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Transcription Machinery - Abrus precatorius (Indian licorice)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E 113869989 DNA-directed RNA polymerase II subunit 1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E 113862274 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E 113858382 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E 113865396 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E 113850098 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E 113853013 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E 113852519 DNA-directed RNA polymerase II subunit RPB7 isoform X1 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 113848249 DNA-directed RNA polymerases II, IV and V subunit 9B K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
E 113853049 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E 113863225 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113853189 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113867861 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113856468 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113872892 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 113870880 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 113859000 DNA-directed RNA polymerases II and V subunit 8A-like isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 113855346 DNA-directed RNA polymerases II and V subunit 8A-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 113867998 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 113858662 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
E 113869498 DNA-directed RNA polymerase IV subunit 1 K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
E 113865473 DNA-directed RNA polymerase V subunit 1 K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
E 113865113 DNA-directed RNA polymerases IV and V subunit 2 K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
E 113873049 DNA-directed RNA polymerase V subunit 7-like K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7
C Basal transcription factors
D TFIIA
E 113854409 transcription initiation factor IIA large subunit-like isoform X1 K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E 113857877 transcription initiation factor IIA large subunit-like K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E 113847003 transcription initiation factor IIA subunit 2 K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E 113860877 transcription initiation factor IIB-like K03124 TFIIB; transcription initiation factor TFIIB
E 113872199 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
E 113868971 plant-specific TFIIB-related protein 1 K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E 113856371 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 113870025 transcription initiation factor TFIID subunit 1 K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
E 113848164 transcription initiation factor TFIID subunit 2 isoform X1 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 113847014 transcription initiation factor TFIID subunit 4b-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 113865460 transcription initiation factor TFIID subunit 4b-like isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 113865458 transcription initiation factor TFIID subunit 5 isoform X1 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 113846096 transcription initiation factor TFIID subunit 5-like K03130 TAF5; transcription initiation factor TFIID subunit 5
E 113862910 transcription initiation factor TFIID subunit 6 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 113854520 transcription initiation factor TFIID subunit 6-like isoform X1 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 113846323 transcription initiation factor TFIID subunit 7 isoform X1 K03132 TAF7; transcription initiation factor TFIID subunit 7
E 113872770 transcription initiation factor TFIID subunit 8 K14649 TAF8; transcription initiation factor TFIID subunit 8
E 113862969 transcription initiation factor TFIID subunit 8-like K14649 TAF8; transcription initiation factor TFIID subunit 8
E 113857774 transcription initiation factor TFIID subunit 8 K14649 TAF8; transcription initiation factor TFIID subunit 8
E 113874958 transcription initiation factor TFIID subunit 9 K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E 113860714 transcription initiation factor TFIID subunit 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 113850352 transcription initiation factor TFIID subunit 11 K03135 TAF11; transcription initiation factor TFIID subunit 11
E 113873181 transcription initiation factor TFIID subunit 13 K03127 TAF13; transcription initiation factor TFIID subunit 13
D TFIIE
E 113847534 general transcription factor IIE subunit 1-like isoform X1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 113846166 general transcription factor IIE subunit 1-like K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 113855048 general transcription factor IIE subunit 2 K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
E 113869353 transcription initiation factor IIE subunit beta-like K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
D TFIIF
E 113872965 transcription initiation factor IIF subunit alpha isoform X1 K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E 113865337 transcription initiation factor IIF subunit beta isoform X1 K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
E 113866876 general transcription factor IIF subunit 2 K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E 113871365 general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 113862807 general transcription factor IIH subunit 2-like isoform X1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 113874076 general transcription and DNA repair factor IIH subunit TFB4 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 113857919 general transcription and DNA repair factor IIH subunit TFB2 isoform X1 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 113853847 general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 113867231 general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 113854726 general transcription and DNA repair factor IIH subunit TFB5 isoform X1 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 113866992 cyclin-dependent kinase D-3-like isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 113855289 cyclin-dependent kinase D-3-like isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 113867459 uncharacterized protein LOC113867459 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 113872054 cyclin-H1-1 K06634 CCNH; cyclin H
C Mediator complex
D Head
E 113849015 mediator of RNA polymerase II transcription subunit 6 isoform X1 K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E 113867721 mediator of RNA polymerase II transcription subunit 11 isoform X1 K15131 MED11; mediator of RNA polymerase II transcription subunit 11
E 113854567 mediator of RNA polymerase II transcription subunit 17 K15133 MED17; mediator of RNA polymerase II transcription subunit 17
E 113871792 mediator of RNA polymerase II transcription subunit 18 K15135 MED18; mediator of RNA polymerase II transcription subunit 18
E 113847466 mediator of RNA polymerase II transcription subunit 20a-like K13528 MED20; mediator of RNA polymerase II transcription subunit 20
E 113856232 mediator of RNA polymerase II transcription subunit 22a-like K15139 MED22; mediator of RNA polymerase II transcription subunit 22
E 113873179 mediator of RNA polymerase II transcription subunit 28 K15141 MED28; mediator of RNA polymerase II transcription subunit 28
D Middle
E 113857154 mediator of RNA polymerase II transcription subunit 7a-like isoform X1 K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E 113858728 mediator of RNA polymerase II transcription subunit 10b-like isoform X1 K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E 113873356 mediator of RNA polymerase II transcription subunit 21-like K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E 113865679 mediator of RNA polymerase II transcription subunit 21-like isoform X1 K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E 113871265 mediator of RNA polymerase II transcription subunit 31 K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E 113860974 mediator of RNA polymerase II transcription subunit 14 isoform X1 K15156 MED14; mediator of RNA polymerase II transcription subunit 14
D CDK-module
E 113862859 cyclin-dependent kinase E-1-like isoform X1 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 113853957 cyclin-dependent kinase E-1-like isoform X1 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 113861143 cyclin-C1-2-like isoform X1 K15161 CCNC; cyclin-C
E 113850037 mediator of RNA polymerase II transcription subunit 13 isoform X1 K15164 MED13; mediator of RNA polymerase II transcription subunit 13
D Other mediators
E 113868444 mediator of RNA polymerase II transcription subunit 23 isoform X1 K15166 MED23; mediator of RNA polymerase II transcription subunit 23
E 113869535 mediator of RNA polymerase II transcription subunit 25 isoform X1 K15168 MED25; mediator of RNA polymerase II transcription subunit 25
E 113863037 mediator of RNA polymerase II transcription subunit 27 isoform X1 K15170 MED27; mediator of RNA polymerase II transcription subunit 27
E 113864746 mediator of RNA polymerase II transcription subunit 32 K27471 MED32; mediator of RNA polymerase II transcription subunit 32
E 113867308 mediator of RNA polymerase II transcription subunit 33B-like K27472 MED33; mediator of RNA polymerase II transcription subunit 33
E 113871586 mediator of RNA polymerase II transcription subunit 33A isoform X1 K27472 MED33; mediator of RNA polymerase II transcription subunit 33
E 113863168 mediator of RNA polymerase II transcription subunit 33A-like isoform X1 K27472 MED33; mediator of RNA polymerase II transcription subunit 33
C Coactivators
D SAGA/TFTC/STAGA complex
E 113862728 histone acetyltransferase GCN5 isoform X1 K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 113869294 transformation/transcription domain-associated protein isoform X1 K08874 TRRAP; transformation/transcription domain-associated protein
E 113856341 transcriptional adapter ADA2-like isoform X1 K11314 TADA2A; transcriptional adapter 2-alpha
E 113870023 transcriptional adapter ADA2b isoform X1 K11314 TADA2A; transcriptional adapter 2-alpha
E 113848164 transcription initiation factor TFIID subunit 2 isoform X1 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 113847014 transcription initiation factor TFIID subunit 4b-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 113865460 transcription initiation factor TFIID subunit 4b-like isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 113865458 transcription initiation factor TFIID subunit 5 isoform X1 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 113846096 transcription initiation factor TFIID subunit 5-like K03130 TAF5; transcription initiation factor TFIID subunit 5
E 113862910 transcription initiation factor TFIID subunit 6 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 113854520 transcription initiation factor TFIID subunit 6-like isoform X1 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 113846323 transcription initiation factor TFIID subunit 7 isoform X1 K03132 TAF7; transcription initiation factor TFIID subunit 7
E 113874958 transcription initiation factor TFIID subunit 9 K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E 113860714 transcription initiation factor TFIID subunit 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 113849926 ataxin-7-like protein 3 isoform X1 K11363 SGF11; SAGA-associated factor 11
E 113858276 SAGA-associated factor 29 homolog B isoform X1 K11364 SGF29; SAGA-associated factor 29
E 113874228 protein CHROMATIN REMODELING 5-like isoform X1 K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E 113855722 protein CHROMATIN REMODELING 5-like K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E 113863400 transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 113846731 ubiquitin carboxyl-terminal hydrolase 22 K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E 113846839 ubiquitin carboxyl-terminal hydrolase 22-like isoform X1 K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E 113871250 spliceosome-associated protein 130 A K12830 SF3B3; splicing factor 3B subunit 3
E 113862617 pre-mRNA-splicing factor prp12 isoform X1 K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E 113849807 ATP-dependent helicase BRM-like K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 113846805 chromatin structure-remodeling complex protein BSH isoform X1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E 113870304 SWI/SNF complex subunit SWI3C isoform X1 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 113871833 SWI/SNF complex subunit SWI3A K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 113865582 SWI/SNF complex subunit SWI3B K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 113866365 SWI/SNF complex subunit SWI3D-like K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 113862654 SWI/SNF complex component SNF12 homolog K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 113850030 SWI/SNF complex component SNF12 homolog K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 113852814 SWI/SNF complex component SNF12 homolog K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 113867229 SWI/SNF complex component SNF12 homolog isoform X1 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 113849065 actin-related protein 4-like isoform X1 K11340 ACTL6A; actin-like protein 6A
E 113854910 actin-related protein 4-like K11340 ACTL6A; actin-like protein 6A
D SWI/SNF complex
E 113846805 chromatin structure-remodeling complex protein BSH isoform X1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
D RSC complex
D Others
E 113865320 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 113855397 RNA polymerase II transcriptional coactivator KELP isoform X1 K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 113869348 protein SHORT ROOT IN SALT MEDIUM 1 isoform X1 K25827 CCAR1; cell division cycle and apoptosis regulator protein 1
C Other transcription-related factors
D Transcription elongation factors
E 113874145 transcription elongation factor TFIIS K03145 TFIIS; transcription elongation factor S-II
E 113859102 transcription elongation factor SPT4 homolog 2-like isoform X1 K15171 SUPT4H1; transcription elongation factor SPT4
E 113852576 transcription elongation factor SPT4 homolog 2 isoform X1 K15171 SUPT4H1; transcription elongation factor SPT4
E 113853028 putative transcription elongation factor SPT5 homolog 1 K15172 SUPT5H; transcription elongation factor SPT5
E 113863315 transcription elongation factor SPT6 homolog isoform X1 K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E 113872376 polyadenylation and cleavage factor homolog 4 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 113861429 uncharacterized protein LOC113861429 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 113866974 cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 113872997 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 113847055 uncharacterized protein LOC113847055 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 113869351 30-kDa cleavage and polyadenylation specificity factor 30 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 113870723 serine/threonine-protein phosphatase PP1 isozyme 3-like isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 113870982 serine/threonine-protein phosphatase PP1-like isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 113871075 serine/threonine-protein phosphatase PP1-like isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 113860700 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 113850843 serine/threonine-protein phosphatase PP1 isozyme 1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 113863751 serine/threonine-protein phosphatase PP1-like isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 113853596 serine/threonine-protein phosphatase PP1 isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 113846116 serine/threonine-protein phosphatase PP1 isozyme 4 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 113849600 symplekin isoform X1 K06100 SYMPK; symplekin
E 113864276 uncharacterized protein LOC113864276 isoform X1 K06100 SYMPK; symplekin
E 113867093 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 113846725 5'-3' exoribonuclease 3 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 113868658 decapping nuclease DXO homolog, chloroplastic isoform X1 K14845 RAI1; RAT1-interacting protein
E 113871289 regulation of nuclear pre-mRNA domain-containing protein 1B isoform X1 K15559 RTT103; regulator of Ty1 transposition protein 103
E 113861979 regulation of nuclear pre-mRNA domain-containing protein 1A K15559 RTT103; regulator of Ty1 transposition protein 103
E 113867390 regulation of nuclear pre-mRNA domain-containing protein 1B-like K15559 RTT103; regulator of Ty1 transposition protein 103
E 113851626 uncharacterized ATP-dependent helicase C29A10.10c-like isoform X1 K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
E 113858708 peptidyl-prolyl cis-trans isomerase Pin1 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E 113849270 protein PAF1 homolog K15174 PAF1; RNA polymerase II-associated factor 1
E 113869370 protein CDC73 homolog isoform X1 K15175 CDC73; parafibromin
E 113852992 protein CTR9 homolog isoform X1 K15176 CTR9; RNA polymerase-associated protein CTR9
E 113865909 protein LEO1 homolog isoform X1 K15177 LEO1; RNA polymerase-associated protein LEO1
E 113861220 protein RTF1 homolog K15178 RTF1; RNA polymerase-associated protein RTF1
E 113863276 protein RTF1 homolog K15178 RTF1; RNA polymerase-associated protein RTF1
E 113857608 protein RTF1 homolog K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
D Super elongation complex (SEC)
E 113854938 ELL-associated factor 2 K15186 EAF; ELL-associated factor
E 113871981 cyclin-T1-3-like K15188 CCNT; cyclin T
E 113853734 cyclin-T1-3-like K15188 CCNT; cyclin T
E 113857915 cyclin-T1-3-like isoform X1 K15188 CCNT; cyclin T
E 113870134 cyclin-T1-3-like K15188 CCNT; cyclin T
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
E 113871981 cyclin-T1-3-like K15188 CCNT; cyclin T
E 113853734 cyclin-T1-3-like K15188 CCNT; cyclin T
E 113857915 cyclin-T1-3-like isoform X1 K15188 CCNT; cyclin T
E 113870134 cyclin-T1-3-like K15188 CCNT; cyclin T
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
E 113855370 probable RNA methyltransferase At5g51130 isoform X1 K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-]
E 113861538 la-related protein 6B K15191 LARP7; La-related protein 7
E 113869024 la-related protein 6A isoform X1 K15191 LARP7; La-related protein 7
E 113871981 cyclin-T1-3-like K15188 CCNT; cyclin T
E 113853734 cyclin-T1-3-like K15188 CCNT; cyclin T
E 113857915 cyclin-T1-3-like isoform X1 K15188 CCNT; cyclin T
E 113870134 cyclin-T1-3-like K15188 CCNT; cyclin T
D DBIRD complex
D Others
E 113864617 TATA-binding protein-associated factor BTAF1 K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E 113845970 protein Dr1 homolog isoform X1 K21751 DR1; down-regulator of transcription 1
E 113858065 protein Dr1 homolog K21751 DR1; down-regulator of transcription 1
E 113864341 dr1-associated corepressor homolog isoform X1 K21752 DRAP1; Dr1-associated corepressor
E 113854556 dr1-associated corepressor homolog isoform X1 K21752 DRAP1; Dr1-associated corepressor
E 113845886 dr1-associated corepressor-like isoform X1 K21752 DRAP1; Dr1-associated corepressor
E 113858554 protein SPT2 homolog K15193 SPTY2D1; protein SPT2
E 113868937 protein SPT2-like isoform X1 K15193 SPTY2D1; protein SPT2
E 113859065 RNA polymerase II C-terminal domain phosphatase-like 1 K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16]
E 113863979 RNA polymerase II C-terminal domain phosphatase-like 2 K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16]
E 113853163 RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16]
E 113848378 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16]
E 113861297 RNA polymerase II C-terminal domain phosphatase-like 3 K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16]
E 113846758 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 113852116 probable C-terminal domain small phosphatase K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 113869002 protein IWS1 homolog 1-like isoform X1 K17498 SPN1; transcription factor SPN1
E 113868421 transcriptional elongation regulator MINIYO K20826 RPAP1; RNA polymerase II-associated protein 1
E 113872180 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1 K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E 113872776 RNA polymerase II-associated protein 3 isoform X1 K23002 RPAP3; RNA polymerase II-associated protein 3
E 113847098 GPN-loop GTPase QQT2 K24104 GPN; GPN-loop GTPase
E 113864836 GPN-loop GTPase QQT1 isoform X1 K24104 GPN; GPN-loop GTPase
E 113857290 GPN-loop GTPase 3 K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E 113857867 DNA-directed RNA polymerase III subunit 1 K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E 113853684 DNA-directed RNA polymerase III subunit 2 K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E 113850285 DNA-directed RNA polymerases I and III subunit RPAC1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 113861162 DNA-directed RNA polymerases I and III subunit RPAC2 K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E 113873400 DNA-directed RNA polymerase III subunit RPC3 K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E 113848187 uncharacterized protein LOC113848187 K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E 113865631 uncharacterized protein LOC113865631 isoform X1 K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E 113847075 DNA-directed RNA polymerase III subunit RPC5 isoform X1 K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E 113859898 DNA-directed RNA polymerase III subunit RPC6-like K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E 113863518 DNA-directed RNA polymerase III subunit RPC6 K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E 113852989 DNA-directed RNA polymerase III subunit RPC7-like K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E 113858416 DNA-directed RNA polymerase III subunit RPC8 K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E 113867915 DNA-directed RNA polymerase III subunit RPC9-like K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E 113863562 DNA-directed RNA polymerase III subunit RPC10-like K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E 113863225 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113853189 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113867861 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113856468 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113872892 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 113870880 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 113859000 DNA-directed RNA polymerases II and V subunit 8A-like isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 113855346 DNA-directed RNA polymerases II and V subunit 8A-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 113867998 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 113858662 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E 113854980 transcription factor IIIA isoform X1 K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E 113856371 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 113863835 transcription factor IIIB 90 kDa subunit isoform X1 K15196 BRF1; transcription factor IIIB 90 kDa subunit
E 113850928 plant-specific TFIIB-related protein PTF2-like K15196 BRF1; transcription factor IIIB 90 kDa subunit
E 113852654 plant-specific TFIIB-related protein PTF2-like K15196 BRF1; transcription factor IIIB 90 kDa subunit
E 113868459 uncharacterized protein LOC113868459 isoform X1 K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E 113867201 uncharacterized protein LOC113867201 isoform X1 K15199 GTF3C1; general transcription factor 3C polypeptide 1
E 113872072 uncharacterized protein LOC113872072 isoform X1 K15200 GTF3C2; general transcription factor 3C polypeptide 2
E 113864601 general transcription factor 3C polypeptide 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E 113868614 general transcription factor 3C polypeptide 5-like isoform X1 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 113856230 general transcription factor 3C polypeptide 6-like isoform X1 K15203 GTF3C6; general transcription factor 3C polypeptide 6
D TFIIIC, fungi type
E 113868614 general transcription factor 3C polypeptide 5-like isoform X1 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 113864601 general transcription factor 3C polypeptide 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E 113846409 uncharacterized protein LOC113846409 isoform X1 K15208 SNAPC1; snRNA-activating protein complex subunit 1
E 113847101 snRNA-activating protein complex subunit K15210 SNAPC3; snRNA-activating protein complex subunit 3
D Octamer transcription factors
D Others
E 113872311 repressor of RNA polymerase III transcription MAF1 homolog K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E 113871223 DNA-directed RNA polymerase I subunit 1 isoform X1 K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E 113864631 DNA-directed RNA polymerase I subunit 2 isoform X1 K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E 113850285 DNA-directed RNA polymerases I and III subunit RPAC1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 113861162 DNA-directed RNA polymerases I and III subunit RPAC2 K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E 113849887 DNA-directed RNA polymerase I subunit rpa49 K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E 113868025 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12
D Pol I, II, III common subunits
E 113863225 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113853189 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113867861 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113856468 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 113872892 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 113870880 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 113859000 DNA-directed RNA polymerases II and V subunit 8A-like isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 113855346 DNA-directed RNA polymerases II and V subunit 8A-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 113867998 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 113858662 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E 113856371 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C Other transcription-related factors
D UBF
E 113854561 high mobility group B protein 6-like K09273 UBTF; upstream-binding transcription factor
D Transcription initiation factors
E 113857813 RNA polymerase I-specific transcription initiation factor RRN3 K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
E 113868556 upstream activation factor subunit spp27-like K15223 UAF30; upstream activation factor subunit UAF30
D Transcription elongation factors
E 113859102 transcription elongation factor SPT4 homolog 2-like isoform X1 K15171 SUPT4H1; transcription elongation factor SPT4
E 113852576 transcription elongation factor SPT4 homolog 2 isoform X1 K15171 SUPT4H1; transcription elongation factor SPT4
E 113853028 putative transcription elongation factor SPT5 homolog 1 K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E 113863513 ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
E 113846305 ISWI chromatin-remodeling complex ATPase CHR11-like K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
D Transcription termination factors
D Others
#
AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E 113847446 uncharacterized protein LOC113847446 K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E 113847521 uncharacterized protein LOC113847521 K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E 113847686 uncharacterized protein LOC113847686 K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E 54634407 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E 113852952 uncharacterized protein LOC113852952 K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E 113856613 uncharacterized protein LOC113856613 K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E 113857538 uncharacterized protein LOC113857538 K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E 113857838 uncharacterized protein LOC113857838 K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E 54634526 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E 54634527 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E 54634528 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Sigma factors
E 113864896 RNA polymerase sigma factor sigA isoform X1 K03086 rpoD; RNA polymerase primary sigma factor
E 113874923 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X1 K03093 sigI; RNA polymerase sigma-I factor
E 113874993 RNA polymerase sigma factor sigC-like isoform X1 K03093 sigI; RNA polymerase sigma-I factor
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E 113860877 transcription initiation factor IIB-like K03124 TFIIB; transcription initiation factor TFIIB
E 113872199 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
E 113868971 plant-specific TFIIB-related protein 1 K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E 113847534 general transcription factor IIE subunit 1-like isoform X1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 113846166 general transcription factor IIE subunit 1-like K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024