+F Repair protein KO
#
DNA Repair and Recombination Proteins - Rhizobium rhizogenes K84
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Arad_0121 ada; methylated-DNA-(protein)-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Arad_0484 methylated-DNA-(protein)-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E Arad_3544 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Arad_2428 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Arad_1280 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Arad_4005 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Arad_4152 mutT; NTP pyrophosphohydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Arad_2556 hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Arad_0561 dut; deoxyuridine 5'triphosphate nucleotidohydrolase protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Arad_0121 ada; methylated-DNA-(protein)-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Arad_0484 methylated-DNA-(protein)-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Arad_4003 6-O-methylguanine-DNA methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Arad_0050 alkB; alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E Arad_3544 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Arad_0493 G:T/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E Arad_1510 DNA polymerase bacteriophage-type (uracil-DNA glycosylase) protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Arad_4183 alkA; DNA-3-methyladenine glycosidase II protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Arad_2428 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Arad_1280 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Arad_1042 tag; DNA-3-methyladenine glycosylase I protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Arad_0597 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Arad_4005 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Arad_2115 xthA2; exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Arad_4447 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E Arad_2163 recJ; single-stranded-DNA-specific exonuclease protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Arad_2980 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E Arad_0271 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Arad_2377 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E Arad_2754 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E Arad_1712 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E Arad_0838 uvrD1; ATP-dependent DNA helicase protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Arad_2955 uvrD2; DNA helicase II protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Arad_7839 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Arad_0271 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
E Arad_2980 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F Arad_1962 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F Arad_1963 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F Arad_2005 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F Arad_1586 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F Arad_2364 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Arad_0639 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E Arad_1095 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E Arad_0466 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E Arad_1202 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E Arad_1876 dnaEch1; DNA polymerase III alpha subunit protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Arad_0542 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E Arad_1688 DNA polymerase III K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E Arad_4937 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E Arad_2420 holB; DNA polymerase III delta prime subunit protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E Arad_7787 polymerase epsilon subunit protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E Arad_0004 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E Arad_0186 dnaX; DNA polymerase III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E Arad_2980 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Arad_0838 uvrD1; ATP-dependent DNA helicase protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Arad_2955 uvrD2; DNA helicase II protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Arad_7839 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Arad_2379 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Arad_2618 recA; recombinase A protein K03553 recA; recombination protein RecA
E Arad_3697 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Arad_3695 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Arad_3699 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E Arad_4315 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E Arad_2618 recA; recombinase A protein K03553 recA; recombination protein RecA
E Arad_1643 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E Arad_0209 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
E Arad_2361 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Arad_2163 recJ; single-stranded-DNA-specific exonuclease protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Arad_1597 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E Arad_0179 recR; DNA recombination protein K06187 recR; recombination protein RecR
E Arad_2981 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E Arad_3697 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Arad_3695 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Arad_3699 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E Arad_0034 addA; double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E Arad_0035 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E Arad_1399 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
E Arad_3647 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E Arad_9488 DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Arad_2382 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Arad_0014 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Arad_1891 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F Arad_1833 hrm; bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F Arad_14082 hns; HNS-type DNA binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Arad_2163 recJ; single-stranded-DNA-specific exonuclease protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Arad_1597 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F Arad_0179 recR; DNA recombination protein K06187 recR; recombination protein RecR
F Arad_2980 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F Arad_12446 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F Arad_12013 integration host factor alpha-subunit protein K04764 ihfA; integration host factor subunit alpha
F Arad_1773 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F Arad_0625 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F Arad_3122 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Arad_2377 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F Arad_2754 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Arad_1879 dinP; DNA damage inducible P protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D Arad_2618 recA; recombinase A protein K03553 recA; recombination protein RecA
D Arad_2240 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D Arad_2981 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Arad_4899 conserved hypothetical protein K14160 imuA; protein ImuA
D Arad_14034 conserved hypothetical protein K14160 imuA; protein ImuA
D Arad_4898 nucleotidyltransferase protein K14161 imuB; protein ImuB
D Arad_14035 conserved hypothetical protein K14161 imuB; protein ImuB
D Arad_14038 dnaE; DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Arad_4897 dnaEch2; DNA polymerase III alpha subunit protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Arad_2379 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D Arad_8896 recX; DNA repair regulator protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D Arad_0803 lhr; ATP-dependent RNA/DNA helicase protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D Arad_4152 mutT; NTP pyrophosphohydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Arad_2556 hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Arad_1531 hydrolase protein K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D Arad_0561 dut; deoxyuridine 5'triphosphate nucleotidohydrolase protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Arad_8250 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Arad_2051 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Arad_8249 nrdF; ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024