+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Anaerostipes rhamnosivorans

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D AR1Y2_2323 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C AR1Y2_2612 GTP-binding protein Era K03595 era; GTPase C AR1Y2_2116 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C AR1Y2_1794 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C AR1Y2_1583 Transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB C AR1Y2_3481 Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D AR1Y2_1386 Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D AR1Y2_0045 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D AR1Y2_2550 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D AR1Y2_2334 Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D AR1Y2_1511 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D AR1Y2_3549 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D AR1Y2_2229 rRNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D AR1Y2_2635 rRNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D AR1Y2_0088 rRNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D AR1Y2_1588 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D AR1Y2_2382 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D AR1Y2_2015 LSU m3Psi1915 methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D AR1Y2_1990 LSU m3Psi1915 methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D AR1Y2_3381 SAM dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D AR1Y2_2034 Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D AR1Y2_2549 Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D AR1Y2_1588 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D AR1Y2_0134 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D AR1Y2_0620 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D AR1Y2_1389 Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D AR1Y2_2286 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D AR1Y2_3284 tRNA pseudouridine synthase C, group TruC1 K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D AR1Y2_0944 Ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C AR1Y2_3127 Ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C AR1Y2_1364 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C AR1Y2_1279 Ribosomal protein S12p Asp88 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C AR1Y2_1510 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C AR1Y2_2323 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C AR1Y2_2120 Cytoplasmic axial filament protein CafA and Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C AR1Y2_1517 Putative Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] C AR1Y2_2383 Ribonuclease III family protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] B rRNA helicases C AR1Y2_3254 DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C AR1Y2_0624 ATP-dependent RNA helicase YxiN K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C AR1Y2_2612 GTP-binding protein Era K03595 era; GTPase C AR1Y2_2546 Ribosome small subunit-stimulated GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C AR1Y2_1373 GTP-binding protein EngA K03977 engA; GTPase C AR1Y2_2116 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-] C AR1Y2_1368 50S ribosomal subunit maturation GTPase RbgA K14540 rbgA; ribosome biogenesis GTPase A C AR1Y2_2429 GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C AR1Y2_0322 TsaC protein (YrdC-Sua5 domains) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C AR1Y2_1986 GTP pyrophosphokinase, (p)ppGpp synthetase I K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C AR1Y2_1790 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C AR1Y2_1795 hypothetical protein K09748 rimP; ribosome maturation factor RimP C AR1Y2_0003 hypothetical protein K14761 rlbA; ribosome-associated protein C AR1Y2_2112 Ribosomal silencing factor RsfA (former Iojap) K09710 ybeB; ribosome-associated protein C AR1Y2_1611 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly K07042 ybeY; probable rRNA maturation factor C AR1Y2_2115 RNA binding protein K07574 yhbY; RNA-binding protein C AR1Y2_3165 Ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor C AR1Y2_2638 GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase C AR1Y2_2326 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024