylamine-N-oxide reductase 2 K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D APJL_0636 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D APJL_0635 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D APJL_0840 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D APJL_1474 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D APJL_0700 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D APJL_1241 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:apj00910]
D APJL_1461 napA; periplasmic nitrate reductase NapA K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D APJL_1458 napB; nitrate reductase cytochrome c-type subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D APJL_0100 nrfA; nitrate reductase, cytochrome c552 K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D APJL_2086 sufI2; Copper-containing nitrite reductase precursor K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D APJL_1574 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D APJL_0452 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D APJL_1987 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APJL_1332 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00920 Sulfur metabolism [PATH:apj00920]
D APJL_1887 sbp; sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D APJL_1888 cysU; sulfate ABC transporter permease protein K02046 cysU; sulfate/thiosulfate transport system permease protein
D APJL_1889 cysW; sulfate ABC transporter permease protein K02047 cysW; sulfate/thiosulfate transport system permease protein
D APJL_1890 cysA; ABC-type sulfate/molybdate transport systems, ATPase component K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D APJL_1883 cysN; sulfate adenylate transferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D APJL_1884 cysD; sulfate adenylate transferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D APJL_1325 cysQ; 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D APJL_1885 cysH; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D APJL_1882 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D APJL_1881 cysI; putative sulphite reductase beta subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D APJL_0509 Sulfide:quinone oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D APJL_0079 pspE; rhodanese-related sulfur transferase K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D APJL_1537 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D APJL_0254 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D APJL_0467 mET2; homoserine acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D APJL_0679 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D APJL_1705 dmsA; anaerobic dimethyl sulfoxide reductase chain A precursor K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D APJL_1706 dmsB; anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D APJL_1707 dmsC; anaerobic dimethyl sulfoxide reductase chain C/DMSO reductase anchor subunit K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:apj00061]
D APJL_1511 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D APJL_1907 accB; probable biotin carboxyl carrier protein ofacetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D APJL_1908 accC; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D APJL_0626 accD; acetyl-CoA carboxylase carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D APJL_1855 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D APJL_2041 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D APJL_1402 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D APJL_1073 fabB; 3-oxoacyl-(acyl-carrier-protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D APJL_2040 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D APJL_1932 fabA; 3-hydroxydecanoyl-(acyl-carrier protein) dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D APJL_0432 fabZ; (3R)-hydroxymyristoyl-acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D APJL_0756 fabI; enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D APJL_0794 dioxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D APJL_1445 fAA1; long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APJL_0418 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:apj00071]
D APJL_0899 fadI; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D APJL_0900 fadJ; fatty oxidation complex, alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APJL_1445 fAA1; long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APJL_0418 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APJL_1221 adh1; putative alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APJL_1029 adh2; alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APJL_2006 adh3; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:apj00561]
D APJL_0143 grk; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APJL_0083 dhaK; dihydroxyacetone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D APJL_0082 dAK1; dihydroxyacetone kinase K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D APJL_0081 dhaM; PTS-dependent dihydroxyacetone kinase,phosphotransferase subunit K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D APJL_0393 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D APJL_1126 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D APJL_1403 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D APJL_1359 predicted membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D APJL_1513 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D APJL_0770 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:apj00564]
D APJL_1536 gpsA; glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D APJL_0398 glpA; anaerobic glycerol-3-phosphate dehydrogenase,subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D APJL_0399 glpB; anaerobic glycerol-3-phosphate dehydrogenase,subunit B K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D APJL_0400 glpC; anaerobic glycerol-3-phosphate dehydrogenase,subunit C K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D APJL_1126 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D APJL_1359 predicted membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D APJL_1513 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D APJL_1613 cps3B; Glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
D APJL_0770 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D APJL_0437 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D APJL_0044 pssA; CDP-diacylglycerol--serineO-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D APJL_1432 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D APJL_0285 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D APJL_0204 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D APJL_0441 pgpB; phosphatidylglycerophosphatase B K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:apj00600]
D APJL_1014 lacZ; beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D APJL_1110 dspB; N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:apj00592]
D APJL_0899 fadI; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids
D APJL_0990 putative acyl CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:apj00230]
D APJL_1989 putative ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D APJL_1326 ADP compounds hydrolase, MutT/nudix family K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D APJL_0778 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D APJL_0450 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D APJL_1193 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D APJL_1125 purT2; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D APJL_1714 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D APJL_1109 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D APJL_0651 purK; phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D APJL_0649 purE; phosphoribosylaminoimidazole carboxylasecatalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D APJL_2068 purC; phosphoribosylaminoimidazole succinocarboxamide(SAICAR) synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D APJL_0831 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D APJL_0971 purH; AICAR transformylase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D APJL_0274 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D APJL_0771 5'-nucleotidase / UDP-sugar diphosphatase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D APJL_1974 surE; acid phosphatase stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D APJL_1032 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D APJL_0456 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D APJL_0678 hpt; hypoxanthine phosphoribosyl transferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D APJL_0587 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D APJL_0367 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D APJL_0491 HAM1 protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D APJL_0263 gpt; xanthine-guanine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D APJL_0585 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D APJL_0264 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D APJL_1009 nrdA; ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APJL_0149 nrdA_1; ribonucleoside-diphosphate reductase alpha subunit 1 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APJL_0148 nrdB_1; ribonucleoside-diphosphate reductase beta subunit 1 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D APJL_1010 nrdB; ribonucleoside-diphosphate reductase, beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D APJL_0164 Oxygen-sensitive ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D APJL_0328 dgt; dGTP triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D APJL_1861 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D APJL_0707 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D APJL_1072 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D APJL_1091 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D APJL_0146 predicted Rossmann fold nucleotide-binding protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D APJL_0637 ushA; 5'-nucleotidase/2', 3'-cyclic phosphodiesterase and related esterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D APJL_1779 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D APJL_1311 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D APJL_0624 mazG; MazG protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D APJL_1988 icc; 3-prime,5-prime cyclic nucleotide phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D APJL_0762 apaH; bis(5'-nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D APJL_1883 cysN; sulfate adenylate transferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D APJL_1884 cysD; sulfate adenylate transferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D APJL_0825 transthyretin-like periplasmic protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D APJL_1649 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D APJL_1650 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D APJL_1651 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D APJL_1332 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:apj00240]
D APJL_0777 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D APJL_0333 pryE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D APJL_0738 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D APJL_0562 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D APJL_0367 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D APJL_0624 mazG; MazG protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D APJL_1088 putative MAF protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D APJL_0137 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D APJL_0743 cmkA; cytidylate kinase 1 K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D APJL_0842 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D APJL_0771 5'-nucleotidase / UDP-sugar diphosphatase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D APJL_1974 surE; acid phosphatase stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D APJL_0133 putative haloacid dehalogenase-like hydrolase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D APJL_1878 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D APJL_0419 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D APJL_0422 pyrR; PyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D APJL_0637 ushA; 5'-nucleotidase/2', 3'-cyclic phosphodiesterase and related esterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D APJL_1779 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D APJL_0146 predicted Rossmann fold nucleotide-binding protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D APJL_1361 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D APJL_0164 Oxygen-sensitive ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D APJL_0843 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D APJL_1009 nrdA; ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APJL_0149 nrdA_1; ribonucleoside-diphosphate reductase alpha subunit 1 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APJL_0148 nrdB_1; ribonucleoside-diphosphate reductase beta subunit 1 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D APJL_1010 nrdB; ribonucleoside-diphosphate reductase, beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D APJL_1853 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D APJL_2015 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D APJL_0617 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D APJL_0116 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D APJL_0495 probable NADP-dependent dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:apj00250]
D APJL_0652 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APJL_0650 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D APJL_0136 ansB; L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D APJL_1876 asnA; asparagine synthetase A K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D APJL_1061 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D APJL_1107 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D APJL_0447 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D APJL_1201 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D APJL_1091 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D APJL_0831 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D APJL_0452 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D APJL_0107 putA; 1-pyrroline-5-carboxylate dehydrogenase/proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D APJL_1987 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APJL_1664 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D APJL_0450 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:apj00260]
D APJL_0005 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D APJL_0255 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D APJL_0278 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D APJL_1524 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D APJL_0212 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D APJL_2090 putative 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D APJL_0143 grk; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D APJL_0840 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D APJL_1474 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D APJL_0700 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D APJL_1241 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D APJL_0495 probable NADP-dependent dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_0044 pssA; CDP-diacylglycerol--serineO-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D APJL_0868 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D APJL_1477 ilvA; threonine deaminase (dehydratase) K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D APJL_1321 racX; RacX protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D APJL_0497 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D APJL_0496 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D APJL_2023 argD1; PLP-dependent aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D APJL_2024 ddc; L-2,4-diaminobutyrate decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:apj00270]
D APJL_1537 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D APJL_0254 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D APJL_0335 metC1; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D APJL_1175 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D APJL_1096 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D APJL_1670 mtn; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D APJL_0456 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D APJL_1229 luxS; autoinducer-2 production protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D APJL_0005 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D APJL_0467 mET2; homoserine acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D APJL_0679 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D APJL_0699 metC2; putative cystathionine beta-lyase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D APJL_0072 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D APJL_1439 gshA; gamma-glutamylcysteine synthetase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D APJL_0652 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APJL_1321 racX; RacX protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D APJL_1309 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D APJL_0868 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D APJL_1474 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D APJL_0700 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:apj00280]
D APJL_0072 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_0900 fadJ; fatty oxidation complex, alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APJL_0899 fadI; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D APJL_1213 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:apj00290]
D APJL_1477 ilvA; threonine deaminase (dehydratase) K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D APJL_0140 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D APJL_0139 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D APJL_0458 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D APJL_0729 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APJL_0099 ilvG; acetohydroxy acid synthase II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APJL_0730 ilvH; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D APJL_0098 ilvM; acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D APJL_1897 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D APJL_0097 ilvD; dihydroxyacid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D APJL_0072 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D APJL_1061 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D APJL_0414 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:apj00300]
D APJL_0005 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D APJL_0911 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D APJL_0680 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D APJL_1904 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D APJL_0249 argD2; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D APJL_1917 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D APJL_1558 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D APJL_1551 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D APJL_0014 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D APJL_0015 murF; UDP-MurNAc-pentapeptide synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:apj00310]
D APJL_0481 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_0900 fadJ; fatty oxidation complex, alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APJL_1321 racX; RacX protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:apj00220]
D APJL_1331 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D APJL_0447 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D APJL_1201 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D APJL_1649 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D APJL_1650 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D APJL_1651 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D APJL_1987 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APJL_0452 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D APJL_1332 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D APJL_0652 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APJL_1061 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D APJL_0696 argA; amino-acid acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D APJL_0248 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D APJL_0247 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D APJL_0249 argD2; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D APJL_1101 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:apj00330]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APJL_0161 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D APJL_0107 putA; 1-pyrroline-5-carboxylate dehydrogenase/proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D APJL_0896 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D APJL_1998 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D APJL_0652 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:apj00340]
D APJL_2069 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D APJL_2078 hisI; phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D APJL_2076 hisA; phosphoribosylformimino-5-aminoimidazolecarboxamide ribonucleotide (ProFAR) isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D APJL_2075 hisH; glutamine amidotransferase K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D APJL_2077 hisF; imidazoleglycerol-phosphate synthase K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D APJL_2073 hisB; imidazoleglycerol-phosphate dehydratase/histidinol-phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D APJL_0698 hisC1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APJL_2071 hisC2; histidinol-phosphate aminotransferase/Tyrosine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APJL_2070 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:apj00350]
D APJL_0652 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APJL_0698 hisC1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APJL_2071 hisC2; histidinol-phosphate aminotransferase/Tyrosine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APJL_1221 adh1; putative alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APJL_1029 adh2; alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APJL_2006 adh3; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APJL_1367 hpaC; 4-hydroxyphenylacetic acid hydroxylase putative coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
C 00360 Phenylalanine metabolism [PATH:apj00360]
D APJL_0652 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APJL_0698 hisC1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APJL_2071 hisC2; histidinol-phosphate aminotransferase/Tyrosine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:apj00380]
D APJL_0481 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_0900 fadJ; fatty oxidation complex, alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APJL_1005 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:apj00400]
D APJL_0615 aroG; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D APJL_0186 aroF; 3-deoxy-D-arabinoheptulosonate-7-phosphatesynthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D APJL_0194 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D APJL_1905 aroQ; probable 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D APJL_1158 aroE; dehydroshikimate reductase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D APJL_0195 aroK; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71]
D APJL_0697 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D APJL_0749 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D APJL_1183 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D APJL_1184 pabA; anthranilate/para-aminobenzoate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D APJL_1185 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D APJL_0870 trpCF; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D APJL_0497 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D APJL_0496 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D APJL_0185 tyrA; prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D APJL_1051 pheA; prephenate dehydratase / chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D APJL_0652 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APJL_0698 hisC1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APJL_2071 hisC2; histidinol-phosphate aminotransferase/Tyrosine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:apj00410]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APJL_0900 fadJ; fatty oxidation complex, alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:apj00430]
D APJL_0635 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D APJL_0636 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:apj00450]
D APJL_0679 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D APJL_0335 metC1; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D APJL_1175 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D APJL_0084 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D APJL_1883 cysN; sulfate adenylate transferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D APJL_1884 cysD; sulfate adenylate transferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D APJL_0343 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D APJL_1590 selA; L-seryl-tRNA (Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D APJL_0368 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:apj00460]
D APJL_0650 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D APJL_0136 ansB; L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D APJL_1876 asnA; asparagine synthetase A K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D APJL_0212 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:apj00470]
D APJL_0260 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D APJL_0021 ddlB; D-alanine-D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D APJL_1321 racX; RacX protein K25316 racX; amino-acid racemase [EC:5.1.1.10]
D APJL_1880 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D APJL_0017 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D APJL_1558 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D APJL_1551 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:apj00480]
D APJL_1439 gshA; gamma-glutamylcysteine synthetase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D APJL_1116 pepA; aminopeptidase A/I K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D APJL_0409 pepB; peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D APJL_1358 pepN; aminopeptidase N protein K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D APJL_0262 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D APJL_1550 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D APJL_1648 ureX; UreX K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D APJL_1255 lpd; glutathione oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D APJL_1319 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D APJL_1324 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D APJL_1507 hybrid peroxiredoxin hyPrx5 K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:apj00511]
D APJL_1014 lacZ; beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D APJL_1110 dspB; N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:apj00540]
D APJL_0025 lpxC; UDP-3-O-acyl-GlcNAc deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D APJL_0433 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D APJL_1844 lpxH; UDP-2,3 diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D APJL_0008 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D APJL_1290 lpxK; tetraacyldisaccharide 4' kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D APJL_0408 probable phosphosugar isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D APJL_2091 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D APJL_0051 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D APJL_0085 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D APJL_1151 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D APJL_0912 lpxL; lipid A acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D APJL_0173 lpxM; lipid A acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D APJL_0916 kdkA; 3-deoxy-D-mannooctulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D APJL_0804 lpcA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D APJL_0423 waaE; ADP-heptose synthase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D APJL_0855 probable phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D APJL_1742 gmhD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D APJL_1427 rfaC; lipopolysaccharide heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D APJL_1428 rfaF; ADP-heptose LPS heptosyltransferase K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D APJL_1150 hypothetical protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:apj00542]
D APJL_1582 wecA; undecaprenyl-phosphatealpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:apj00541]
D APJL_0641 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D APJL_1314 galE; UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D APJL_1492 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D APJL_1497 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D APJL_1577 rffA; Lipopolysaccharide biosynthesis protein RffA K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D APJL_1578 rffC; Lipopolysaccharide biosynthesis protein RffC K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D APJL_1414 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D APJL_0584 yhxB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APJL_0642 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APJL_0581 glmU; glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D APJL_1580 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D APJL_1579 wecC; UDP-N-acetyl-D-mannosamininuronic aciddehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:apj00550]
D APJL_1299 murA; UDP-N-Acetyllglucosamine-1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D APJL_1893 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D APJL_0020 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D APJL_0017 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D APJL_0014 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D APJL_0021 ddlB; D-alanine-D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D APJL_0015 murF; UDP-MurNAc-pentapeptide synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D APJL_0438 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D APJL_0016 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase E K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D APJL_0019 murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D APJL_0505 Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D APJL_0196 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D APJL_1859 ponB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D APJL_1632 mrdA; penicillin binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D APJL_0013 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D APJL_1629 dacA; penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D APJL_0955 dacB; penicillin-binding protein 4, D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:apj00552]
D APJL_1582 wecA; undecaprenyl-phosphatealpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D APJL_1611 cps3D; teichoic acid biosynthesis protein K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
D APJL_1614 cps3A; Cps2A K18704 tarL; CDP-ribitol ribitolphosphotransferase / teichoic acid ribitol-phosphate polymerase [EC:2.7.8.14 2.7.8.47]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:apj00543]
D APJL_1582 wecA; undecaprenyl-phosphatealpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D APJL_1571 wecG; putative UDP-N-acetyl-D-mannosaminuronic acidtransferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D APJL_1573 wecF; TDP-Fuc4NAc:lipid II Fuc4NAc transferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D APJL_1970 pgaC; biofilm PGA synthesis N-glycosyltransferase PgaC K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D APJL_1537 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:apj00730]
D APJL_0523 thiF; putative thiamine biosynthesis protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D APJL_0941 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D APJL_1090 thiI; thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D APJL_0527 thiH; thiamine biosynthesis protein K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D APJL_0208 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D APJL_0526 thiG2; putative thiamine biosynthesis protein K03149 thiG; thiazole synthase [EC:2.8.1.10]
D APJL_0525 thiG1; putative thiamine biosynthesis protein K03149 thiG; thiazole synthase [EC:2.8.1.10]
D APJL_0203 thiL; thiamin-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D APJL_0131 putative GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D APJL_0747 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D APJL_1311 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D APJL_0528 putative transcription activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:apj00740]
D APJL_0404 ribA; riboflavin biosynthesis protein ribA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D APJL_0402 ribD; riboflavin-specific deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D APJL_0405 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D APJL_0403 ribE; riboflavin synthase, alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D APJL_0046 ribF; riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D APJL_1367 hpaC; 4-hydroxyphenylacetic acid hydroxylase putative coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D APJL_1989 putative ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D APJL_0344 ymfB; putative Nudix hydrolase ymfB K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D APJL_0734 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:apj00750]
D APJL_2059 pdxH; pyridoxamine-5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D APJL_1510 pdxY; pyridoxine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D APJL_0700 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D APJL_0278 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D APJL_1524 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D APJL_0565 putative pyridoxine biosynthesis protein K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D APJL_0566 putative 2-deoxy-scyllo-inosose synthase subunit K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:apj00760]
D APJL_1032 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D APJL_0047 nadR; transcription regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D APJL_0771 5'-nucleotidase / UDP-sugar diphosphatase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D APJL_1974 surE; acid phosphatase stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D APJL_0624 mazG; MazG protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D APJL_0087 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D APJL_0213 pnnK; probable inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D APJL_0850 pntA; NAD/NADP transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D APJL_0849 pntB; NAD(P) transhydrogenase beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:apj00770]
D APJL_0729 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APJL_0099 ilvG; acetohydroxy acid synthase II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APJL_0730 ilvH; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D APJL_0098 ilvM; acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D APJL_1897 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D APJL_0097 ilvD; dihydroxyacid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D APJL_1539 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D APJL_2016 dfp; DNA/pantothenate metabolism flavoprotein K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D APJL_0624 mazG; MazG protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D APJL_1152 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D APJL_0888 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D APJL_1991 putative 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D APJL_1216 hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D APJL_0072 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:apj00780]
D APJL_0949 bioC; biotin synthesis protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D APJL_1073 fabB; 3-oxoacyl-(acyl-carrier-protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D APJL_2040 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D APJL_0432 fabZ; (3R)-hydroxymyristoyl-acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D APJL_0756 fabI; enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D APJL_0950 hypothetical protein K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D APJL_0951 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D APJL_0952 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D APJL_0609 bioD1; probable dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D APJL_0948 bioD2; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D APJL_0118 bioB; biotin synthetase K01012 bioB; biotin synthase [EC:2.8.1.6]
D APJL_1892 birA; biotin operon represssor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:apj00785]
D APJL_1627 lipB; lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D APJL_1626 lipA1; lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_0776 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D APJL_0775 aceF; dihydrolipoamide s-acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D APJL_0482 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D APJL_0481 sucB; dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
C 00790 Folate biosynthesis [PATH:apj00790]
D APJL_0915 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D APJL_0747 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D APJL_1170 mutT2; NTP pyrophosphohydrolase including oxidative damage repair enzyme K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D APJL_1360 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D APJL_0178 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D APJL_1920 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D APJL_0895 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D APJL_0627 folC; folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D APJL_0404 ribA; riboflavin biosynthesis protein ribA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D APJL_1167 trpG; anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D APJL_1165 pabB; p-aminobenzoate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D APJL_1164 branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D APJL_1112 conserved possible 6-pyruvoyltetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D APJL_1113 organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D APJL_1111 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D APJL_0854 possible GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D APJL_0688 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D APJL_0689 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D APJL_0691 moaE; molybdopterin converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D APJL_1543 mog; molybdopterin biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D APJL_1909 mobAB; probable molybdopterin-guanine dinucleotide biosynthesis protein K13818 mobAB; molybdopterin-guanine dinucleotide biosynthesis protein [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:apj00670]
D APJL_0895 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D APJL_0493 fhs; putative formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D APJL_0909 folD; methylenetetrahydrofolate dehydrogenase (NADP+)/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D APJL_0212 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D APJL_0971 purH; AICAR transformylase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D APJL_1620 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D APJL_0116 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D APJL_0865 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D APJL_0110 hypothetical protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:apj00860]
D APJL_1286 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D APJL_0425 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D APJL_1583 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D APJL_2036 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D APJL_1028 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D APJL_1027 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D APJL_0113 hemE; uroporphyrinogen-III decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D APJL_0982 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D APJL_1624 flavodoxin K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D APJL_1983 hemH; protoheme ferro-lyase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D APJL_1026 hemX; putative uroporphyrinogen IIIC-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D APJL_1886 cysG; uroporphyrinogen-III methylase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D APJL_1066 hugZ; Putative heme iron utilization protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:apj00130]
D APJL_1879 ubiC; 4-hydroxybenzoate synthetase/chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D APJL_0829 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D APJL_1471 ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D APJL_0734 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D APJL_0349 visC; probable monoxygenase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D APJL_0296 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D APJL_0345 ubiH; UbiH protein (2-octaprenyl-6-methoxyphenol) K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D APJL_2030 ubiE; ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D APJL_1780 ubiF; putative2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D APJL_1060 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D APJL_1785 menD; menaquinone biosynthesis protein K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D APJL_1784 predicted hydrolase or acyltransferase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D APJL_0369 menC; O-succinylbenzoate-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D APJL_0752 menE; O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D APJL_1860 menB; dihydroxynaphthoic acid synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D APJL_1455 hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D APJL_1483 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D APJL_1464 putative NAD(P)H oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:apj00900]
D APJL_0208 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D APJL_0428 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D APJL_0807 ispD; 2-C-methyl-D-erythritol 4-phosphatecytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D APJL_0779 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D APJL_0808 ispF; IspF K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D APJL_1198 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphatesynthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D APJL_1546 ispH; hydroxymethylbutenyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D APJL_0734 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D APJL_0813 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D APJL_2043 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D APJL_0438 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:apj00907]
D APJL_0900 fadJ; fatty oxidation complex, alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APJL_0899 fadI; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D APJL_1003 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D APJL_1497 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D APJL_1060 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D APJL_1497 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:apj00332]
D APJL_0896 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D APJL_1998 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:apj00261]
D APJL_1883 cysN; sulfate adenylate transferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D APJL_1884 cysD; sulfate adenylate transferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D APJL_0005 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D APJL_0911 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D APJL_0680 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:apj00521]
D APJL_0207 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D APJL_1497 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
D APJL_1497 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:apj00401]
D APJL_0185 tyrA; prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D APJL_0652 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APJL_0698 hisC1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APJL_2071 hisC2; histidinol-phosphate aminotransferase/Tyrosine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D APJL_1183 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D APJL_1184 pabA; anthranilate/para-aminobenzoate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D APJL_2041 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D APJL_2040 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D APJL_0756 fabI; enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D APJL_1855 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:apj00999]
D APJL_1096 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D APJL_1158 aroE; dehydroshikimate reductase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:apj00362]
D APJL_0899 fadI; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D APJL_0900 fadJ; fatty oxidation complex, alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APJL_1395 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
C 00627 Aminobenzoate degradation [PATH:apj00627]
D APJL_0144 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D APJL_0734 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:apj00625]
D APJL_2006 adh3; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APJL_1221 adh1; putative alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APJL_1029 adh2; alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APJL_2061 aldA; putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
D APJL_1352 hyaB; Ni, Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D APJL_1349 hyaA; Ni, Fe-hydrogenase I small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
C 00642 Ethylbenzene degradation
D APJL_0899 fadI; acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
D APJL_1649 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D APJL_1650 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D APJL_1651 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:apj00930]
D APJL_1595 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D APJL_0900 fadJ; fatty oxidation complex, alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:apj00626]
D APJL_2006 adh3; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APJL_1221 adh1; putative alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APJL_1029 adh2; alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:apj03020]
D APJL_1762 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D APJL_1763 rpoC; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D APJL_1820 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D APJL_1862 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:apj03010]
D APJL_0742 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D APJL_0559 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D APJL_1801 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D APJL_1819 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D APJL_1812 rpS5; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D APJL_1192 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D APJL_1425 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D APJL_1809 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D APJL_0595 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D APJL_1794 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D APJL_1818 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D APJL_1426 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D APJL_1817 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D APJL_1808 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D APJL_1023 rpsO; ribosomal protein S15P/S13E K02956 RP-S15; small subunit ribosomal protein S15
D APJL_1822 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D APJL_1804 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D APJL_1190 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D APJL_1799 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D APJL_1586 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D APJL_1498 rpsU; 30S ribosomal protein s21 K02970 RP-S21; small subunit ribosomal protein S21
D APJL_1752 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D APJL_1798 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D APJL_1795 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D APJL_1796 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D APJL_1807 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D APJL_1810 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D APJL_1755 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D APJL_1189 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D APJL_1751 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D APJL_0594 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D APJL_1805 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D APJL_1814 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D APJL_1802 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D APJL_1821 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D APJL_1811 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D APJL_1825 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D APJL_0226 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D APJL_2047 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D APJL_1800 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D APJL_1797 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D APJL_1806 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D APJL_0517 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D APJL_2048 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D APJL_2018 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D APJL_1803 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D APJL_1813 ribosomal protein L30/L7E K02907 RP-L30; large subunit ribosomal protein L30
D APJL_1002 rpL31_2; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D APJL_1857 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D APJL_1404 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D APJL_2019 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D APJL_1984 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D APJL_0225 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D APJL_1816 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D APJL_1858 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D APJL_R007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R076 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R059 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R068 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R047 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R079 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R065 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R057 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R044 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R056 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R043 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R064 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R080 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:apj00970]
D APJL_T031 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APJL_T003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APJL_T078 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APJL_T066 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APJL_T045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APJL_T021 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APJL_T062 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APJL_T040 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APJL_T041 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APJL_T012 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APJL_T070 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APJL_T072 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APJL_T032 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APJL_T054 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APJL_T033 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APJL_T017 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D APJL_T023 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D APJL_T024 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D APJL_T058 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D APJL_T009 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D APJL_T050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APJL_T018 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APJL_T039 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APJL_T037 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APJL_T034 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APJL_T061 tRNA-His K14226 tRNA-His; tRNA His
D APJL_T002 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APJL_T008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APJL_T067 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APJL_T077 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APJL_T046 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APJL_T025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T015 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T038 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T073 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APJL_T074 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APJL_T075 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APJL_T013 tRNA-Met K14230 tRNA-Met; tRNA Met
D APJL_T026 tRNA-Met K14230 tRNA-Met; tRNA Met
D APJL_T014 tRNA-Met K14230 tRNA-Met; tRNA Met
D APJL_T019 tRNA-Met K14230 tRNA-Met; tRNA Met
D APJL_T071 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D APJL_T069 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D APJL_T022 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D APJL_T060 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D APJL_T042 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APJL_T081 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APJL_T082 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APJL_T006 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APJL_T049 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APJL_T048 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APJL_T052 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APJL_T053 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D APJL_T051 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D APJL_T027 tRNA-Val K14237 tRNA-Val; tRNA Val
D APJL_T028 tRNA-Val K14237 tRNA-Val; tRNA Val
D APJL_T029 tRNA-Val K14237 tRNA-Val; tRNA Val
D APJL_T030 tRNA-Val K14237 tRNA-Val; tRNA Val
D APJL_T016 tRNA-Val K14237 tRNA-Val; tRNA Val
D APJL_T063 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D APJL_1286 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D APJL_0674 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D APJL_0644 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D APJL_1169 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D APJL_0670 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D APJL_1836 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D APJL_1839 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D APJL_0220 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D APJL_0880 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D APJL_1590 selA; L-seryl-tRNA (Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D APJL_0925 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D APJL_0368 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D APJL_1620 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D APJL_1527 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D APJL_0884 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D APJL_0045 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D APJL_0815 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D APJL_0040 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D APJL_1867 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D APJL_1196 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D APJL_0602 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D APJL_0603 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D APJL_1501 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D APJL_1935 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:apj03060]
D APJL_1815 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D APJL_1749 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D APJL_0745 secG; preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D APJL_1083 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D APJL_1084 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D APJL_1082 yajC; preprotein translocase YajC subunit K03210 yajC; preprotein translocase subunit YajC
D APJL_1456 yidC; 60 kD inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D APJL_0244 secA; preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D APJL_1535 secB; protein export protein K03071 secB; preprotein translocase subunit SecB
D APJL_1778 ffh; signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D APJL_1364 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D APJL_2033 tatA; Sec-independent protein secretion pathway components K03116 tatA; sec-independent protein translocase protein TatA
D APJL_2034 tatB; sec-independent protein secretion pathway component K03117 tatB; sec-independent protein translocase protein TatB
D APJL_2035 tatC; sec-independent protein secretion pathway component K03118 tatC; sec-independent protein translocase protein TatC
D APJL_0535 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D APJL_1545 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:apj04122]
D APJL_0941 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D APJL_0092 sirA; SirA protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D APJL_0721 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D APJL_1677 Uncharacterized conserved protein involved inoxidation of intracellular sulfur K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D APJL_1676 putative uncharacterized protein involved inoxidation of intracellular sulfur K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D APJL_1675 putative uncharacterized protein involved inoxidation of intracellular sulfur K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D APJL_0283 putative sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D APJL_0159 trmU; tRNA(5-methylaminomethyl-2-thiouridylate)methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D APJL_0691 moaE; molybdopterin converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D APJL_0688 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D APJL_0690 moaD; molybdopterin converting factor, small subunit K03636 moaD; sulfur-carrier protein
D APJL_2096 sseA; rhodanese-related sulfur transferase K21028 ynjE; molybdopterin synthase sulfurtransferase [EC:2.8.1.11]
D APJL_0326 moeB; molybdopterin biosynthesis protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D APJL_0689 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D APJL_1543 mog; molybdopterin biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D APJL_1090 thiI; thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D APJL_0524 thiS; thiamine biosynthesis protein K03154 thiS; sulfur carrier protein
D APJL_0523 thiF; putative thiamine biosynthesis protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:apj03018]
D APJL_1940 nudH; (Di)nucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D APJL_1468 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D APJL_1132 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D APJL_0570 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D APJL_1503 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D APJL_0568 deaD; cold-shock DEAD box protein-A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D APJL_1135 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D APJL_0253 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D APJL_1143 pfkA; phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APJL_1953 dnaK; chaperone protein K04043 dnaK; molecular chaperone DnaK
D APJL_1030 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D APJL_2008 hfq; host factor-I protein Hfq K03666 hfq; host factor-I protein
D APJL_0177 pcnB; polyA polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:apj03030]
D APJL_1294 dnaQ; DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D APJL_1120 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D APJL_0273 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D APJL_1852 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D APJL_0886 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D APJL_2056 holD; DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D APJL_1531 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D APJL_0002 dnaN; DNA polymerase III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D APJL_0713 dnaB2; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D APJL_1499 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D APJL_0787 ssb; single stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D APJL_0448 rnh; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D APJL_0130 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D APJL_0500 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APJL_1315 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:apj03410]
D APJL_0898 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D APJL_0380 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D APJL_1775 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D APJL_2038 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D APJL_1979 tagI; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D APJL_0997 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D APJL_0375 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D APJL_0500 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APJL_0486 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D APJL_1315 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:apj03420]
D APJL_1357 mfd; transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D APJL_0786 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D APJL_0662 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D APJL_0287 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C
D APJL_1340 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D APJL_0500 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APJL_1315 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:apj03430]
D APJL_1635 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D APJL_2005 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D APJL_1128 mutH; DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D APJL_1340 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D APJL_0668 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D APJL_0812 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D APJL_0486 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D APJL_0787 ssb; single stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D APJL_1120 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D APJL_0002 dnaN; DNA polymerase III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D APJL_0273 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D APJL_0886 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D APJL_1852 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D APJL_1294 dnaQ; DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D APJL_1531 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D APJL_2056 holD; DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D APJL_1315 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D APJL_0193 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:apj03440]
D APJL_0486 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D APJL_0787 ssb; single stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D APJL_0003 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
D APJL_0538 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D APJL_0074 recR; recombination DNA repair protein K06187 recR; recombination protein RecR
D APJL_1163 recA; RecA protein K03553 recA; recombination protein RecA
D APJL_0500 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APJL_0295 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D APJL_1173 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D APJL_1863 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D APJL_0388 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D APJL_1927 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D APJL_0261 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D APJL_1120 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D APJL_0002 dnaN; DNA polymerase III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D APJL_0273 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D APJL_0886 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D APJL_1852 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D APJL_1294 dnaQ; DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D APJL_1531 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D APJL_2056 holD; DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D APJL_1050 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D APJL_1191 priB; primosomal replication protein K02686 priB; primosomal replication protein N
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:apj02010]
D APJL_1887 sbp; sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D APJL_1888 cysU; sulfate ABC transporter permease protein K02046 cysU; sulfate/thiosulfate transport system permease protein
D APJL_1889 cysW; sulfate ABC transporter permease protein K02047 cysW; sulfate/thiosulfate transport system permease protein
D APJL_1890 cysA; ABC-type sulfate/molybdate transport systems, ATPase component K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D APJL_0529 sulfonate/nitrate/taurine transport system substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D APJL_0522 nasD; ABC transporter, ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D APJL_0270 modA; molybdate-binding periplasmic protein, ABC transporter K02020 modA; molybdate transport system substrate-binding protein
D APJL_0269 modB; molybdenum ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D APJL_0268 modC; molybdenum ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D APJL_1619 modF; molybdate transport system ATP-binding protein K05776 modF; molybdate transport system ATP-binding protein
D APJL_1416 afuA1; AfuA protein K02012 afuA; iron(III) transport system substrate-binding protein
D APJL_0552 afuA2; iron(III) transport system substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D APJL_1417 afuB1; ABC-type thiamine transport system, permease component K02011 afuB; iron(III) transport system permease protein
D APJL_0553 afuB2; iron(III) transport system permease protein K02011 afuB; iron(III) transport system permease protein
D APJL_1418 afuC; ferric transport protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D APJL_0175 tbpA; thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein
D APJL_1335 thiP1; probable thiamin ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein
D APJL_1334 thiQ; conserved probable thiamin ABC transporter,ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D APJL_0386 potD2; spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D APJL_0292 potC; spermidine/putrescine transport system permease protein K11070 potC; spermidine/putrescine transport system permease protein
D APJL_0291 potB; spermidine/putrescine transport system permease protein K11071 potB; spermidine/putrescine transport system permease protein
D APJL_0290 potA; spermidine/putrescine transport ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D APJL_1249 malE; maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D APJL_1250 malF; ABC-type sugar transport systems, permease component K10109 malF; maltose/maltodextrin transport system permease protein
D APJL_1251 malG; ABC maltose transporter, permease subunit K10110 malG; maltose/maltodextrin transport system permease protein
D APJL_1248 malK; ABC-type sugar/spermidine/putrescine/iron/thiamine transport system, ATPase component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D APJL_1302 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D APJL_1303 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D APJL_1304 probable permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D APJL_1301 putative anti-sigma factor B antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D APJL_1305 ABC transporter ATP binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D APJL_1703 rbsB2; ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D APJL_1702 rbsC; ribose transport system permease protein K10440 rbsC; ribose transport system permease protein
D APJL_1701 rbsA; ribose transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D APJL_1700 rbsD; high affinity ribose transport protein K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D APJL_1452 rbsB1; periplasmic sugar-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APJL_0477 mglB; D-galactose transport system substrate-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APJL_1450 mglC; galactoside ABC transporter, permease protein K10541 mglC; methyl-galactoside transport system permease protein
D APJL_1451 mglA; ABC-type sugar (aldose) transport system, ATPase component K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D APJL_1956 xylF; D-xylose ABC transporter, periplasmic sugar-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D APJL_1958 xylH; D-xylose transport system permease protein K10544 xylH; D-xylose transport system permease protein
D APJL_1957 xylG; D-xylose ABC transporter, ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D APJL_1272 pstS; phosphate-binding periplasmic protein precursor K02040 pstS; phosphate transport system substrate-binding protein
D APJL_1271 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D APJL_1270 pstA; phosphate transport system permease K02038 pstA; phosphate transport system permease protein
D APJL_1269 pstB; phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D APJL_1371 artI; ABC-type amino acid transport system,periplasmic component K09997 artI; arginine transport system substrate-binding protein
D APJL_1369 artM1; arginine transport system permease protein K09998 artM; arginine transport system permease protein
D APJL_1370 artQ; arginine transport system permease protein K09999 artQ; arginine transport system permease protein
D APJL_1372 artP; arginine ABC transporter, ATP-binding protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D APJL_1690 amino acid ABC transporter, substrate-binding K02424 tcyA; L-cystine transport system substrate-binding protein
D APJL_1637 artM2; ABC-type amino acid transport system, permease component K10009 tcyB; L-cystine transport system permease protein
D APJL_1636 glnQ; ABC-type polar amino acid transport system, ATPase component K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D APJL_0921 plpB; outer membrane lipoprotein 2 precursor K02073 metQ; D-methionine transport system substrate-binding protein
D APJL_0922 hlpA; outer membrane lipoprotein precursor K02073 metQ; D-methionine transport system substrate-binding protein
D APJL_0923 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D APJL_0924 metN; D-methionine transport ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D APJL_0064 dppA2; dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_2060 hbpA2; heme-binding protein A K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_0866 hbpA1; heme-binding protein A precursor K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_0063 dppA1; dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_0065 dppB; dipeptide transport system permease protein K12369 dppB; dipeptide transport system permease protein
D APJL_0066 dppC; dipeptide transport system permease protein K12370 dppC; dipeptide transport system permease protein
D APJL_0067 dppD; dipeptide transport ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein
D APJL_0068 dppF; dipeptide transport ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D APJL_0802 sapA; peptide transport periplasmic protein K19226 sapA; cationic peptide transport system substrate-binding protein
D APJL_0801 sapB; peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein
D APJL_0800 sapC; peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein
D APJL_0799 sapD; peptide transport system ATP binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D APJL_1260 sapF; peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D APJL_2064 fhuD; ferrichrome-binding periplasmic protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D APJL_2065 fhuB; ferrichrome uptake protein K23228 fhuB; ferric hydroxamate transport system permease protein
D APJL_2063 fhuC; ABC-type cobalamin/Fe3+-siderophores transportsystems, ATPase components K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D APJL_1472 znuA; periplasmic zinc transporter K09815 znuA; zinc transport system substrate-binding protein
D APJL_0465 znuB; high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein
D APJL_0483 znuC; zinc ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D APJL_0129 yfeC; iron (chelated) transport system membrane protein K11605 sitC; manganese/iron transport system permease protein
D APJL_0128 yfeD; iron (chelated) transport system membrane protein K11606 sitD; manganese/iron transport system permease protein
D APJL_0280 yfeB; iron (chelated) transporter, ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein
D APJL_1655 cbiM; ABC-type Co2+ transport system, permease component K02007 cbiM; cobalt/nickel transport system permease protein
D APJL_1654 cbiQ; ABC-type cobalt transport system, permease component CbiQ and related transporter K02008 cbiQ; cobalt/nickel transport system permease protein
D APJL_1653 cbiO; predicted ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D APJL_1657 hypothetical protein K10094 cbiK; nickel transport protein
D APJL_1656 cbiL; putative cytoplasmic membrane protein CbiL K16915 cbiL; nickel transport protein
D APJL_1616 cpxC; capsule polysaccharide export transport system permease protein K10107 kpsE; capsular polysaccharide transport system permease protein
D APJL_1617 cpxB; capsule polysaccharide export transport system permease protein K09688 kpsM; capsular polysaccharide transport system permease protein
D APJL_1618 cpxA; capsule polysaccharide export transport system ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D APJL_2087 lolE; lipoprotein releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D APJL_2089 lolC; lipoprotein releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D APJL_2088 lolD; lipoprotein releasing system ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D APJL_1387 ccmD; heme exporter protein D K02196 ccmD; heme exporter protein D
D APJL_1388 ccmC; cytochrome c-type biogenesis protein K02195 ccmC; heme exporter protein C
D APJL_1389 ccmB; cytochrome c-type biogenesis protein K02194 ccmB; heme exporter protein B
D APJL_1390 ccmA2; cytochrome c-type biogenesis ATP-binding protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D APJL_1118 predicted permease K07091 lptF; lipopolysaccharide export system permease protein
D APJL_1119 predicted permease K11720 lptG; lipopolysaccharide export system permease protein
D APJL_0352 probable ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D APJL_1362 fstX; cell division protein K09811 ftsX; cell division transport system permease protein
D APJL_1363 fstE; cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D APJL_0781 msbA; ABC transporter ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D APJL_1345 apxIIIB; Toxin RTX-III translocation ATP-binding protein (RTX-III toxin determinant B) K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D APJL_1228 ABC transporter, putative ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D APJL_0833 cydC; ABC transporter, ATP-binding subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D APJL_0834 cydD; ABC transporter, ATP-binding subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D APJL_1849 ABC transporter, ATP-binding subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D APJL_0621 putative ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:apj02060]
D APJL_1337 ptsI; phosphoenolpyruvate phosphotransferase system enzyme I K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D APJL_1336 ptsH; PTS system phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D APJL_1338 crr; glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D APJL_1333 ptsB; phosphotransferase system enzyme II,sucrose-specific, factor IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D APJL_1663 mtlA; phosphotransferase system, mannitol-specific IIBC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D APJL_1410 phosphotransferase system enzyme II,mannose-specific, factor IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APJL_1695 phosphotransferase system,mannose/fructose/N-acetylgalactosamine-specific component IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APJL_1694 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D APJL_1411 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D APJL_1693 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D APJL_1412 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D APJL_1731 PTS system Enzyme II-A permease component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D APJL_1748 sgaB; phosphotransferase system, galactitol-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APJL_1732 sgaT; putative PTS system Enzyme II sga subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APJL_1747 ulaA; ascorbate-specific permease IIC component UlaA K03475 ulaA; ascorbate PTS system EIIC component
D APJL_0361 ptsN2; phosphotransferase systemmannitol/fructose-specific IIA domain K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D APJL_0359 fruA; phosphotransferase system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D APJL_0360 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D APJL_0351 ptsN1; PTS system, nitrogen regulatory IIA-like protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:apj03070]
D APJL_1344 apxIIID; RTX-III toxin determinant D K11003 hlyD; membrane fusion protein, hemolysin D
D APJL_1345 apxIIIB; Toxin RTX-III translocation ATP-binding protein (RTX-III toxin determinant B) K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D APJL_1083 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D APJL_1084 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D APJL_1749 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D APJL_0745 secG; preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D APJL_1815 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D APJL_1082 yajC; preprotein translocase YajC subunit K03210 yajC; preprotein translocase subunit YajC
D APJL_1456 yidC; 60 kD inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D APJL_0244 secA; preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D APJL_1364 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D APJL_1535 secB; protein export protein K03071 secB; preprotein translocase subunit SecB
D APJL_1778 ffh; signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D APJL_2033 tatA; Sec-independent protein secretion pathway components K03116 tatA; sec-independent protein translocase protein TatA
D APJL_2034 tatB; sec-independent protein secretion pathway component K03117 tatB; sec-independent protein translocase protein TatB
D APJL_2035 tatC; sec-independent protein secretion pathway component K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:apj02020]
D APJL_1267 phoR; phosphate regulon sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D APJL_1268 phoB; phosphate regulon transcriptional regulatory protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D APJL_0747 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D APJL_1272 pstS; phosphate-binding periplasmic protein precursor K02040 pstS; phosphate transport system substrate-binding protein
D APJL_0622 sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D APJL_0623 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D APJL_1306 degP; periplasmic serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D APJL_1080 ygiY; sensor protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D APJL_1079 ygiX; transcriptional regulatory protein K07666 qseB; two-component system, OmpR family, response regulator QseB
D APJL_1835 torC2; cytochrome c-type protein K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D APJL_1834 torA; trimethylamine-n-oxide reductase precursor K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D APJL_1833 torD; trimethylamine-n-oxide oxidoreductase K03533 torD; TorA specific chaperone
D APJL_0945 arcB; sensor histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D APJL_0049 arcA; aerobic respiration control protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D APJL_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D APJL_1329 dcuB2; anaerobic C4-dicarboxylate membrane transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D APJL_1559 dcuB1; anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D APJL_0489 narQ; nitrate/nitrite sensor protein K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D APJL_0059 narP; nitrate/nitrite response regulator protein K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D APJL_1556 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D APJL_1555 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D APJL_1554 frdC; fumarate reductase, 15 kD hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C
D APJL_1553 frdD; fumarate reductase, 13 kD hydrophobic protein K00247 frdD; succinate dehydrogenase subunit D
D APJL_0643 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D APJL_0548 rcpA; Flp pilus assembly protein, secretin K02280 cpaC; pilus assembly protein CpaC
D APJL_0546 tadZ; Flp pilus assembly protein, ATPase K02282 cpaE; pilus assembly protein CpaE
D APJL_0545 tadA; tight adherence protein A K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D APJL_0544 tadB; Flp pilus assembly protein K12510 tadB; tight adherence protein B
D APJL_0543 tadC; Flp pilus assembly protein K12511 tadC; tight adherence protein C
D APJL_0592 glnD; uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D APJL_1544 glnB; putative nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D APJL_1987 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APJL_1349 hyaA; Ni, Fe-hydrogenase I small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D APJL_1352 hyaB; Ni, Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D APJL_2012 catabolite gene activator (cAMP receptor protein) K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D APJL_0308 cydA; cytochrome D ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D APJL_0309 cydB; cytochrome D ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D APJL_1615 cpxD; HexD, capsule biosynthetic locus protein K01991 wza; polysaccharide biosynthesis/export protein
D APJL_1580 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D APJL_1579 wecC; UDP-N-acetyl-D-mannosamininuronic aciddehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:apj02024]
D APJL_1229 luxS; autoinducer-2 production protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D APJL_2008 hfq; host factor-I protein Hfq K03666 hfq; host factor-I protein
D APJL_1183 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D APJL_1184 pabA; anthranilate/para-aminobenzoate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D APJL_0615 aroG; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D APJL_0186 aroF; 3-deoxy-D-arabinoheptulosonate-7-phosphatesynthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D APJL_1080 ygiY; sensor protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D APJL_1079 ygiX; transcriptional regulatory protein K07666 qseB; two-component system, OmpR family, response regulator QseB
D APJL_1445 fAA1; long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APJL_0418 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APJL_2012 catabolite gene activator (cAMP receptor protein) K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D APJL_0402 ribD; riboflavin-specific deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D APJL_0937 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D APJL_0030 ABC-type dipeptide transport system, periplasmic protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APJL_1019 putative oligopeptide transporter,periplasmic-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APJL_0859 putative ABC transporter periplasmic binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APJL_0860 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D APJL_0029 gsiC; glutathione permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D APJL_0028 nickel transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D APJL_0861 ABC transporter, ATP-binding protein and permease protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D APJL_0027 peptide transport system ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D APJL_0862 ABC transporter, ATP-binding subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D APJL_1456 yidC; 60 kD inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D APJL_1749 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D APJL_0745 secG; preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D APJL_1815 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D APJL_1082 yajC; preprotein translocase YajC subunit K03210 yajC; preprotein translocase subunit YajC
D APJL_0244 secA; preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D APJL_1364 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D APJL_1535 secB; protein export protein K03071 secB; preprotein translocase subunit SecB
D APJL_1778 ffh; signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:apj02030]
D APJL_1249 malE; maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D APJL_1703 rbsB2; ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D APJL_1452 rbsB1; periplasmic sugar-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APJL_0477 mglB; D-galactose transport system substrate-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APJL_0064 dppA2; dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_2060 hbpA2; heme-binding protein A K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_0866 hbpA1; heme-binding protein A precursor K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_0063 dppA1; dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
C 02040 Flagellar assembly [PATH:apj02040]
D APJL_1690 amino acid ABC transporter, substrate-binding K02424 tcyA; L-cystine transport system substrate-binding protein
D APJL_1500 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D APJL_1132 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:apj01501]
D APJL_1313 ampG; permease and possible signal transducer K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D APJL_1130 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D APJL_0578 putative HTH-type transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D APJL_0579 membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D APJL_0580 acriflavine resistance protein K18138 acrB; multidrug efflux pump
D APJL_0196 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D APJL_1632 mrdA; penicillin binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D APJL_0013 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:apj01502]
D APJL_0021 ddlB; D-alanine-D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D APJL_0260 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D APJL_0015 murF; UDP-MurNAc-pentapeptide synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D APJL_0016 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase E K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D APJL_0019 murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:apj01503]
D APJL_0802 sapA; peptide transport periplasmic protein K19226 sapA; cationic peptide transport system substrate-binding protein
D APJL_0801 sapB; peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein
D APJL_0800 sapC; peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein
D APJL_0799 sapD; peptide transport system ATP binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D APJL_1260 sapF; peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D APJL_0622 sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D APJL_0623 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D APJL_1155 amiB; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D APJL_1306 degP; periplasmic serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D APJL_1911 dsbA; probable thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D APJL_1671 thiol-disulfide isomerase and thioredoxin K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D APJL_0579 membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D APJL_0580 acriflavine resistance protein K18138 acrB; multidrug efflux pump
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:apj01000]
C 01001 Protein kinases [BR:apj01001]
D APJL_1757 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D APJL_1267 phoR; phosphate regulon sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D APJL_0622 sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D APJL_1080 ygiY; sensor protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D APJL_0945 arcB; sensor histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D APJL_0489 narQ; nitrate/nitrite sensor protein K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:apj01009]
D APJL_1143 pfkA; phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APJL_1004 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
D APJL_1241 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:apj01002]
D APJL_1545 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D APJL_0889 hopD; leader peptidase HopD K02506 hofD; leader peptidase HopD [EC:3.4.23.43]
D APJL_1353 hyaD; hydrogenase 2 maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D APJL_0585 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D APJL_0376 nlpC; probable lipoprotein NlpC-like protein precursor K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D APJL_0605 hypothetical lipoprotein K13695 nlpC; probable lipoprotein NlpC
D APJL_0450 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D APJL_1664 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D APJL_0122 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D APJL_1358 pepN; aminopeptidase N protein K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D APJL_1052 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D APJL_1960 pepO; metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D APJL_1926 ptrA; protease III K01407 ptrA; protease III [EC:3.4.24.55]
D APJL_1174 putative zinc protease K07263 pqqL; zinc protease [EC:3.4.24.-]
D APJL_1116 pepA; aminopeptidase A/I K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D APJL_0409 pepB; peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D APJL_1980 carboxypeptidase G2 precursor K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D APJL_1917 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D APJL_0262 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D APJL_0881 aminobenzoyl-glutamate utilization protein K12940 abgA; aminobenzoyl-glutamate utilization protein A
D APJL_0484 putative metalloprotease K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D APJL_2080 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D APJL_0091 proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D APJL_0653 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D APJL_0589 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D APJL_1057 htpX; putative protease K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D APJL_0436 ecfE; putative zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D APJL_0748 mepA; penicillin-insensitive murein endopeptidase A K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D APJL_1306 degP; periplasmic serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D APJL_0744 degS; protease DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D APJL_1629 dacA; penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D APJL_0955 dacB; penicillin-binding protein 4, D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D APJL_1292 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D APJL_0394 lon; ATP-dependent protease LA K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D APJL_1933 lonH; lon protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D APJL_1127 lexA; probable LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D APJL_0535 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D APJL_0121 prc; tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D APJL_1279 sppA; protease IV, signal peptide peptidase K04773 sppA; protease IV [EC:3.4.21.-]
D APJL_0009 sohB; serine protease K04774 sohB; serine protease SohB [EC:3.4.21.-]
D APJL_0883 pepE; peptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21]
D APJL_1772 hslV; ATP-dependent protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D APJL_1149 putative protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D APJL_0731 pmbA; antibiotic maturation factor PmbA K03592 pmbA; PmbA protein
D APJL_1567 tldD; TldD protein K03568 tldD; TldD protein
D APJL_1092 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC
D APJL_1093 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:apj01003]
D APJL_0365 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D APJL_0505 Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D APJL_1859 ponB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D APJL_0196 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D APJL_1571 wecG; putative UDP-N-acetyl-D-mannosaminuronic acidtransferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D APJL_1573 wecF; TDP-Fuc4NAc:lipid II Fuc4NAc transferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D APJL_1582 wecA; undecaprenyl-phosphatealpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D APJL_1970 pgaC; biofilm PGA synthesis N-glycosyltransferase PgaC K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:apj01005]
D APJL_0008 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D APJL_0025 lpxC; UDP-3-O-acyl-GlcNAc deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D APJL_0433 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D APJL_1844 lpxH; UDP-2,3 diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D APJL_1290 lpxK; tetraacyldisaccharide 4' kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D APJL_0912 lpxL; lipid A acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D APJL_0173 lpxM; lipid A acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D APJL_1151 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D APJL_0916 kdkA; 3-deoxy-D-mannooctulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D APJL_2091 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D APJL_0085 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D APJL_0051 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D APJL_0408 probable phosphosugar isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D APJL_1427 rfaC; lipopolysaccharide heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D APJL_0443 putative glycosyltransferase K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D APJL_1428 rfaF; ADP-heptose LPS heptosyltransferase K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D APJL_1150 hypothetical protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D APJL_0187 putative glycosyltransferase K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D APJL_0804 lpcA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D APJL_0855 probable phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D APJL_0423 waaE; ADP-heptose synthase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D APJL_1742 gmhD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D APJL_1572 putative polysaccharide biosynthesis protein K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D APJL_1485 wzz; Wzz-like protein K05789 wzzB; chain length determinant protein (polysaccharide antigen chain regulator)
D APJL_1582 wecA; undecaprenyl-phosphatealpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:apj01011]
D APJL_1299 murA; UDP-N-Acetyllglucosamine-1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D APJL_1893 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D APJL_0020 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D APJL_0017 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D APJL_0014 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D APJL_0021 ddlB; D-alanine-D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D APJL_0260 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D APJL_1880 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D APJL_0016 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase E K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D APJL_0019 murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D APJL_1585 mviN; MviN virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D APJL_0196 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D APJL_1859 ponB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D APJL_1632 mrdA; penicillin binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D APJL_0013 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D APJL_1629 dacA; penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D APJL_0955 dacB; penicillin-binding protein 4, D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D APJL_0505 Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D APJL_0122 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D APJL_0748 mepA; penicillin-insensitive murein endopeptidase A K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D APJL_0376 nlpC; probable lipoprotein NlpC-like protein precursor K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D APJL_0484 putative metalloprotease K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D APJL_0677 putative soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D APJL_0822 mltA; lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D APJL_0633 membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D APJL_1777 mltC; membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D APJL_1384 hypothetical protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D APJL_1854 predicted periplasmic solute-binding protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D APJL_1630 possible rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D APJL_1155 amiB; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D APJL_0331 ampD; anhydro-N-acetylmuramyl-tripeptide amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:apj01004]
D APJL_2041 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D APJL_1402 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D APJL_1073 fabB; 3-oxoacyl-(acyl-carrier-protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D APJL_2040 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D APJL_1932 fabA; 3-hydroxydecanoyl-(acyl-carrier protein) dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D APJL_0432 fabZ; (3R)-hydroxymyristoyl-acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D APJL_0756 fabI; enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D APJL_0794 dioxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D APJL_0990 putative acyl CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D APJL_1445 fAA1; long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APJL_0418 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APJL_1126 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D APJL_1403 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D APJL_1359 predicted membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D APJL_1513 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:apj01006]
D APJL_0813 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D APJL_2043 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D APJL_0438 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D APJL_2007 miaA; tRNA delta-2-isopentylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D APJL_1483 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D APJL_0829 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:apj01007]
D APJL_1286 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D APJL_0674 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D APJL_1501 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D APJL_1935 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D APJL_0925 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D APJL_0040 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D APJL_0368 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D APJL_0045 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D APJL_1527 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D APJL_0884 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D APJL_0815 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D APJL_1169 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D APJL_0670 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D APJL_1196 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D APJL_1836 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D APJL_1839 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D APJL_0880 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D APJL_1867 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D APJL_0220 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D APJL_0644 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D APJL_0602 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D APJL_0603 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D APJL_0652 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APJL_1061 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D APJL_0698 hisC1; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APJL_2071 hisC2; histidinol-phosphate aminotransferase/Tyrosine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APJL_0951 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D APJL_0249 argD2; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D APJL_2023 argD1; PLP-dependent aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D APJL_0952 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D APJL_1583 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D APJL_0072 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D APJL_0700 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D APJL_1577 rffA; Lipopolysaccharide biosynthesis protein RffA K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:apj00194]
D APJL_1678 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D APJL_1679 atpD; ATP synthase beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D APJL_1680 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D APJL_1681 atpA; ATP synthase alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D APJL_1682 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D APJL_1683 atpF; ATP synthase B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D APJL_1684 atpE; ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D APJL_1685 atpB; ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D APJL_1686 atpI; ATP synthase protein I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:apj03000]
D APJL_0132 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D APJL_0998 lysR1; transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D APJL_1177 lysR2; transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D APJL_1506 oxyR; hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D APJL_0134 cysB; HTH-type transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D APJL_0695 putative HTH-type transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D APJL_0830 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D APJL_1715 fucR; L-fucose operon activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D APJL_1734 probable DeoR-family transcription repressor K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D APJL_1699 rbsR; ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D APJL_1959 purR3; transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D APJL_2083 scrR; sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D APJL_0826 purR1; purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D APJL_1698 purR2; transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D APJL_0338 fadR; fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D APJL_0564 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D APJL_0578 putative HTH-type transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D APJL_2014 ttk; TetR family transcription regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D APJL_1505 putative HTH-type transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D APJL_1877 asnC; regulatory protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D APJL_0612 lrp; transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D APJL_1245 malT; ATP-dependent transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D APJL_1273 probable heavy metal-dependent transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D APJL_1231 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D APJL_0109 putative HTH-type transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
D APJL_2012 catabolite gene activator (cAMP receptor protein) K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D APJL_0646 hlyX; fnr-like transcriptional regulator protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D APJL_0942 putative HTH-type transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D APJL_1106 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D APJL_0511 predicted transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D APJL_1892 birA; biotin operon represssor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D APJL_0191 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D APJL_0504 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D APJL_0047 nadR; transcription regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D APJL_0141 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D APJL_1964 metJ; transcriptional regulator of met regulon K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D APJL_0107 putA; 1-pyrroline-5-carboxylate dehydrogenase/proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D APJL_0240 bolA; putative transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D APJL_1308 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D APJL_0610 mlc; transcriptional regulator/sugar kinase K15545 mlc; transcriptional regulator of PTS gene
D APJL_1661 mtl; mannitol operon repressor K02562 mtlR; mannitol operon repressor
D APJL_0528 putative transcription activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D APJL_0803 tyrR; transcriptional regulatory protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D APJL_0422 pyrR; PyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D APJL_0237 putative transcriptional regulator K07735 algH; putative transcriptional regulator
D APJL_0176 dksA; dosage-dependent DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D APJL_0711 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D APJL_0010 mraZ; MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:apj03021]
D APJL_1820 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D APJL_1762 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D APJL_1763 rpoC; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D APJL_1862 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D APJL_1500 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D APJL_0415 rpoE; RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D APJL_1869 probable RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D APJL_1872 rpoH; RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor
D APJL_0329 hepA; RNA polymerase associated protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D APJL_0629 nusA; transcription termination-antitermination factor, N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D APJL_0202 nusB; transcription termination factor K03625 nusB; transcription antitermination protein NusB
D APJL_1750 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D APJL_0648 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D APJL_0647 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B
D APJL_0416 rseA; possible sigma-E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA
D APJL_0417 rseC; possible sigma-E factor regulatory protein K03803 rseC; sigma-E factor negative regulatory protein RseC
D APJL_0176 dksA; dosage-dependent DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D APJL_0954 greA2; transcription elongation factor K03624 greA; transcription elongation factor GreA
D APJL_0407 greA1; transcription elongation factor K04760 greB; transcription elongation factor GreB
D APJL_0253 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:apj03019]
D APJL_1468 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D APJL_0816 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D APJL_0536 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D APJL_1503 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D APJL_1153 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D APJL_0568 deaD; cold-shock DEAD box protein-A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D APJL_1135 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D APJL_1132 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D APJL_0570 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D APJL_0253 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D APJL_1143 pfkA; phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APJL_1953 dnaK; chaperone protein K04043 dnaK; molecular chaperone DnaK
D APJL_1030 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D APJL_2008 hfq; host factor-I protein Hfq K03666 hfq; host factor-I protein
D APJL_0177 pcnB; polyA polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D APJL_1940 nudH; (Di)nucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D APJL_0643 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D APJL_1946 menG; regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D APJL_0093 hypothetical protein K09893 rraB; regulator of ribonuclease activity B
D APJL_0350 hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D APJL_0383 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:apj03011]
D APJL_0742 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D APJL_0559 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D APJL_1801 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D APJL_1819 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D APJL_1812 rpS5; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D APJL_1192 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D APJL_1425 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D APJL_1809 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D APJL_0595 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D APJL_1794 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D APJL_1818 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D APJL_1426 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D APJL_1817 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D APJL_1808 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D APJL_1023 rpsO; ribosomal protein S15P/S13E K02956 RP-S15; small subunit ribosomal protein S15
D APJL_1822 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D APJL_1804 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D APJL_1190 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D APJL_1799 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D APJL_1586 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D APJL_1498 rpsU; 30S ribosomal protein s21 K02970 RP-S21; small subunit ribosomal protein S21
D APJL_1752 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D APJL_1798 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D APJL_1795 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D APJL_1796 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D APJL_1807 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D APJL_1810 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D APJL_1189 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D APJL_1751 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D APJL_1755 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D APJL_0594 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D APJL_1805 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D APJL_1814 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D APJL_1802 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D APJL_1821 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D APJL_1811 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D APJL_1825 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D APJL_0226 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D APJL_2047 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D APJL_1800 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D APJL_1797 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D APJL_1806 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D APJL_2048 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D APJL_2018 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D APJL_1803 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D APJL_1813 ribosomal protein L30/L7E K02907 RP-L30; large subunit ribosomal protein L30
D APJL_1002 rpL31_2; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D APJL_1857 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D APJL_1404 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D APJL_2019 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D APJL_1984 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D APJL_0225 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D APJL_1816 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D APJL_1858 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D APJL_0517 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D APJL_R011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R056 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R043 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R064 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R080 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R076 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R059 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R068 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R047 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R079 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R065 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R057 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R044 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:apj03009]
D APJL_0536 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D APJL_1153 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D APJL_0537 era; GTP-binding protein K03595 era; GTPase
D APJL_0041 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D APJL_0176 dksA; dosage-dependent DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D APJL_0629 nusA; transcription termination-antitermination factor, N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D APJL_0202 nusB; transcription termination factor K03625 nusB; transcription antitermination protein NusB
D APJL_1750 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D APJL_0371 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D APJL_0420 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D APJL_1588 sun; SUN protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D APJL_2055 rsmC; putative ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D APJL_1365 putative methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D APJL_0238 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D APJL_1687 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D APJL_0011 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D APJL_1379 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D APJL_1915 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D APJL_0043 putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D APJL_0588 ftsJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D APJL_1633 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D APJL_0332 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D APJL_0060 putative RNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D APJL_0683 mtfA; putative RNA 2'-O-ribose methyltransferase MtfA K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D APJL_1285 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D APJL_0327 rumA; 23S rRNA (Uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D APJL_1131 trmA1; SAM-dependent methyltransferase related to tRNA(uracil-5-)-methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D APJL_0330 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D APJL_0234 rluA; RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D APJL_1179 probable pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D APJL_1921 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D APJL_1141 rluD; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D APJL_0088 rluB; probable pseudouridylate synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D APJL_0206 conserved putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D APJL_2057 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D APJL_0513 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D APJL_1823 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D APJL_1669 hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D APJL_0817 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D APJL_1564 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D APJL_0953 putative adenine-specific methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D APJL_1826 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D APJL_1468 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D APJL_0816 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D APJL_0236 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D APJL_0568 deaD; cold-shock DEAD box protein-A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D APJL_2058 srmB; ATP-dependent RNA helicase protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D APJL_0131 putative GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D APJL_0424 engA; conserved putative GTP-binding protein K03977 engA; GTPase
D APJL_2009 hflX; GTP-binding protein HflX K03665 hflX; GTPase
D APJL_1159 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D APJL_1861 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D APJL_0631 rbfA; ribosome binding factor A K02834 rbfA; ribosome-binding factor A
D APJL_0628 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D APJL_1634 plant Iojap-like protein K09710 ybeB; ribosome-associated protein
D APJL_0970 hypothetical protein K07042 ybeY; probable rRNA maturation factor
D APJL_0692 hypothetical protein K07042 ybeY; probable rRNA maturation factor
D APJL_0442 putative RNA-binding protein K07574 yhbY; RNA-binding protein
D APJL_0732 hypothetical protein K09889 yjgA; ribosome-associated protein
D APJL_0913 putative sigma 54 modulation protein K05809 raiA; ribosome-associated inhibitor A
D APJL_0035 engD; GTP-dependent nucleic acid-binding protein K06942 ychF; ribosome-binding ATPase
D APJL_1405 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:apj03016]
D APJL_1280 probable ribonuclease precursor K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D APJL_0927 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D APJL_1286 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D APJL_1867 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D APJL_0045 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D APJL_0884 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D APJL_0368 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D APJL_0674 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D APJL_0040 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D APJL_0815 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D APJL_1169 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D APJL_0644 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D APJL_0670 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D APJL_0220 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D APJL_0880 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D APJL_0925 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D APJL_1527 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D APJL_1196 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D APJL_0602 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D APJL_0603 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D APJL_1501 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D APJL_1935 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D APJL_1996 dtd; D-tyrosyl-tRNA (Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D APJL_0127 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D APJL_1401 tRNA (guanine-N7-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D APJL_1481 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D APJL_0914 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D APJL_0632 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D APJL_1973 tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D APJL_0941 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D APJL_1159 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D APJL_2007 miaA; tRNA delta-2-isopentylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D APJL_1515 trmE; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D APJL_1688 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D APJL_0343 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D APJL_1325 cysQ; 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D APJL_1985 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D APJL_0183 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D APJL_0055 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D APJL_0759 rnb; ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D APJL_0611 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D APJL_1295 ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D APJL_1836 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D APJL_1839 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D APJL_1234 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D APJL_0279 hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D APJL_0567 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D APJL_0147 tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D APJL_0190 putative dehydrogenase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D APJL_0320 putative nitrogen regulator protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D APJL_1339 bifunctional enzyme involved in thiolation andmethylation of tRNA K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D APJL_0755 SAM-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D APJL_0820 hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D APJL_2028 trmA2; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D APJL_1824 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D APJL_0206 conserved putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D APJL_0851 probable tRNA/rRNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D APJL_0061 probable tRNA/rRNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D APJL_0873 probable pseudouridine synthase Rlu family protein K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D APJL_0330 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D APJL_0234 rluA; RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D APJL_0159 trmU; tRNA(5-methylaminomethyl-2-thiouridylate)methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D APJL_0995 hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D APJL_0092 sirA; SirA protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D APJL_0721 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D APJL_1677 Uncharacterized conserved protein involved inoxidation of intracellular sulfur K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D APJL_1676 putative uncharacterized protein involved inoxidation of intracellular sulfur K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D APJL_1675 putative uncharacterized protein involved inoxidation of intracellular sulfur K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D APJL_0283 putative sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D APJL_0939 iscA; iron-binding protein K13628 iscA; iron-sulfur cluster assembly protein
D APJL_0057 hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
D APJL_0869 hypothetical protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D APJL_0767 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D APJL_1111 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D APJL_1112 conserved possible 6-pyruvoyltetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D APJL_1113 organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D APJL_0854 possible GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D APJL_2042 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D APJL_0723 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D APJL_1090 thiI; thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D APJL_1568 mesJ; probable cell-cycle protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D APJL_0969 hypothetical protein K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D APJL_0693 possible acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D APJL_0616 probable M22 peptidase-like protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D APJL_1139 gcp; putative sialylglycoprotease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D APJL_1154 ATP-binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D APJL_0306 hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D APJL_1503 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D APJL_0570 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D APJL_1767 predicted nucleic acid-binding protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D APJL_0659 hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:apj03012]
D APJL_0737 conserved possible translation initiation factor K03113 EIF1; translation initiation factor 1
D APJL_0630 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D APJL_0224 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D APJL_0322 probable ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D APJL_0560 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D APJL_1422 tufB1; elongation factor Tu K02358 tuf; elongation factor Tu
D APJL_1538 tufB2; elongation factor Tu K02358 tuf; elongation factor Tu
D APJL_1589 selB; selenocysteine-specific elongation factor K03833 selB; selenocysteine-specific elongation factor
D APJL_2095 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D APJL_0563 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D APJL_2093 hemK; protein-glutamine N-methyl transferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D APJL_0034 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D APJL_1239 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D APJL_0673 efp; elongation factor P K02356 efp; elongation factor P
D APJL_1557 genX; lysine--tRNA ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D APJL_0671 hypothetical protein K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D APJL_1378 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D APJL_0341 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D APJL_0031 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D APJL_0763 hypothetical protein K09890 arfA; alternative ribosome-rescue factor
C 03110 Chaperones and folding catalysts [BR:apj03110]
D APJL_1103 clpB; ATP-dependant Clp protease chain B K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D APJL_1291 clpX; ATP-dependent Clp protease, ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D APJL_1771 hslU; ATP-dependent protease, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D APJL_1004 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
D APJL_1953 dnaK; chaperone protein K04043 dnaK; molecular chaperone DnaK
D APJL_0935 hscA; chaperone protein K04044 hscA; molecular chaperone HscA
D APJL_1030 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D APJL_1952 dnaJ; chaperone protein K03686 dnaJ; molecular chaperone DnaJ
D APJL_0319 djlA; DnaJ-like protein K05801 djlA; DnaJ like chaperone protein
D APJL_0938 hscB; chaperone protein K04082 hscB; molecular chaperone HscB
D APJL_1328 hslO; chaperonin heat shock protein 33 K04083 hslO; molecular chaperone Hsp33
D APJL_0385 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D APJL_1327 hslR; heat shock protein 15-like protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D APJL_1031 groES; 10 kDa chaperonin K04078 groES; chaperonin GroES
D APJL_1306 degP; periplasmic serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D APJL_0589 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D APJL_1685 atpB; ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D APJL_1535 secB; protein export protein K03071 secB; preprotein translocase subunit SecB
D APJL_1356 hybF; probable hydrogenase nickel incorporation protein hybF K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D APJL_1341 hypB; Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase K04652 hypB; hydrogenase nickel incorporation protein HypB
D APJL_1833 torD; trimethylamine-n-oxide oxidoreductase K03533 torD; TorA specific chaperone
D APJL_1708 TorD protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D APJL_1110 dspB; N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D APJL_0926 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D APJL_1021 ppiD; peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D APJL_1673 fkpA1; FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D APJL_1737 fkpA2; FKBP-type peptidyl-prolyl cis-trans isomerase 1 K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D APJL_1478 slyD; FkbP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D APJL_0421 surA; survival SurA-like protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D APJL_1094 trxA; thioredoxin K03671 TXN; thioredoxin
D APJL_0080 possible thioredoxin-like protein K05838 ybbN; putative thioredoxin
D APJL_0054 grxA; glutaredoxin 1 K03674 grxA; glutaredoxin 1
D APJL_0073 conserved glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D APJL_1911 dsbA; probable thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D APJL_1671 thiol-disulfide isomerase and thioredoxin K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D APJL_0336 dsbB; disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D APJL_0485 dsbC; thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D APJL_1377 dsbD; thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D APJL_1540 dsbE1; probable thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D APJL_1069 dsbE2; possible thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:apj04131]
D APJL_0367 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D APJL_0460 gapA; glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D APJL_0840 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D APJL_0188 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D APJL_1004 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:apj04121]
C 03051 Proteasome [BR:apj03051]
D APJL_1004 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:apj03032]
D APJL_0448 rnh; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D APJL_0115 hupA; DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha
D APJL_0604 ihfA; integration host factor, alpha chain K04764 ihfA; integration host factor subunit alpha
D APJL_0741 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D APJL_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D APJL_0713 dnaB2; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D APJL_1499 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D APJL_0787 ssb; single stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D APJL_1120 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D APJL_0002 dnaN; DNA polymerase III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D APJL_1531 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D APJL_0886 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D APJL_1852 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D APJL_1294 dnaQ; DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D APJL_0273 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D APJL_2056 holD; DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D APJL_0130 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D APJL_0500 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APJL_1315 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D APJL_0193 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APJL_0753 seqA; DNA replication inhibitor protein K03645 seqA; negative modulator of initiation of replication
D APJL_1391 yfgE; ATPase involved in DNA replication initiation K10763 hda; DnaA-homolog protein
D APJL_0297 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D APJL_0828 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D APJL_0571 parC; topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D APJL_1266 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D APJL_0694 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D APJL_0746 topB2; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:apj03036]
D APJL_0536 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D APJL_0475 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D APJL_0115 hupA; DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha
D APJL_0604 ihfA; integration host factor, alpha chain K04764 ihfA; integration host factor subunit alpha
D APJL_0741 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D APJL_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D APJL_1382 phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein
D APJL_1519 ftpA; fine tangled pili major subunit K04047 dps; starvation-inducible DNA-binding protein
D APJL_0191 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D APJL_2008 hfq; host factor-I protein Hfq K03666 hfq; host factor-I protein
D APJL_0612 lrp; transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D APJL_0454 ndpA; nucleoid-associated protein K06899 ndpA; nucleoid-associated protein
D APJL_0853 hypothetical protein K06899 ndpA; nucleoid-associated protein
D APJL_0574 mukB; cell division protein K03632 mukB; chromosome partition protein MukB
D APJL_0573 mukE; MukE protein K03804 mukE; chromosome partition protein MukE
D APJL_0572 mukF; MukF protein K03633 mukF; chromosome partition protein MukF
D APJL_0023 ftsA; cell division protein K03590 ftsA; cell division protein FtsA
D APJL_0806 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB
D APJL_1363 fstE; cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D APJL_0013 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D APJL_0613 ftsK; cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D APJL_0012 ftsL; cell division protein K03586 ftsL; cell division protein FtsL
D APJL_1914 possible cell division protein K03591 ftsN; cell division protein FtsN
D APJL_0022 ftsQ; cell division protein K03589 ftsQ; cell division protein FtsQ
D APJL_0018 ftsW; cell division protein K03588 ftsW; cell division protein FtsW
D APJL_1362 fstX; cell division protein K09811 ftsX; cell division transport system permease protein
D APJL_0024 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ
D APJL_1316 zipA; cell division protein K03528 zipA; cell division protein ZipA
D APJL_0111 hypothetical protein K09888 zapA; cell division protein ZapA
D APJL_0618 hypothetical protein K09892 zapB; cell division protein ZapB
D APJL_1155 amiB; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D APJL_0579 membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D APJL_2014 ttk; TetR family transcription regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D APJL_0753 seqA; DNA replication inhibitor protein K03645 seqA; negative modulator of initiation of replication
D APJL_0461 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D APJL_0462 mreC; rod shape-determining protein K03570 mreC; rod shape-determining protein MreC
D APJL_0463 mreD; rod shape-determining protein K03571 mreD; rod shape-determining protein MreD
D APJL_1631 mrdB; rod-shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D APJL_0571 parC; topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D APJL_1266 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D APJL_1688 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D APJL_1687 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D APJL_1841 xerC; integrase/recombinase XerC K03733 xerC; integrase/recombinase XerC
D APJL_1570 xerD; integrase/recombinase XerD K04763 xerD; integrase/recombinase XerD
D APJL_1018 mrp; MRP-like protein, ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D APJL_0871 filamentation induced by cAMP protein Fic-like protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D APJL_0094 engB; GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:apj03400]
D APJL_0944 ogt; methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D APJL_0380 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D APJL_1775 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D APJL_0898 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D APJL_0246 mutT1; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D APJL_2015 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D APJL_1979 tagI; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D APJL_2038 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D APJL_0997 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D APJL_0375 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D APJL_0486 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D APJL_1315 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D APJL_0500 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APJL_0786 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D APJL_0662 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D APJL_0287 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C
D APJL_1340 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D APJL_1762 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D APJL_1763 rpoC; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D APJL_1820 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D APJL_1862 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D APJL_1357 mfd; transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D APJL_1635 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D APJL_2005 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D APJL_1128 mutH; DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D APJL_0668 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D APJL_0812 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D APJL_1120 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D APJL_0002 dnaN; DNA polymerase III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D APJL_1531 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D APJL_0886 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D APJL_1852 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D APJL_1294 dnaQ; DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D APJL_0273 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D APJL_2056 holD; DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D APJL_0787 ssb; single stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D APJL_0193 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APJL_0388 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D APJL_1927 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D APJL_0261 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D APJL_1163 recA; RecA protein K03553 recA; recombination protein RecA
D APJL_0295 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D APJL_1173 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D APJL_1050 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D APJL_1191 priB; primosomal replication protein K02686 priB; primosomal replication protein N
D APJL_0893 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
D APJL_0003 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
D APJL_1863 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D APJL_0538 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D APJL_0074 recR; recombination DNA repair protein K06187 recR; recombination protein RecR
D APJL_0026 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D APJL_0162 rdgC; recombination associated protein K03554 rdgC; recombination associated protein RdgC
D APJL_0215 cas1; CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1
D APJL_0551 predicted ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D APJL_0297 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D APJL_0828 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D APJL_0694 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D APJL_0115 hupA; DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha
D APJL_0191 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D APJL_0604 ihfA; integration host factor, alpha chain K04764 ihfA; integration host factor subunit alpha
D APJL_0741 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D APJL_1135 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D APJL_0475 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D APJL_1058 dinP; nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D APJL_1127 lexA; probable LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D APJL_1162 recX; possible regulatory protein RecX-like protein K03565 recX; regulatory protein
D APJL_0289 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D APJL_0784 probable ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D APJL_1009 nrdA; ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APJL_0149 nrdA_1; ribonucleoside-diphosphate reductase alpha subunit 1 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APJL_0148 nrdB_1; ribonucleoside-diphosphate reductase beta subunit 1 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D APJL_1010 nrdB; ribonucleoside-diphosphate reductase, beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:apj03029]
D APJL_0630 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D APJL_0224 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D APJL_0560 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D APJL_1422 tufB1; elongation factor Tu K02358 tuf; elongation factor Tu
D APJL_1538 tufB2; elongation factor Tu K02358 tuf; elongation factor Tu
D APJL_0537 era; GTP-binding protein K03595 era; GTPase
D APJL_1501 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D APJL_0884 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D APJL_1169 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D APJL_0040 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D APJL_0787 ssb; single stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D APJL_0435 ompD; outer membrane protein D-15 K07277 SAM50; outer membrane protein insertion porin family
D APJL_1953 dnaK; chaperone protein K04043 dnaK; molecular chaperone DnaK
D APJL_0385 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D APJL_1030 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D APJL_1031 groES; 10 kDa chaperonin K04078 groES; chaperonin GroES
D APJL_1952 dnaJ; chaperone protein K03686 dnaJ; molecular chaperone DnaJ
D APJL_0941 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D APJL_0938 hscB; chaperone protein K04082 hscB; molecular chaperone HscB
D APJL_0073 conserved glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D APJL_1018 mrp; MRP-like protein, ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D APJL_1456 yidC; 60 kD inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D APJL_1004 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:apj02000]
D APJL_0781 msbA; ABC transporter ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D APJL_1345 apxIIIB; Toxin RTX-III translocation ATP-binding protein (RTX-III toxin determinant B) K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D APJL_1228 ABC transporter, putative ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D APJL_0833 cydC; ABC transporter, ATP-binding subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D APJL_0834 cydD; ABC transporter, ATP-binding subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D APJL_1849 ABC transporter, ATP-binding subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D APJL_0621 putative ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D APJL_0305 uup; ABC transporter ATP-binding protein uup-1 K15738 uup; ABC transport system ATP-binding/permease protein
D APJL_1887 sbp; sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D APJL_1888 cysU; sulfate ABC transporter permease protein K02046 cysU; sulfate/thiosulfate transport system permease protein
D APJL_1889 cysW; sulfate ABC transporter permease protein K02047 cysW; sulfate/thiosulfate transport system permease protein
D APJL_1890 cysA; ABC-type sulfate/molybdate transport systems, ATPase component K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D APJL_0270 modA; molybdate-binding periplasmic protein, ABC transporter K02020 modA; molybdate transport system substrate-binding protein
D APJL_0269 modB; molybdenum ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D APJL_0268 modC; molybdenum ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D APJL_1619 modF; molybdate transport system ATP-binding protein K05776 modF; molybdate transport system ATP-binding protein
D APJL_1416 afuA1; AfuA protein K02012 afuA; iron(III) transport system substrate-binding protein
D APJL_0552 afuA2; iron(III) transport system substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D APJL_1417 afuB1; ABC-type thiamine transport system, permease component K02011 afuB; iron(III) transport system permease protein
D APJL_0553 afuB2; iron(III) transport system permease protein K02011 afuB; iron(III) transport system permease protein
D APJL_1418 afuC; ferric transport protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D APJL_0175 tbpA; thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein
D APJL_1335 thiP1; probable thiamin ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein
D APJL_1334 thiQ; conserved probable thiamin ABC transporter,ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D APJL_0386 potD2; spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D APJL_0292 potC; spermidine/putrescine transport system permease protein K11070 potC; spermidine/putrescine transport system permease protein
D APJL_0291 potB; spermidine/putrescine transport system permease protein K11071 potB; spermidine/putrescine transport system permease protein
D APJL_0290 potA; spermidine/putrescine transport ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D APJL_0529 sulfonate/nitrate/taurine transport system substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D APJL_0522 nasD; ABC transporter, ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D APJL_1249 malE; maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D APJL_1250 malF; ABC-type sugar transport systems, permease component K10109 malF; maltose/maltodextrin transport system permease protein
D APJL_1251 malG; ABC maltose transporter, permease subunit K10110 malG; maltose/maltodextrin transport system permease protein
D APJL_1248 malK; ABC-type sugar/spermidine/putrescine/iron/thiamine transport system, ATPase component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D APJL_1452 rbsB1; periplasmic sugar-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APJL_0477 mglB; D-galactose transport system substrate-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APJL_1450 mglC; galactoside ABC transporter, permease protein K10541 mglC; methyl-galactoside transport system permease protein
D APJL_1451 mglA; ABC-type sugar (aldose) transport system, ATPase component K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D APJL_1956 xylF; D-xylose ABC transporter, periplasmic sugar-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D APJL_1958 xylH; D-xylose transport system permease protein K10544 xylH; D-xylose transport system permease protein
D APJL_1957 xylG; D-xylose ABC transporter, ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D APJL_1703 rbsB2; ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D APJL_1702 rbsC; ribose transport system permease protein K10440 rbsC; ribose transport system permease protein
D APJL_1701 rbsA; ribose transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D APJL_1303 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D APJL_1304 probable permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D APJL_1305 ABC transporter ATP binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D APJL_1302 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D APJL_1301 putative anti-sigma factor B antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D APJL_1272 pstS; phosphate-binding periplasmic protein precursor K02040 pstS; phosphate transport system substrate-binding protein
D APJL_1271 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D APJL_1270 pstA; phosphate transport system permease K02038 pstA; phosphate transport system permease protein
D APJL_1269 pstB; phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D APJL_1371 artI; ABC-type amino acid transport system,periplasmic component K09997 artI; arginine transport system substrate-binding protein
D APJL_1369 artM1; arginine transport system permease protein K09998 artM; arginine transport system permease protein
D APJL_1370 artQ; arginine transport system permease protein K09999 artQ; arginine transport system permease protein
D APJL_1372 artP; arginine ABC transporter, ATP-binding protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D APJL_1690 amino acid ABC transporter, substrate-binding K02424 tcyA; L-cystine transport system substrate-binding protein
D APJL_1637 artM2; ABC-type amino acid transport system, permease component K10009 tcyB; L-cystine transport system permease protein
D APJL_1636 glnQ; ABC-type polar amino acid transport system, ATPase component K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D APJL_0921 plpB; outer membrane lipoprotein 2 precursor K02073 metQ; D-methionine transport system substrate-binding protein
D APJL_0922 hlpA; outer membrane lipoprotein precursor K02073 metQ; D-methionine transport system substrate-binding protein
D APJL_0923 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D APJL_0924 metN; D-methionine transport ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D APJL_1726 putative ABC transporter, periplasmic binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D APJL_1723 putative ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D APJL_1724 putative ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D APJL_1725 putative ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D APJL_0064 dppA2; dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_2060 hbpA2; heme-binding protein A K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_0866 hbpA1; heme-binding protein A precursor K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_0063 dppA1; dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APJL_0065 dppB; dipeptide transport system permease protein K12369 dppB; dipeptide transport system permease protein
D APJL_0066 dppC; dipeptide transport system permease protein K12370 dppC; dipeptide transport system permease protein
D APJL_0067 dppD; dipeptide transport ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein
D APJL_0068 dppF; dipeptide transport ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D APJL_0802 sapA; peptide transport periplasmic protein K19226 sapA; cationic peptide transport system substrate-binding protein
D APJL_0801 sapB; peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein
D APJL_0800 sapC; peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein
D APJL_0799 sapD; peptide transport system ATP binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D APJL_1260 sapF; peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D APJL_0030 ABC-type dipeptide transport system, periplasmic protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APJL_1019 putative oligopeptide transporter,periplasmic-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APJL_0859 putative ABC transporter periplasmic binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APJL_0860 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D APJL_0029 gsiC; glutathione permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D APJL_0028 nickel transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D APJL_0861 ABC transporter, ATP-binding protein and permease protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D APJL_0027 peptide transport system ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D APJL_0862 ABC transporter, ATP-binding subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D APJL_2064 fhuD; ferrichrome-binding periplasmic protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D APJL_2065 fhuB; ferrichrome uptake protein K23228 fhuB; ferric hydroxamate transport system permease protein
D APJL_2063 fhuC; ABC-type cobalamin/Fe3+-siderophores transportsystems, ATPase components K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D APJL_0714 ABC-type enterochelin transport system,periplasmic component K25282 yclQ; iron-siderophore transport system substrate-binding protein
D APJL_0716 iron(III) transport system permease protein K25283 yclO; iron-siderophore transport system permease protein
D APJL_0715 iron(III) transport system permease protein K25284 yclN; iron-siderophore transport system permease protein
D APJL_0717 iron(III) transport system ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D APJL_1831 ABC-type Fe3+-hydroxamate transport system,periplasmic component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D APJL_1828 Fe(III) dicitrate ABC transporter, permease K02015 ABC.FEV.P; iron complex transport system permease protein
D APJL_1829 hmuV; Hemin import ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D APJL_1472 znuA; periplasmic zinc transporter K09815 znuA; zinc transport system substrate-binding protein
D APJL_0465 znuB; high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein
D APJL_0483 znuC; zinc ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D APJL_0129 yfeC; iron (chelated) transport system membrane protein K11605 sitC; manganese/iron transport system permease protein
D APJL_0128 yfeD; iron (chelated) transport system membrane protein K11606 sitD; manganese/iron transport system permease protein
D APJL_0280 yfeB; iron (chelated) transporter, ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein
D APJL_1654 cbiQ; ABC-type cobalt transport system, permease component CbiQ and related transporter K02008 cbiQ; cobalt/nickel transport system permease protein
D APJL_1655 cbiM; ABC-type Co2+ transport system, permease component K02007 cbiM; cobalt/nickel transport system permease protein
D APJL_1653 cbiO; predicted ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D APJL_1657 hypothetical protein K10094 cbiK; nickel transport protein
D APJL_1656 cbiL; putative cytoplasmic membrane protein CbiL K16915 cbiL; nickel transport protein
D APJL_1617 cpxB; capsule polysaccharide export transport system permease protein K09688 kpsM; capsular polysaccharide transport system permease protein
D APJL_1616 cpxC; capsule polysaccharide export transport system permease protein K10107 kpsE; capsular polysaccharide transport system permease protein
D APJL_1618 cpxA; capsule polysaccharide export transport system ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D APJL_1118 predicted permease K07091 lptF; lipopolysaccharide export system permease protein
D APJL_1119 predicted permease K11720 lptG; lipopolysaccharide export system permease protein
D APJL_0352 probable ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D APJL_2087 lolE; lipoprotein releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D APJL_2089 lolC; lipoprotein releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D APJL_2088 lolD; lipoprotein releasing system ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D APJL_1387 ccmD; heme exporter protein D K02196 ccmD; heme exporter protein D
D APJL_1388 ccmC; cytochrome c-type biogenesis protein K02195 ccmC; heme exporter protein C
D APJL_1389 ccmB; cytochrome c-type biogenesis protein K02194 ccmB; heme exporter protein B
D APJL_1390 ccmA2; cytochrome c-type biogenesis ATP-binding protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D APJL_1362 fstX; cell division protein K09811 ftsX; cell division transport system permease protein
D APJL_1363 fstE; cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D APJL_0271 ABC-2 type transport system permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D APJL_0847 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D APJL_0272 ABC-2 type transport system ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D APJL_1265 Di- and tricarboxylate transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D APJL_1263 hypothetical protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D APJL_0387 norM; multidrug resistance protein K26939 norM; MATE family, multidrug efflux pump
D APJL_1720 fucP; L-fucose permease K02429 fucP; MFS transporter, FHS family, L-fucose permease
D APJL_1322 putative transport protein K26744 vanK; MFS transporter, AAHS family, vanillate permease
D APJL_0160 hcaT; probable 3-phenylpropionic acid transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D APJL_1873 sugar phosphate permease K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D APJL_0395 glpT; glycerol 3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D APJL_1313 ampG; permease and possible signal transducer K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D APJL_0372 proP; permease of the major facilitator superfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D APJL_0575 putative sugar efflux transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D APJL_1337 ptsI; phosphoenolpyruvate phosphotransferase system enzyme I K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D APJL_1336 ptsH; PTS system phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D APJL_0361 ptsN2; phosphotransferase systemmannitol/fructose-specific IIA domain K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D APJL_1338 crr; glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D APJL_1333 ptsB; phosphotransferase system enzyme II,sucrose-specific, factor IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D APJL_0359 fruA; phosphotransferase system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D APJL_1663 mtlA; phosphotransferase system, mannitol-specific IIBC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D APJL_1410 phosphotransferase system enzyme II,mannose-specific, factor IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APJL_1695 phosphotransferase system,mannose/fructose/N-acetylgalactosamine-specific component IIB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APJL_1694 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D APJL_1411 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D APJL_1693 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D APJL_1412 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D APJL_1731 PTS system Enzyme II-A permease component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D APJL_1748 sgaB; phosphotransferase system, galactitol-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APJL_1732 sgaT; putative PTS system Enzyme II sga subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APJL_1747 ulaA; ascorbate-specific permease IIC component UlaA K03475 ulaA; ascorbate PTS system EIIC component
D APJL_0351 ptsN1; PTS system, nitrogen regulatory IIA-like protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D APJL_0081 dhaM; PTS-dependent dihydroxyacetone kinase,phosphotransferase subunit K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D APJL_1479 aqpZ; aquaporin Z, transmembrane water channel K06188 aqpZ; aquaporin Z
D APJL_0392 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D APJL_1550 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D APJL_1648 ureX; UreX K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D APJL_0648 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D APJL_0284 probable transport protein K19416 yccA; modulator of FtsH protease
D APJL_1055 focA; conserved probable formate transporter protein K06212 focA; formate transporter
D APJL_1947 yrhG; putative formate-nitrite transporter K21993 fdhC; formate transporter
D APJL_1625 mscL; large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D APJL_0750 kefA1; potassium efflux system protein K05802 mscK; potassium-dependent mechanosensitive channel
D APJL_0751 kefA2; potassium efflux system protein K05802 mscK; potassium-dependent mechanosensitive channel
D APJL_1923 small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D APJL_1652 utp; urea transport protein K08717 utp; urea transporter
D APJL_0078 exbB2; biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D APJL_1600 exbB1; biopolymer transport ExbB protein K03561 exbB; biopolymer transport protein ExbB
D APJL_0077 exbD2; biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD
D APJL_1599 exbD1; biopolymer transport ExbD protein K03559 exbD; biopolymer transport protein ExbD
D APJL_0313 tolQ; colicin transport protein K03562 tolQ; biopolymer transport protein TolQ
D APJL_0314 tolR; biopolymer transport protein K03560 tolR; biopolymer transport protein TolR
D APJL_2029 corA; magnesium and cobalt transport protein K03284 corA; magnesium transporter
D APJL_1560 crcB; CrcB protein K06199 crcB; fluoride exporter
D APJL_1900 putative mercuric transport protein K08363 merT; mercuric ion transport protein
D APJL_1901 Copper chaperone K08364 merP; periplasmic mercuric ion binding protein
D APJL_0233 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D APJL_1407 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D APJL_1247 maltoporin K02024 lamB; maltoporin
D APJL_1453 momP1; major outer membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D APJL_1894 momP2; major outer membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D APJL_0943 ompP1; outer membrane protein P1 K06076 fadL; long-chain fatty acid transport protein
D APJL_1312 iron-regulated outer membrane protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D APJL_1597 tbpA1; transferrin-binding protein 1 precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D APJL_1065 hgbA; probable hemoglobin and hemoglobin-haptoglobin-binding protein 4 precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D APJL_0286 frpB; iron-regulated outer membrane protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D APJL_0930 irp; iron-regulated outer membrane protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D APJL_2066 fhuA; outer membrane ferric hydroxamate receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D APJL_1615 cpxD; HexD, capsule biosynthetic locus protein K01991 wza; polysaccharide biosynthesis/export protein
D APJL_0435 ompD; outer membrane protein D-15 K07277 SAM50; outer membrane protein insertion porin family
D APJL_1140 conserved putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D APJL_0453 smpA; small protein A K06186 bamE; outer membrane protein assembly factor BamE
D APJL_0837 putative outer membrane protein K07278 tamA; translocation and assembly module TamA
D APJL_0836 hypothetical protein K09800 tamB; translocation and assembly module TamB
D APJL_0353 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA
D APJL_0354 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D APJL_0981 imp; organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D APJL_0885 rlpB; possible rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D APJL_0967 apxIIA; hemolysin A K11005 hlyA; hemolysin A
D APJL_1346 apxIIIA; RTX-III toxin determinant A from serotype 8 K11005 hlyA; hemolysin A
D APJL_0390 corC; magnesium and cobalt efflux protein K06189 corC; hemolysin (HlyC) family protein
D APJL_0760 lrgA1; putative effector of murein hydrolase LrgA K06518 cidA; holin-like protein
D APJL_0783 lrgA2; putative effector of murein hydrolase LrgA K06518 cidA; holin-like protein
D APJL_1098 arcD1; putative arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D APJL_1099 arcD2; putative arginine/ornithine antiporter protein K03758 arcD; arginine:ornithine antiporter / lysine permease
D APJL_0598 fieF; cation-efflux pump FieF K13283 fieF; ferrous-iron efflux pump FieF
D APJL_0096 gufA; GufA-like protein K07238 TC.ZIP; zinc transporter, ZIP family
D APJL_0580 acriflavine resistance protein K18138 acrB; multidrug efflux pump
D APJL_1640 possible drug resistance protein K03297 emrE; small multidrug resistance pump
D APJL_1992 integral membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D APJL_1062 predicted permease K05786 rarD; chloramphenicol-sensitive protein RarD
D APJL_1063 rarD; predicted permease K05786 rarD; chloramphenicol-sensitive protein RarD
D APJL_0937 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D APJL_0996 predicted permease K07084 yuiF; putative amino acid transporter
D APJL_1696 gntP; gluconate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D APJL_0142 hypothetical protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D APJL_1329 dcuB2; anaerobic C4-dicarboxylate membrane transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D APJL_1559 dcuB1; anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D APJL_0474 lctP; L-lactate permease K03303 lutP; lactate permease
D APJL_1222 predicted choline-glycine betaine transporter K02168 betT; choline/glycine/proline betaine transport protein
D APJL_1225 tehA; tellurite resistance protein and related permease K03304 tehA; tellurite resistance protein
D APJL_0507 putative inner membrane transport protein K03304 tehA; tellurite resistance protein
D APJL_1374 putative sodium/calcium exchange protein K07301 yrbG; cation:H+ antiporter
D APJL_1962 panF; sodium/pantothenate symporter/pantothenate permease K14392 panF; sodium/pantothenate symporter
D APJL_0108 putP; sodium/proline symporter, proline permease K11928 putP; sodium/proline symporter
D APJL_0769 putative symporter K07862 sstT; serine/threonine transporter
D APJL_0986 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D APJL_1994 nhaA; Na+/H+ antiporter 1 K03313 nhaA; Na+:H+ antiporter, NhaA family
D APJL_0337 nhaB; Na+/H+ antiporter protein K03314 nhaB; Na+:H+ antiporter, NhaB family
D APJL_0476 Na+/H+ antiporter K18218 tet35; tetracycline resistance efflux pump
D APJL_1022 nhaP; Na+/H+ antiporter K03316 nhaP; Na+:H+ antiporter
D APJL_1203 kefBC; glutathione-regulated potassium-efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D APJL_1071 kefB; glutathione-regulated potassium-efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D APJL_1623 trkG; trk-type K+ transport system, membrane component K03498 trkH; trk/ktr system potassium uptake protein
D APJL_1587 trkA; TRK system potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D APJL_0106 uraA; uracil permease K02824 uraA; uracil permease
D APJL_1236 permease, xanthine/uracil family K06901 pbuG; adenine/guanine/hypoxanthine permease
D APJL_1087 putative xanthine/uracil permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D APJL_0590 tyrP1; tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D APJL_0591 tyrP2; tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D APJL_1441 tnaB; tryptophan-specific transport protein K03835 mtr; tryptophan-specific transport protein
D APJL_0867 sdaC; serine transporter K03837 sdaC; serine transporter
D APJL_0669 eriC; chloride channel protein K03281 clcA; chloride channel protein, CIC family
D APJL_1104 acr3; arsenite efflux pump ACR3 K03325 ACR3; arsenite transporter
D APJL_0882 C4-dicarboxylate transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D APJL_1576 wzxE; lipopolysaccharide biosynthesis protein K16693 wzxE; enterobacterial common antigen flippase
D APJL_1585 mviN; MviN virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D APJL_0340 hypothetical protein K13936 mdcF; malonate transporter and related proteins
D APJL_0902 predicted permease K24180 mleP; malate permease and related proteins
D APJL_0841 Lysine efflux permease K06895 lysE; L-lysine exporter family protein LysE/ArgO
D APJL_0205 rhtB; threonine efflux protein K05835 rhtC; threonine efflux protein
D APJL_1259 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D APJL_1258 predicted membrane protein K26606 azlD; branched chain amino acid efflux pump
D APJL_0765 perM; putative permease K03548 perM; putative permease
D APJL_2079 hypothetical protein K09125 yhhQ; queuosine precursor transporter
D APJL_1215 marC; integral membrane protein of the MarC family K05595 marC; multiple antibiotic resistance protein
D APJL_0018 ftsW; cell division protein K03588 ftsW; cell division protein FtsW
D APJL_0663 lipoprotein precursor K07224 efeO; iron uptake system component EfeO
D APJL_0664 ywbN; putative peroxidase YwbN precursor K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D APJL_0519 putative nickel/cobalt efflux system K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D APJL_1601 tonB1; periplasmic protein K03832 tonB; periplasmic protein TonB
D APJL_0076 tonB2; TobB energy transducing protein K03832 tonB; periplasmic protein TonB
D APJL_0317 pal; peptidoglycan-associated outer membrane lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D APJL_0315 tolA1; colicin import membrane protein K03646 tolA; colicin import membrane protein
D APJL_1740 tolA2; colicin import membrane protein K03646 tolA; colicin import membrane protein
D APJL_0316 tolB; colicin tolerance protein K03641 tolB; TolB protein
D APJL_1395 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D APJL_1394 oadA; oxaloacetate decarboxylase alpha chain K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D APJL_1393 Na+-transporting methylmalonyl-CoA/oxaloacetatedecarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D APJL_1705 dmsA; anaerobic dimethyl sulfoxide reductase chain A precursor K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D APJL_1706 dmsB; anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D APJL_1707 dmsC; anaerobic dimethyl sulfoxide reductase chain C/DMSO reductase anchor subunit K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D APJL_1834 torA; trimethylamine-n-oxide reductase precursor K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D APJL_1835 torC2; cytochrome c-type protein K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D APJL_1833 torD; trimethylamine-n-oxide oxidoreductase K03533 torD; TorA specific chaperone
D APJL_0687 torY; cytochrome c-type protein TorY K07821 torY; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorY
D APJL_0686 torZ; trimethylamine-N-oxide reductase 2 K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D APJL_1344 apxIIID; RTX-III toxin determinant D K11003 hlyD; membrane fusion protein, hemolysin D
D APJL_0579 membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D APJL_1850 hypothetical protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D APJL_0412 acrA1; membrane-fusion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D APJL_1194 nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D APJL_1385 ccmF; cytochrome c-type biogenesis protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D APJL_0825 transthyretin-like periplasmic protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D APJL_1851 putative outer membrane protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:apj02044]
D APJL_1345 apxIIIB; Toxin RTX-III translocation ATP-binding protein (RTX-III toxin determinant B) K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D APJL_1344 apxIIID; RTX-III toxin determinant D K11003 hlyD; membrane fusion protein, hemolysin D
D APJL_1284 pilF; putative fimbrial biogenesis and twitching motility protein PilF-like protein K02656 pilF; type IV pilus assembly protein PilF
D APJL_0548 rcpA; Flp pilus assembly protein, secretin K02280 cpaC; pilus assembly protein CpaC
D APJL_0547 rcpB; rough colony protein B K12509 rcpB; pilus assembly protein RcpB
D APJL_0546 tadZ; Flp pilus assembly protein, ATPase K02282 cpaE; pilus assembly protein CpaE
D APJL_0545 tadA; tight adherence protein A K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D APJL_0544 tadB; Flp pilus assembly protein K12510 tadB; tight adherence protein B
D APJL_0543 tadC; Flp pilus assembly protein K12511 tadC; tight adherence protein C
D APJL_0542 tadD; Flp pilus assembly protein K12512 tadD; tight adherence protein D
D APJL_0541 tadE; tight adherence protein E K12513 tadE; tight adherence protein E
D APJL_0540 tadF; tight adherence protein F K12514 tadF; tight adherence protein F
D APJL_0539 tadG; Flp pilus assembly protein K12515 tadG; tight adherence protein G
D APJL_1931 hypothetical protein K02679 ppdA; prepilin peptidase dependent protein A
D APJL_1930 hypothetical protein K02680 ppdB; prepilin peptidase dependent protein B
D APJL_1928 hypothetical protein K02681 ppdC; prepilin peptidase dependent protein C
D APJL_0892 apfA; possible prepilin peptidase dependent protein D K02682 ppdD; prepilin peptidase dependent protein D
D APJL_0891 hofB; protein transport protein HofB-like protein, pili/fimbriae biogenesis protein K02504 hofB; protein transport protein HofB
D APJL_0890 hofC; protein transport protein HofC-like protein K02505 hofC; protein transport protein HofC
D APJL_0201 hofQ; type II secretory protein K02507 hofQ; protein transport protein HofQ
D APJL_1399 predicted integral membrane protein K02221 yggT; YggT family protein
D APJL_1431 DNA uptake protein and related DNA-binding protein K02237 comEA; competence protein ComEA
D APJL_0768 rec2; recombination protein 2 K02238 comEC; competence protein ComEC
D APJL_0485 dsbC; thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D APJL_0244 secA; preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D APJL_1535 secB; protein export protein K03071 secB; preprotein translocase subunit SecB
D APJL_1083 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D APJL_1749 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D APJL_1084 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D APJL_0745 secG; preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D APJL_1815 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D APJL_1778 ffh; signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D APJL_1364 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D APJL_1082 yajC; preprotein translocase YajC subunit K03210 yajC; preprotein translocase subunit YajC
D APJL_1456 yidC; 60 kD inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D APJL_2033 tatA; Sec-independent protein secretion pathway components K03116 tatA; sec-independent protein translocase protein TatA
D APJL_2034 tatB; sec-independent protein secretion pathway component K03117 tatB; sec-independent protein translocase protein TatB
D APJL_2035 tatC; sec-independent protein secretion pathway component K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:apj02042]
D APJL_0967 apxIIA; hemolysin A K11005 hlyA; hemolysin A
D APJL_1346 apxIIIA; RTX-III toxin determinant A from serotype 8 K11005 hlyA; hemolysin A
D APJL_0233 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D APJL_1407 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:apj02022]
D APJL_1267 phoR; phosphate regulon sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D APJL_1268 phoB; phosphate regulon transcriptional regulatory protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D APJL_0622 sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D APJL_0623 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D APJL_1080 ygiY; sensor protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D APJL_1079 ygiX; transcriptional regulatory protein K07666 qseB; two-component system, OmpR family, response regulator QseB
D APJL_0945 arcB; sensor histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D APJL_0049 arcA; aerobic respiration control protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D APJL_0489 narQ; nitrate/nitrite sensor protein K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D APJL_0059 narP; nitrate/nitrite response regulator protein K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
C 02035 Bacterial motility proteins [BR:apj02035]
D APJL_1690 amino acid ABC transporter, substrate-binding K02424 tcyA; L-cystine transport system substrate-binding protein
D APJL_1284 pilF; putative fimbrial biogenesis and twitching motility protein PilF-like protein K02656 pilF; type IV pilus assembly protein PilF
D APJL_0548 rcpA; Flp pilus assembly protein, secretin K02280 cpaC; pilus assembly protein CpaC
D APJL_0546 tadZ; Flp pilus assembly protein, ATPase K02282 cpaE; pilus assembly protein CpaE
D APJL_0545 tadA; tight adherence protein A K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:apj04812]
D APJL_0461 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D APJL_0024 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ
D APJL_0023 ftsA; cell division protein K03590 ftsA; cell division protein FtsA
C 04147 Exosome [BR:apj04147]
D APJL_1004 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
D APJL_1132 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D APJL_0460 gapA; glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D APJL_1262 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D APJL_0188 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D APJL_1030 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D APJL_1953 dnaK; chaperone protein K04043 dnaK; molecular chaperone DnaK
D APJL_1156 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D APJL_1595 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D APJL_0587 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D APJL_1422 tufB1; elongation factor Tu K02358 tuf; elongation factor Tu
D APJL_1538 tufB2; elongation factor Tu K02358 tuf; elongation factor Tu
D APJL_0127 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D APJL_1445 fAA1; long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APJL_0418 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APJL_1311 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D APJL_0274 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D APJL_1201 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D APJL_0447 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D APJL_1420 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D APJL_1012 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D APJL_0362 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D APJL_0393 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D APJL_1987 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APJL_2036 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D APJL_0747 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D APJL_1474 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D APJL_0971 purH; AICAR transformylase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D APJL_0774 lpdA; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APJL_1324 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D APJL_1972 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D APJL_0840 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:apj02048]
D APJL_0215 cas1; CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1
D APJL_0214 helicase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D APJL_0219 CRISPR-associated protein K19127 csy1; CRISPR-associated protein Csy1
D APJL_0218 CRISPR-associated protein K19128 csy2; CRISPR-associated protein Csy2
D APJL_0217 CRISPR-associated protein K19129 csy3; CRISPR-associated protein Csy3
D APJL_0216 hypothetical protein K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D APJL_1433 Type I restriction enzyme EcoEI R protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D APJL_0304 hsdR; type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D APJL_0302 putative type I restriction enzyme specificity protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D APJL_1436 Type I restriction enzyme EcoAI specificity protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D APJL_1438 Type I restriction-modification system S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D APJL_1434 hsdM; Type I restriction-modification system M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D APJL_0298 hsdM2; putative type I restriction-modification systemmethyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D APJL_0193 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APJL_0654 type III restriction-modification system restriction subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
D APJL_0818 type III restriction enzyme K01156 res; type III restriction enzyme [EC:3.1.21.5]
D APJL_0655 type III restriction-modification system methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D APJL_0819 adenine specific DNA methylase Mod K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D APJL_0704 probable methylation subunit, type III restriction-modification system K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D APJL_1288 yoeB; Toxin YoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D APJL_1287 antitoxin of toxin-antitoxin stability system K19159 yefM; antitoxin YefM
D APJL_1757 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D APJL_1767 predicted nucleic acid-binding protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D APJL_0659 hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D APJL_0660 hypothetical protein K18829 mvpT; antitoxin VapB
D APJL_1766 hypothetical protein K18829 mvpT; antitoxin VapB
D APJL_1864 PilT protein-like protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D APJL_1219 pilT; PilT protein domain protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D APJL_0024 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ
D APJL_0461 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D APJL_0571 parC; topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D APJL_1266 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D APJL_1286 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D APJL_1547 hypothetical protein K09159 cptB; antitoxin CptB
D APJL_0941 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:apj04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:apj04090]
C 01504 Antimicrobial resistance genes [BR:apj01504]
D APJL_0476 Na+/H+ antiporter K18218 tet35; tetracycline resistance efflux pump
D APJL_0579 membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D APJL_0580 acriflavine resistance protein K18138 acrB; multidrug efflux pump
D APJL_1273 probable heavy metal-dependent transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D APJL_0695 putative HTH-type transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:apj00536]
D APJL_0979 large exoprotein involved in heme utilizationor adhesion K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:apj00537]
D APJL_0747 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:apj03100]
D APJL_T031 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APJL_T003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APJL_T078 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APJL_T066 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APJL_T045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APJL_T021 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APJL_T062 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APJL_T040 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APJL_T041 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APJL_T012 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APJL_T070 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APJL_T072 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APJL_T032 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APJL_T054 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APJL_T033 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APJL_T017 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D APJL_T023 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D APJL_T024 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D APJL_T058 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D APJL_T009 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D APJL_T050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APJL_T018 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APJL_T039 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APJL_T037 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APJL_T034 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APJL_T061 tRNA-His K14226 tRNA-His; tRNA His
D APJL_T002 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APJL_T008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APJL_T067 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APJL_T077 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APJL_T046 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APJL_T025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T015 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T038 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APJL_T073 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APJL_T074 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APJL_T075 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APJL_T013 tRNA-Met K14230 tRNA-Met; tRNA Met
D APJL_T026 tRNA-Met K14230 tRNA-Met; tRNA Met
D APJL_T014 tRNA-Met K14230 tRNA-Met; tRNA Met
D APJL_T019 tRNA-Met K14230 tRNA-Met; tRNA Met
D APJL_T071 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D APJL_T069 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D APJL_T022 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D APJL_T060 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D APJL_T042 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APJL_T081 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APJL_T082 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APJL_T006 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APJL_T049 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APJL_T048 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APJL_T052 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APJL_T053 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D APJL_T051 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D APJL_T027 tRNA-Val K14237 tRNA-Val; tRNA Val
D APJL_T028 tRNA-Val K14237 tRNA-Val; tRNA Val
D APJL_T029 tRNA-Val K14237 tRNA-Val; tRNA Val
D APJL_T030 tRNA-Val K14237 tRNA-Val; tRNA Val
D APJL_T016 tRNA-Val K14237 tRNA-Val; tRNA Val
D APJL_T063 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D APJL_R007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R076 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R059 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R068 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R047 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APJL_R004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R079 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R065 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R057 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R010 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R044 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APJL_R011 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R056 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R043 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R064 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R080 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APJL_R055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D APJL_1902 probable NADH-dependent butanol dehydrogenase 1 K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D APJL_1211 NADPH dehydrogenase (Xenobioticreductase) K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1]
D APJL_1042 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D APJL_0459 msrB; peptide methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D APJL_1218 putative GST-like protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D APJL_1870 hypothetical protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D APJL_1397 mauG; cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D APJL_0856 bcp; bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D APJL_1514 tpx; probable thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D APJL_1182 predicted iron-dependent peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D APJL_1518 pirin-related protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D APJL_1085 ftnA; ferritin-like protein 1 K02217 ftnA; ferritin [EC:1.16.3.2]
D APJL_1086 ftnB; ferritin-like protein 2 K02217 ftnA; ferritin [EC:1.16.3.2]
D APJL_1105 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D APJL_0165 Organic radical activating enzyme K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D APJL_1053 pflA; pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D APJL_1575 NADH oxidoreductase hcr K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D APJL_1368 tehB; Tellurite resistance protein TehB-like protein K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D APJL_1549 chuW; probable oxygen-independent coproporphyrinogen III oxidase K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D APJL_0389 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D APJL_1938 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D APJL_0157 apbE; thiamine biosynthesis lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D APJL_0988 glnE; glutamate ammonia ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D APJL_0312 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D APJL_0666 trpH; probable metal-dependent phosphoesterase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D APJL_0189 sixA; possible phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D APJL_1254 putative deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D APJL_0288 putative TatD family deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D APJL_1846 putative deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D APJL_1145 putative endonuclease precursor K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D APJL_0754 putative esterase/lipase K01175 ybfF; esterase [EC:3.1.-.-]
D APJL_1743 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D APJL_1161 hypothetical protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D APJL_0455 putative translation initiation inhibitor K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D APJL_0876 hypothetical protein K18446 ygiF; triphosphatase [EC:3.6.1.25]
D APJL_1606 predicted esterase of the alpha/beta hydrolase fold K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D APJL_1144 nifS; probable cysteine desulfurase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D APJL_1718 fucU; fucose operon FucU protein K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D APJL_1419 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D APJL_0170 rnfD; putative Na-translocating NADH-quinone reductase K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D APJL_0168 rnfC; putative iron-sulfur binding NADH dehydrogenase K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D APJL_0167 rnfB; putative ferredoxin II, iron sulfur protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D APJL_0151 nqrA; Na+-translocating NADH-ubiquinone oxidoreductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D APJL_0152 nqrB; Na+-translocating NADH-ubiquinone oxidoreductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D APJL_0153 nqrC; Na+-translocating NADH-ubiquinone oxidoreductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D APJL_0154 nqrD; Na+-translocating NADH-ubiquinone oxidoreductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D APJL_0155 nqrE; Na+-transporting NADH-ubiquinone oxidoreductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D APJL_0156 nqrF; Na+-translocating NADH-ubiquinone oxidoreductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
C 99981 Carbohydrate metabolism
D APJL_1773 sfsA; probable regulator for maltose metabolism K06206 sfsA; sugar fermentation stimulation protein A
D APJL_0473 ykgE; putative dehydrogenase subunit K18928 lldE; L-lactate dehydrogenase complex protein LldE
D APJL_0472 ykgF; iron-sulfur electron transport protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D APJL_0471 hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D APJL_0903 fdhD; formate dehydrogenase formation protein K02379 fdhD; FdhD protein
D APJL_0934 fdx2; ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D APJL_0171 rnfG; electron transport complex protein K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D APJL_0172 rnfE; Na-translocating NADH-quinone reductase K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D APJL_0166 rnfA; probable Na+-translocating NADH-quinone oxidoreductase K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D APJL_1591 mioC; MioC protein K06205 mioC; MioC protein
D APJL_0940 iscU; nifU-like protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D APJL_1148 cytB562; soluble cytochrome b562 K15536 cybC; soluble cytochrome b562
D APJL_1462 napD; possible NapD protein K02570 napD; periplasmic nitrate reductase NapD
D APJL_1463 napF; ferredoxin-type protein K02572 napF; ferredoxin-type protein NapF
D APJL_1070 nfrE; cytochrome c-type biogenesis protein K04016 nrfE; cytochrome c-type biogenesis protein NrfE
D APJL_1068 nrfF; formate-dependent nitrite reductase complex NrfF subunit K04017 nrfF; formate-dependent nitrite reductase complex subunit NrfF
D APJL_1067 nrfG; formate-dependent nitrite reductase complex NrfG subunit K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG
D APJL_1232 fldA; flavodoxin A K03839 fldA; flavodoxin I
D APJL_1457 napC; nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit K02569 napC; cytochrome c-type protein NapC
D APJL_1460 napG; ferredoxin 2 K02573 napG; ferredoxin-type protein NapG
D APJL_1459 napH; polyferredoxin K02574 napH; ferredoxin-type protein NapH
D APJL_0101 nrfB; nitrate reductase, cytochrome-C type protein K04013 nrfB; cytochrome c-type protein NrfB
D APJL_0102 nrfC; nitrate reductase, Fe-S protein K04014 nrfC; protein NrfC
D APJL_0103 nrfD; nitrate reductase, transmembrane protein K04015 nrfD; protein NrfD
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D APJL_1317 cysZ; cysteine synthetase K06203 cysZ; CysZ protein
D APJL_1774 gloA2; lactoylglutathione lyase K08234 yaeR; glyoxylase I family protein
D APJL_0052 hypothetical protein K06997 yggS; PLP dependent protein
D APJL_1638 hypothetical protein K26607 cyuA; putative L-cysteine desulfidase
C 99986 Glycan metabolism
D APJL_0740 predicted membrane protein K08992 lapA; lipopolysaccharide assembly protein A
D APJL_0739 predicted N-acetylglucosaminyl transferase K19804 lapB; lipopolysaccharide assembly protein B
D APJL_1138 lpsA2; lipooligosaccharide biosynthesis protein K07270 K07270; glycosyl transferase, family 25
D APJL_1046 lsgD; glycosyltransferase involved in LPS biosynthesis K07270 K07270; glycosyl transferase, family 25
D APJL_1000 lbgA; lipooligosaccharide galactosyltransferase I K07270 K07270; glycosyl transferase, family 25
D APJL_1137 lpsA1; lipooligosaccharide biosynthesis protein K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D APJL_1025 hemY; HemY protein K02498 hemY; HemY protein
D APJL_2032 ubiB; probable ubiquinone biosynthesis protein K03688 ubiB; ubiquinone biosynthesis protein
D APJL_2031 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D APJL_1157 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
C 99988 Secondary metabolism
D APJL_1512 sufI1; SufI protein K04753 sufI; suppressor of ftsI
D APJL_2045 predicted flavoprotein K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D APJL_2046 hypothetical protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D APJL_0726 cspD; cold shock-like protein CspD K03704 cspA; cold shock protein
D APJL_0119 cspC; cold shock-like protein K03704 cspA; cold shock protein
D APJL_1283 predicted transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D APJL_0846 ccmA1; ABC-type multidrug transport system, ATPase component K13926 rbbA; ribosome-dependent ATPase
C 99975 Protein processing
D APJL_1533 tig; trigger factor K03545 tig; trigger factor
D APJL_1871 possible permease K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D APJL_0908 fdhE; formate dehydrogenase formation protein K02380 fdhE; FdhE protein
D APJL_1647 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein
D APJL_1646 ureF; urease accessory protein UreF K03188 ureF; urease accessory protein
D APJL_1645 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D APJL_1644 ureH; urease accessory protein UreH K03190 ureD; urease accessory protein
D APJL_0879 smpB; SsrA-binding protein, small major protein B K03664 smpB; SsrA-binding protein
D APJL_1355 hypC; hydrogenase maturation factor K04653 hypC; hydrogenase expression/formation protein HypC
D APJL_1342 hypD; hydrogenase maturation factor K04654 hypD; hydrogenase expression/formation protein HypD
D APJL_1343 hypE; hydrogenase maturation factor K04655 hypE; hydrogenase expression/formation protein HypE
D APJL_1348 hypF; hydrogenase maturation factor K04656 hypF; hydrogenase maturation protein HypF
D APJL_1782 comM; competence protein M K07391 comM; magnesium chelatase family protein
D APJL_0150 orfG; transformation locus protein OrfG-like protein K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D APJL_2017 radC; DNA repair protein K03630 radC; DNA repair protein RadC
D APJL_1166 rmuC; DNA recombination protein RmuC-like protein K09760 rmuC; DNA recombination protein RmuC
D APJL_0145 predicted ATP-dependent endonuclease of the OLD family K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D APJL_1381 predicted endonuclease K07460 yraN; putative endonuclease
D APJL_1744 smf; Smf protein K04096 smf; DNA processing protein
D APJL_0464 putative ATPase K07478 ycaJ; putative ATPase
D APJL_1160 conserved DNA topoisomerase I-related protein K07479 yrdD; putative DNA topoisomerase
D APJL_0210 transposase and inactivated derivative K07483 K07483; transposase
D APJL_0608 transposase and inactivated derivative K07483 K07483; transposase
D APJL_0928 transposase and inactivated derivative K07483 K07483; transposase
D APJL_1074 transposase and inactivated derivative K07483 K07483; transposase
D APJL_0229 transposase and inactivated derivative K07483 K07483; transposase
D APJL_1895 transposase and inactivated derivative K07483 K07483; transposase
D APJL_1466 transposase and inactivated derivative K07483 K07483; transposase
D APJL_1950 transposase and inactivated derivative K07483 K07483; transposase
D APJL_1525 transposase and inactivated derivative K07483 K07483; transposase
D APJL_2072 transposase IS200-like protein K07491 rayT; REP-associated tyrosine transposase
D APJL_0209 transposase K07497 K07497; putative transposase
D APJL_0606 transposase K07497 K07497; putative transposase
D APJL_1007 transposase K07497 K07497; putative transposase
D APJL_1075 transposase K07497 K07497; putative transposase
D APJL_0929 transposase K07497 K07497; putative transposase
D APJL_1896 transposase K07497 K07497; putative transposase
D APJL_1465 transposase K07497 K07497; putative transposase
D APJL_1949 transposase K07497 K07497; putative transposase
D APJL_1526 transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D APJL_1297 rhodanese-related sulfurtransferase K03972 pspE; phage shock protein E
D APJL_0075 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D APJL_0719 putative phosphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D APJL_0192 conserved putative sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D APJL_1408 Na+-dependent transporters of the SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D APJL_1146 Na+/alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D APJL_0520 putative sodium/alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D APJL_2039 brnQ; branched-chain amino acid permease K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D APJL_0411 predicted Na+-dependent transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D APJL_1034 nucleoside permease K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D APJL_1176 citT; di- and tricarboxylate transporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D APJL_0985 putative transport protein K07085 K07085; putative transport protein
C 99978 Cell growth
D APJL_0991 ispZ; probable intracellular septation protein K06190 ispZ; intracellular septation protein
D APJL_1639 regulator of cell morphogenesis and NO signaling K07322 ytfE; regulator of cell morphogenesis and NO signaling
D APJL_0839 membrane-bound metallopeptidase K22719 envC; murein hydrolase activator
C 99993 Cell motility
D APJL_1793 possible DNA transformation protein K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D APJL_0120 proQ; possible ProP effector K03607 proQ; ProP effector
D APJL_0645 uspA; universal stress protein A K06149 uspA; universal stress protein A
D APJL_0053 typA; GTP-binding protein K06207 typA; GTP-binding protein
D APJL_1517 gcvR; ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D APJL_0339 PhoH-like ATP-binding protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D APJL_0720 SH3 domain protein K07184 ygiM; SH3 domain protein
D APJL_1240 aphA; AphA (smp-like) protein K07186 smp; membrane protein
D APJL_1242 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D APJL_0503 lolA; outer membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D APJL_0780 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D APJL_1965 vacJ; VacJ lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D APJL_1581 putative transport protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D APJL_0038 lpp; outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D APJL_1978 lppB; outer membrane antigenic lipoprotein B K06194 nlpD; lipoprotein NlpD
D APJL_0569 nlpI; lipoprotein K05803 nlpI; lipoprotein NlpI
D APJL_1728 phyB; PhyB, capsule biosynthetic locus protein K07265 kpsS; capsular polysaccharide export protein
D APJL_1727 lipA2; capsule polysaccharide modification protein K07266 kpsC; capsular polysaccharide export protein
D APJL_1430 oapA; opacity associated protein A K07268 oapA; opacity associated protein
D APJL_1102 ompW; outer membrane protein ompW precursor K07275 ompW; outer membrane protein
D APJL_2051 hypothetical protein K07280 K07280; outer membrane protein
D APJL_0239 putative lipoprotein K07286 yajG; uncharacterized lipoprotein
D APJL_0845 acrA2; membrane-fusion protein K01993 ABC-2.TX; HlyD family secretion protein
D APJL_1147 putative membrane protein K11744 tqsA; AI-2 transport protein TqsA
D APJL_1666 hypothetical protein K04062 osmB; osmotically inducible lipoprotein OsmB
D APJL_1386 ccmE; cytochrome c-type biogenesis protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D APJL_1541 ccmH_1; cytochrome C-type biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D APJL_1542 ccmH_2; cytochrome C-type biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D APJL_1199 hypothetical protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D APJL_1136 cyaY; CyaY protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D APJL_1237 putative uncharacterized protein involved inoxidation of intracellular sulfur K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D APJL_0449 cvpA; colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D APJL_1530 elaA; acetyltransferase K02348 elaA; ElaA protein
D APJL_0379 autonomous glycyl radical cofactor K06866 grcA; autonomous glycyl radical cofactor
D APJL_1521 hypothetical protein K07001 K07001; NTE family protein
D APJL_1484 hypothetical protein K15724 erpA; iron-sulfur cluster insertion protein
D APJL_1997 tRNA-processing ribonuclease BN K07058 K07058; membrane protein
D APJL_0090 hypothetical protein K07113 fxsA; UPF0716 protein FxsA
D APJL_1293 sufE; SufE protein probably involved in Fe-S center assembly K02426 sufE; cysteine desulfuration protein SufE
D APJL_0832 hypothetical protein K07153 hflD; high frequency lysogenization protein
D APJL_0358 lemA; LemA protein K03744 lemA; LemA protein
D APJL_1672 hypothetical protein K03745 slyX; SlyX protein
D APJL_1281 sprT; probable SprT protein K02742 sprT; SprT protein
D APJL_0468 sanA; SanA protein K03748 sanA; SanA protein
D APJL_1898 PqiA protein K03808 pqiA; paraquat-inducible protein A
D APJL_0321 hypothetical membrane protein K08990 ycjF; putative membrane protein
D APJL_1722 predicted periplasmic/secreted protein K08996 yagU; putative membrane protein
D APJL_1691 hypothetical protein K09858 K09858; SEC-C motif domain protein
D APJL_1246 maltose operon periplasmic protein K05775 malM; maltose operon periplasmic protein
D APJL_1990 psiE2; PsiE-like protein K13256 psiE; protein PsiE
D APJL_0069 psiE1; phosphate-starvation-inducible protein K13256 psiE; protein PsiE
D APJL_1396 phnA; alkylphosphonate uptake protein K06193 phnA; protein PhnA
C 99997 Function unknown
D APJL_0356 beta-propeller domain of methanol dehydrogenase type K06872 K06872; uncharacterized protein
D APJL_0919 hydrolase of the alpha/beta superfamily K06889 K06889; uncharacterized protein
D APJL_0877 hypothetical protein K06918 K06918; uncharacterized protein
D APJL_0600 proton glutamate symport protein K06956 K06956; uncharacterized protein
D APJL_0956 predicted acetyltransferase K06975 K06975; uncharacterized protein
D APJL_0576 putative sulphatase K07014 K07014; uncharacterized protein
D APJL_2062 inner membrane protein K07034 K07034; uncharacterized protein
D APJL_0614 hypothetical protein K07054 K07054; uncharacterized protein
D APJL_1307 hypothetical protein K07071 K07071; uncharacterized protein
D APJL_1621 putative immunogenic protein K07080 K07080; uncharacterized protein
D APJL_0897 predicted permease K07090 K07090; uncharacterized protein
D APJL_1939 predicted permease K07090 K07090; uncharacterized protein
D APJL_1008 predicted phosphohydrolase K07098 K07098; uncharacterized protein
D APJL_1081 hypothetical protein K07109 K07109; uncharacterized protein
D APJL_2097 putative inner membrane protein K07112 K07112; uncharacterized protein
D APJL_2026 inner membrane protein K07112 K07112; uncharacterized protein
D APJL_1380 hypothetical protein K07121 K07121; uncharacterized protein
D APJL_0658 hypothetical protein K07133 K07133; uncharacterized protein
D APJL_0792 putative ATPase K07133 K07133; uncharacterized protein
D APJL_0811 ycbX; putative Fe-S protein K07140 K07140; MOSC domain-containing protein
D APJL_1035 predicted membrane protein K07149 K07149; uncharacterized protein
D APJL_0735 yqgA; putative inner membrane protein K07150 K07150; uncharacterized protein
D APJL_1986 hypothetical protein K08998 K08998; uncharacterized protein
D APJL_1398 hypothetical protein K09131 K09131; uncharacterized protein
D APJL_1516 hypothetical protein K09157 K09157; uncharacterized protein
D APJL_1628 hypothetical protein K09158 K09158; uncharacterized protein
D APJL_0494 hypothetical protein K09160 K09160; uncharacterized protein
D APJL_0989 hypothetical protein K09780 K09780; uncharacterized protein
D APJL_1024 inner membrane protein K09781 K09781; uncharacterized protein
D APJL_1842 hypothetical protein K09790 K09790; uncharacterized protein
D APJL_1289 hypothetical protein K09791 K09791; uncharacterized protein
D APJL_1188 hypothetical protein K09794 K09794; uncharacterized protein
D APJL_0838 hypothetical protein K09798 K09798; uncharacterized protein
D APJL_0266 hypothetical protein K09801 K09801; uncharacterized protein
D APJL_0708 hypothetical protein K09802 K09802; uncharacterized protein
D APJL_0757 hypothetical protein K09803 K09803; uncharacterized protein
D APJL_0381 hypothetical protein K09824 virK; uncharacterized protein
D APJL_0480 lapB; putative membrane protein K09824 virK; uncharacterized protein
D APJL_0158 hypothetical protein K05952 K05952; uncharacterized protein
D APJL_0596 hypothetical protein K09861 K09861; uncharacterized protein
D APJL_0887 yacG; zinc-binding protein K09862 K09862; uncharacterized protein
D APJL_0114 hypothetical protein K09891 K09891; uncharacterized protein
D APJL_0984 hypothetical protein K09894 K09894; uncharacterized protein
D APJL_0112 hypothetical protein K09895 K09895; uncharacterized protein
D APJL_1910 hypothetical protein K09896 K09896; uncharacterized protein
D APJL_2027 hypothetical protein K09897 K09897; uncharacterized protein
D APJL_2013 hypothetical protein K09898 K09898; uncharacterized protein
D APJL_0993 membrane protein K09899 K09899; uncharacterized protein
D APJL_1366 hypothetical protein K09901 K09901; uncharacterized protein
D APJL_0712 hypothetical protein K09902 K09902; uncharacterized protein
D APJL_0577 hypothetical protein K09904 K09904; uncharacterized protein
D APJL_0039 hypothetical protein K09907 K09907; uncharacterized protein
D APJL_0593 hypothetical protein K09908 K09908; uncharacterized protein
D APJL_0391 hypothetical protein K09909 K09909; uncharacterized protein
D APJL_0987 hypothetical protein K09910 K09910; uncharacterized protein
D APJL_1934 hypothetical protein K09911 K09911; uncharacterized protein
D APJL_0874 hypothetical protein K09917 K09917; uncharacterized protein
D APJL_0814 hypothetical protein K09922 K09922; uncharacterized protein
D APJL_1400 hypothetical protein K09923 K09923; uncharacterized protein
D APJL_0348 hlpB; lipoprotein HlpB K09924 K09924; uncharacterized protein
D APJL_0634 hypothetical protein K09946 K09946; uncharacterized protein
D APJL_0736 hypothetical protein K09979 K09979; uncharacterized protein
D APJL_0718 phosphate transport regulator K07220 K07220; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 27, 2024