+F Repair protein KO
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DNA Repair and Recombination Proteins - Aspergillus puulaauensis
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D APUU_11706A uncharacterized protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E APUU_80611S UNG1; uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E APUU_40809S uncharacterized protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E APUU_70280A OGG1; 8-oxoguanine glycosylase ogg1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E APUU_80252S NTG2; DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E APUU_80253S uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E APUU_40403A uncharacterized protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E APUU_31165S APN2; class II abasic (AP) endonuclease K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F APUU_20269A POL3; DNA-directed DNA polymerase delta K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F APUU_20257A uncharacterized protein K03504 POLD3; DNA polymerase delta subunit 3
F APUU_20852A uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F APUU_30461S POL2; DNA polymerase epsilon catalytic subunit K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F APUU_80615A DPB2; DNA-directed DNA polymerase epsilon, subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
E APUU_31177A FEN1; elongation of fatty acids protein 2 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E APUU_11159S uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E APUU_10923S uncharacterized protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E APUU_20435S HNT3; aprataxin-like protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E APUU_20728S uncharacterized protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E APUU_30383A uncharacterized protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F APUU_40490S uncharacterized protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F APUU_51120S uncharacterized protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F APUU_20641A uncharacterized protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F APUU_70423A RBX1; RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F APUU_11476A uncharacterized protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F APUU_60521A uncharacterized protein K15082 RAD7; DNA repair protein RAD7
F APUU_60522S RAD16; DNA repair protein rad16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F APUU_51019A RPB1; DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F APUU_31586A RPB2; DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F APUU_51233A RPB3; 45 kDa subunit of RNA polymerase II K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F APUU_30604S RPB4; RNA polymerase B K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F APUU_11253S RPB5; DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5) K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F APUU_71040S RPB6; DNA-directed RNA polymerases I II and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F APUU_21687S RPB7; DNA-directed RNA polymerase II subunit K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F APUU_11951A RPB8; DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F APUU_51079S RPB9; DNA-directed RNA polymerase II core subunit rpb9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F APUU_60518A RPB11; DNA-directed RNA polymerase II core subunit K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F APUU_60240A RPC10; DNA-directed RNA polymerase core subunit rpc10 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F APUU_70423A RBX1; RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F APUU_11476A uncharacterized protein K10610 DDB1; DNA damage-binding protein 1
F APUU_41406S uncharacterized protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F APUU_80733S uncharacterized protein K10841 ERCC6; DNA excision repair protein ERCC-6
F APUU_70453A uncharacterized protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E APUU_60660A SSL2; DNA repair helicase RAD25 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E APUU_11280S RAD15; DNA-dependent ATPase of the nucleotide excision repair factor 4 complex K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E APUU_40927S TFB1; RNA polymerase II transcription factor B subunit 1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E APUU_60555A uncharacterized protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E APUU_12014A TFB4; RNA polymerase II transcription factor B subunit 4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E APUU_80682S TFB2; RNA polymerase II transcription factor B 52 kDa subunit K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E APUU_30204S TFB5; TFIIH complex subunit tfb5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E APUU_60533S KIN28; TFIIH complex serine/threonine-protein kinase subunit kin28 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E APUU_20520A uncharacterized protein K06634 CCNH; cyclin H
E APUU_21454S TFB3; TFIIH/NER complex subunit K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E APUU_80628A RFA1; replication factor A protein 1 K07466 RFA1; replication factor A1
E APUU_11503S RFA2; replication factor A protein 2 K10739 RFA2; replication factor A2
D Other NER factors
E APUU_40613A uncharacterized protein K10847 XPA; DNA-repair protein complementing XP-A cells
E APUU_70502S RAD10; ssDNA endonuclease and repair protein rad10 K10849 ERCC1; DNA excision repair protein ERCC-1
E APUU_10452A uncharacterized protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E APUU_41374S RAD2; DNA repair protein rad2 K10846 ERCC5; DNA excision repair protein ERCC-5
E APUU_11159S uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E APUU_21680A uncharacterized protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E APUU_40418A CUL3; cullin-3 K03869 CUL3; cullin 3
E APUU_20857A uncharacterized protein K03872 ELOC; elongin-C
E APUU_51111S uncharacterized protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E APUU_30820S MSH2; MutS-like protein K08735 MSH2; DNA mismatch repair protein MSH2
E APUU_40714A MSH3; mismatch repair protein Msh3 K08736 MSH3; DNA mismatch repair protein MSH3
E APUU_21408S MSH6; DNA mismatch repair protein msh6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E APUU_12028A MLH1; DNA mismatch repair protein K08734 MLH1; DNA mismatch repair protein MLH1
E APUU_51285A uncharacterized protein K10858 PMS2; DNA mismatch repair protein PMS2
E APUU_70542S MLH3; DNA mismatch repair protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E APUU_20269A POL3; DNA-directed DNA polymerase delta K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E APUU_20257A uncharacterized protein K03504 POLD3; DNA polymerase delta subunit 3
E APUU_20852A uncharacterized protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E APUU_80628A RFA1; replication factor A protein 1 K07466 RFA1; replication factor A1
E APUU_11503S RFA2; replication factor A protein 2 K10739 RFA2; replication factor A2
D RFC (replication factor C)
E APUU_51176A uncharacterized protein K10754 RFC1; replication factor C subunit 1
E APUU_10769A RFC4; replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E APUU_30565A uncharacterized protein K10755 RFC2_4; replication factor C subunit 2/4
E APUU_30566A uncharacterized protein K10755 RFC2_4; replication factor C subunit 2/4
E APUU_41496S uncharacterized protein K10756 RFC3_5; replication factor C subunit 3/5
E APUU_51180A RFC5; replication factor C (RF-C) subunit K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E APUU_30491A EXO1; Rad2 nuclease K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E APUU_11159S uncharacterized protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E APUU_40730A uncharacterized protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E APUU_11532S MRE11; meiotic recombination K10865 MRE11; double-strand break repair protein MRE11
E APUU_60268S RAD50; DNA repair protein rad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E APUU_11532S MRE11; meiotic recombination K10865 MRE11; double-strand break repair protein MRE11
E APUU_60268S RAD50; DNA repair protein rad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E APUU_50497A RAD51; recombinase rad51 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E APUU_50497A RAD51; recombinase rad51 K04482 RAD51; DNA repair protein RAD51
E APUU_50733S uncharacterized protein K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E APUU_70591S RAD52; DNA repair protein rad52 K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E APUU_40870S RAD54; DNA-dependent ATPase protein rad54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E APUU_40871S uncharacterized protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E APUU_50956S RDH54; helicase K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E APUU_20973S SGS1; ATP-dependent DNA helicase sgs1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E APUU_20973S SGS1; ATP-dependent DNA helicase sgs1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E APUU_70759A TOP3; DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E APUU_30517S uncharacterized protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E APUU_80628A RFA1; replication factor A protein 1 K07466 RFA1; replication factor A1
E APUU_11503S RFA2; replication factor A protein 2 K10739 RFA2; replication factor A2
D Protein phosphatase 4
E APUU_80117A PSY2; platinum sensitivity protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E APUU_10546A SMC5; structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E APUU_31502S SMC6; structural maintenance of chromosomes protein 6 K22804 SMC6; structural maintenance of chromosomes protein 6
E APUU_50229S uncharacterized protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E APUU_71005S NSE4; nuclear protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E APUU_12191S uncharacterized protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E APUU_30396S MUS81; crossover junction endonuclease Mus81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E APUU_50491A SEM1; 26S proteasome complex subunit K10881 SHFM1; 26 proteasome complex subunit DSS1
E APUU_20636S uncharacterized protein K10991 SWI5; DNA repair protein Swi5/Sae3
E APUU_51017A uncharacterized protein K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E APUU_60648S SLX1; Slx4p interacting protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E APUU_30367S uncharacterized protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E APUU_21080S EAF3; Esa1p-associated factor K11339 MORF4L1; mortality factor 4-like protein 1
E APUU_40754S uncharacterized protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E APUU_11809A uncharacterized protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E APUU_11826A MPH1; 3'-5' DNA helicase K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E APUU_80113A KU70; ATP-dependent DNA helicase II subunit 1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E APUU_70757A KU80; ATP-dependent DNA helicase II subunit 2 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E APUU_11532S MRE11; meiotic recombination K10865 MRE11; double-strand break repair protein MRE11
E APUU_60268S RAD50; DNA repair protein rad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E APUU_41560S uncharacterized protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E APUU_12060A LIG4; DNA ligase (ATP) K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E APUU_50504A uncharacterized protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E APUU_51040A uncharacterized protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E APUU_20435S HNT3; aprataxin-like protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E APUU_11621S uncharacterized protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
E APUU_41590A uncharacterized protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E APUU_11472A uncharacterized protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E APUU_20973S SGS1; ATP-dependent DNA helicase sgs1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E APUU_70759A TOP3; DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E APUU_30517S uncharacterized protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E APUU_70285A uncharacterized protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E APUU_50497A RAD51; recombinase rad51 K04482 RAD51; DNA repair protein RAD51
E APUU_20815S TEL2; telomere binding protein K11137 TELO2; telomere length regulation protein
E APUU_12044S uncharacterized protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E APUU_20834A uncharacterized protein K23314 WRAP53; telomerase Cajal body protein 1
E APUU_20524S uncharacterized protein K24752 WDR70; WD repeat-containing protein 70
E APUU_40730A uncharacterized protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D APUU_70965A RAD30; DNA-directed DNA polymerase eta rad30 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D APUU_40986A uncharacterized protein K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D APUU_31420A uncharacterized protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D APUU_40459A REV1; deoxycytidyl transferase K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D APUU_31103A REV3; DNA polymerase zeta K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D APUU_10153A UBC2; ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D APUU_20258S RAD18; E3 ubiquitin-protein ligase rad18 K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D APUU_12124A RAD5; DNA helicase rad5 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D APUU_20575A uncharacterized protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D APUU_30783S uncharacterized protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D APUU_60230A MMS2; E2 ubiquitin-conjugating protein mms2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D APUU_10440S UBC13; ubiquitin-conjugating enzyme 13 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D APUU_40736A uncharacterized protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D APUU_10957S uncharacterized protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D APUU_10656S uncharacterized protein K10903 HUS1; HUS1 checkpoint protein
D APUU_60258S RAD1; ssDNA endodeoxyribonuclease K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D APUU_21839A RAD17; cell cycle checkpoint protein Rad17 K06662 HRAD17; cell cycle checkpoint protein
D APUU_10769A RFC4; replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D APUU_30565A uncharacterized protein K10755 RFC2_4; replication factor C subunit 2/4
D APUU_30566A uncharacterized protein K10755 RFC2_4; replication factor C subunit 2/4
D APUU_41496S uncharacterized protein K10756 RFC3_5; replication factor C subunit 3/5
D APUU_51180A RFC5; replication factor C (RF-C) subunit K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D APUU_60258S RAD1; ssDNA endodeoxyribonuclease K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D APUU_80674S TOF1; topoisomerase 1-associated factor 1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D APUU_80638S CSM3; chromosome segregation in meiosis-related protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D APUU_70775S uncharacterized protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D APUU_20815S TEL2; telomere binding protein K11137 TELO2; telomere length regulation protein
D APUU_11158A uncharacterized protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D APUU_41487S uncharacterized protein K23388 UBL4; ubiquitin-like protein 4
D APUU_10771A uncharacterized protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D APUU_80634A MEC1; serine/threonine-protein kinase M1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D APUU_12130A TEL1; serine/threonine-protein kinase Tel1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D APUU_40831A CHK1; Chk1 protein kinase K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D APUU_60530S uncharacterized protein K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D APUU_40415S CDC25; cell division cycle-related protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D APUU_41126S uncharacterized protein K06630 YWHAE; 14-3-3 protein epsilon
D APUU_70700S BMH1; 14-3-3 protein K06630 YWHAE; 14-3-3 protein epsilon
D APUU_10828A uncharacterized protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D APUU_30718S FKH2; transcription factor K24664 FKH; forkhead protein FKH
D APUU_30467A VPS4; vacuolar protein sorting-associated protein 4 K12196 VPS4; vacuolar protein-sorting-associated protein 4
B Other factors with a suspected DNA repair function
C DNA polymerases
D APUU_40414A POL5; DNA-directed DNA polymerase K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D APUU_11286A uncharacterized protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
C Helicases
D APUU_40587S uncharacterized protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D APUU_12223A uncharacterized protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D APUU_80548A CEF1; pre-mRNA-splicing factor Cef1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D APUU_60491A uncharacterized protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D APUU_50529S PRP46; pre-mRNA-splicing factor prp46 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D APUU_50538A uncharacterized protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D APUU_70566A RNR1; ribonucleotide-diphosphate reductase subunit rnr1 K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D APUU_12097A RNR2; ribonucleotide-diphosphate reductase (RNR), small subunit K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D APUU_11706A uncharacterized protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E APUU_80611S UNG1; uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E APUU_70576A MAG1; 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E APUU_60247A uncharacterized protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E APUU_80252S NTG2; DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E APUU_80253S uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E APUU_40600S uncharacterized protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E APUU_40600S uncharacterized protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D APUU_50538A uncharacterized protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024