+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudarthrobacter phenanthrenivorans

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Asphe3_14830 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Asphe3_26070 deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Asphe3_08100 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Asphe3_14850 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Asphe3_03290 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Asphe3_32960 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Asphe3_08220 DNA/RNA helicase, superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Asphe3_14670 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Asphe3_15030 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Asphe3_20610 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Asphe3_24280 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Asphe3_16100 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Asphe3_14830 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Asphe3_26070 deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Asphe3_08100 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Asphe3_41440 hypothetical protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E Asphe3_33360 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Asphe3_14840 DNA-O6-methylguanine--protein-cysteine S-methyltransferase; Transcriptional regulator Ada;DNA-3-methyladenine glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Asphe3_14850 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Asphe3_03290 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Asphe3_00180 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Asphe3_23660 DNA-(apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Asphe3_15210 DNA-(apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Asphe3_22840 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E Asphe3_06570 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E Asphe3_32960 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Asphe3_11550 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Asphe3_05210 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E Asphe3_13060 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Asphe3_17800 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Asphe3_09170 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Asphe3_17980 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E Asphe3_17880 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E Asphe3_18010 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E Asphe3_26150 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Asphe3_26180 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Asphe3_08500 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Asphe3_17800 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E Asphe3_13060 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Asphe3_28300 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Asphe3_28290 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Asphe3_27860 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Asphe3_19880 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Asphe3_12560 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E Asphe3_26880 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Asphe3_26890 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Asphe3_15630 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Asphe3_00020 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Asphe3_19720 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Asphe3_07550 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Asphe3_24400 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Asphe3_26210 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Asphe3_05810 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Asphe3_13060 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Asphe3_26150 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Asphe3_26180 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Asphe3_08500 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Asphe3_41770 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E Asphe3_39320 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E Asphe3_42840 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E Asphe3_22960 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E Asphe3_08990 T/G mismatch-specific endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Asphe3_14430 protein RecA K03553 recA; recombination protein RecA E Asphe3_20360 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Asphe3_20350 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Asphe3_20370 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Asphe3_19850 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Asphe3_24350 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E Asphe3_24360 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Asphe3_14430 protein RecA K03553 recA; recombination protein RecA E Asphe3_03460 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Asphe3_00040 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E Asphe3_23740 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Asphe3_19540 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Asphe3_05800 DNA replication and repair protein RecR K06187 recR; recombination protein RecR E Asphe3_14990 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Asphe3_20360 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Asphe3_20350 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Asphe3_20370 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E Asphe3_24350 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E Asphe3_24360 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E Asphe3_37480 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E Asphe3_04260 DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku E Asphe3_38430 DNA polymerase LigD, polymerase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E Asphe3_04250 ATP-dependent DNA ligase LigD polymerase module;ATP-dependent DNA ligase LigD ligase module;ATP-dependent DNA ligase LigD phosphoesterase module K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Asphe3_00070 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Asphe3_16020 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Asphe3_00060 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Asphe3_15950 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Asphe3_32800 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F Asphe3_29220 topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Asphe3_37520 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Asphe3_19540 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Asphe3_05800 DNA replication and repair protein RecR K06187 recR; recombination protein RecR F Asphe3_13060 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Asphe3_09230 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Asphe3_07250 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Asphe3_09170 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Asphe3_17980 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F Asphe3_17880 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Asphe3_31960 nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Asphe3_15410 nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Asphe3_02030 nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V D Asphe3_02040 SOS response UmuD protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D Asphe3_14430 protein RecA K03553 recA; recombination protein RecA D Asphe3_14510 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Asphe3_14990 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Asphe3_20480 DNA-directed DNA polymerase III PolC K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D Asphe3_41770 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Asphe3_39320 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Asphe3_42840 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Asphe3_22960 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Asphe3_14440 uncharacterized conserved protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Asphe3_14500 putative glutamate--cysteine ligase/putative amino acid ligase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Asphe3_06580 ATP dependent helicase, Lhr family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D Asphe3_14670 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Asphe3_15030 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Asphe3_20610 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Asphe3_24280 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Asphe3_28580 ADP-ribose pyrophosphatase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D Asphe3_15010 NTP pyrophosphohydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D Asphe3_16100 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Asphe3_21410 ribonucleoside-diphosphate reductase class Ib alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Asphe3_21400 ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024