+E Transcription factors KO
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Transcription Factors - Arthrobacter sp. ZXY-2
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D ARZXY2_4168 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D ARZXY2_2346 ada-alkA; DNA-3-methyladenine glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D ARZXY2_3003 iciA; Lysine export transcriptional regulatory protein LysG K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D ARZXY2_4181 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
C DeoR family
D ARZXY2_2571 agaR; alkaline phosphatase K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D ARZXY2_3614 fruR2; D-beta-D-heptose 1-phosphate adenosyltransferase K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D ARZXY2_2101 fruR2; DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D ARZXY2_2582 LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_365 lacI; LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_407 lacI; LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_2438 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_2861 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_572 lacI; LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_3355 lacI; LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_3372 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_3507 lacI; Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_4523 lacI; HTH-type transcriptional regulator MalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_4157 lacI; LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_4784 lacI; periplasmic binding s and sugar binding domain of the LacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_4765 lacI; glucose-resistance amylase regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_44 lacI; LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_58 lacI; LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ARZXY2_256 cytR; LacI family transcription regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D ARZXY2_3403 lacI; LacI family transcription regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D ARZXY2_3412 lacI; LacI family transcription regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D ARZXY2_3301 LacI family transcription regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D ARZXY2_3478 LacI family transcription regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D ARZXY2_1753 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D ARZXY2_957 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D ARZXY2_4286 pdhR; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ARZXY2_4029 pdhR; Exu regulon transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ARZXY2_406 pdhR; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ARZXY2_3664 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ARZXY2_3860 pdhR; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ARZXY2_4290 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ARZXY2_4462 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D ARZXY2_4255 TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D ARZXY2_3151 TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
C LuxR family
C MarR family
D ARZXY2_2765 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D ARZXY2_3325 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D ARZXY2_1165 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D ARZXY2_1398 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D ARZXY2_4446 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D ARZXY2_4771 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D ARZXY2_205 soxR; transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D ARZXY2_150 hspR; heat-shock protein K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D ARZXY2_2819 hypothetical protein K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
C Fur family
D ARZXY2_1059 sugar ABC transporter substrate-binding protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D ARZXY2_622 fur; Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D ARZXY2_324 iclR; IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D ARZXY2_180 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D ARZXY2_3574 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D ARZXY2_3584 pcaR; Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D ARZXY2_357 fnr; CrpFnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
D ARZXY2_3172 nsrR; Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D ARZXY2_1389 arsR; ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D ARZXY2_3716 arsR; Transcriptional repressor SmtB-like protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D ARZXY2_4423 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D ARZXY2_1391 ArsR family transcriptional regulator K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4]
D ARZXY2_3714 hypothetical protein K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4]
D ARZXY2_4361 hypothetical protein K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D ARZXY2_4377 ArsR family transcriptional regulator K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D ARZXY2_4386 ArsR family transcriptional regulator K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D ARZXY2_4375 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D ARZXY2_3270 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D ARZXY2_2390 hypothetical protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
D ARZXY2_4243 padR; PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D ARZXY2_2992 troR; DtxR family transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D ARZXY2_1040 troR; DtxR family transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D ARZXY2_4358 troR; DtxR family transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D ARZXY2_157 RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D ARZXY2_2225 CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D ARZXY2_2616 birA; biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D ARZXY2_2038 dynein regulation protein LC7 K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D ARZXY2_442 rex; REX family transcriptional regulator K01926 rex; redox-sensing transcriptional repressor
D ARZXY2_1363 hypothetical protein K27097 espR; ESX-1-secreted protein regulator
D ARZXY2_3823 transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D ARZXY2_3310 putA; 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D ARZXY2_1351 transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D ARZXY2_2707 transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D ARZXY2_1006 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D ARZXY2_1283 transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D ARZXY2_3981 metal-sensitive transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D ARZXY2_4261 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D ARZXY2_610 pucR; PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D ARZXY2_2793 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D ARZXY2_4224 PucR family transcriptional regulator K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D ARZXY2_3906 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ARZXY2_4471 parB; partitioning protein ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ARZXY2_4862 parB; parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ARZXY2_3132 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D ARZXY2_2350 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D ARZXY2_1728 hrcA; HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D ARZXY2_1925 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D ARZXY2_1972 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D ARZXY2_1713 transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D ARZXY2_1696 pyrR; uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D ARZXY2_3643 paiB; transcriptional regulator K07734 paiB; transcriptional regulator
D ARZXY2_1947 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D ARZXY2_2257 nrdR; NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D ARZXY2_2283 mraZ; cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0