+D Transcription factors KO
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Transcription Factors - Arthrobacter sp. PAMC 25486
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D ART_4358 hypothetical protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D ART_2698 Transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
C DeoR family
D ART_4167 putative transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D ART_2518 transcriptional regulators of sugar metabolism, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D ART_0054 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_0792 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_1528 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_1534 putative transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_2563 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_2693 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_3096 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_3098 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_3362 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_3400 putative transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_4138 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ART_1533 Transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D ART_2475 Transcriptional regulator AglR, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D ART_3700 transcriptional regulator, GntR family K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D ART_0878 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D ART_3477 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D ART_3725 hypothetical protein K09017 rutR; TetR/AcrR family transcriptional regulator
D ART_0510 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D ART_1018 Transcriptional regulator, TetR family K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D ART_2404 Transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
C LuxR family
D ART_1562 hypothetical protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D ART_0149 putative transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D ART_1089 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D ART_2413 Transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D ART_2417 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D ART_1516 hypothetical protein K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D ART_2204 putative transcriptional regulator, MerR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D ART_2991 hypothetical protein K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D ART_3508 transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
C Fur family
D ART_1508 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D ART_2000 Transcriptional regulator, FUR family K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D ART_2242 Transcriptional regulator, FUR family K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D ART_1142 Transcriptional regulator, IclR family K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor
C CRP/FNR family
D ART_3052 transcriptional regulator, Crp/FNR family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D ART_1982 hypothetical protein K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D ART_3277 BadM/Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D ART_1217 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D ART_3356 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D ART_2594 putative transcriptional regulator, ArsR family K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
C XRE family
D ART_3159 hypothetical protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D ART_4291 hypothetical protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
D ART_1844 hypothetical protein K10947 K10947; PadR family transcriptional regulator
D ART_3172 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D ART_3290 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D ART_3777 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D ART_4180 hypothetical protein K10947 K10947; PadR family transcriptional regulator
C Other families
D ART_3716 Mn-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D ART_1555 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D ART_0228 Transcriptional regulator, MecI family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D ART_4092 Biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D ART_0753 hypothetical protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D ART_3109 AT-rich DNA-binding protein K01926 rex; redox-sensing transcriptional repressor
D ART_3023 putative transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D ART_2211 proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D ART_0462 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D ART_2046 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
C Others
D ART_1688 WhiB-like transcription regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D ART_3964 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D ART_2827 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D ART_2258 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D ART_2403 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D ART_2757 chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ART_3319 transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D ART_4350 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D ART_0902 heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D ART_0939 putative SorC family transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D ART_0957 uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D ART_3511 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D ART_0132 NrdR family transcripitonal regulator K07738 nrdR; transcriptional repressor NrdR
D ART_0106 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 18, 2025
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Classification taken and modified from TRANSFAC 7.0