+D GENES KO #

  KEGG Orthology (KO) - Candidatus Arthromitus sp. SFB-rat-Yit

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:asb00010] D RATSFB_0221 ROK family transcriptional repressor, with glucokinase domain protein K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0653 glk; glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0927 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RATSFB_0084 pfkA2; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RATSFB_1064 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RATSFB_1142 fbaA; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RATSFB_0132 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RATSFB_0130 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RATSFB_0131 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RATSFB_0133 gpmI; phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RATSFB_0134 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RATSFB_0085 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RATSFB_0439 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RATSFB_0460 nifJ; pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D RATSFB_1179 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RATSFB_1178 thiamine pyrophosphate protein domain protein TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RATSFB_1172 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RATSFB_0782 phosphoglucomutase/phosphomannomutase alpha/beta/subunit K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RATSFB_0852 glycoside hydrolase, family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D RATSFB_0849 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] C 00020 Citrate cycle (TCA cycle) [PATH:asb00020] D RATSFB_1179 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RATSFB_1178 thiamine pyrophosphate protein domain protein TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RATSFB_1177 porG; pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D RATSFB_1180 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D RATSFB_0460 nifJ; pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:asb00030] D RATSFB_0927 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RATSFB_0311 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RATSFB_0310 gnd; 6-phosphogluconate dehydrogenase-like protein K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RATSFB_1300 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RATSFB_1301 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RATSFB_0492 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D RATSFB_0559 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D RATSFB_1259 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D RATSFB_0968 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D RATSFB_0782 phosphoglucomutase/phosphomannomutase alpha/beta/subunit K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RATSFB_1287 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RATSFB_1142 fbaA; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RATSFB_0084 pfkA2; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RATSFB_1064 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:asb00040] D RATSFB_0057 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RATSFB_0853 sgbU; putative L-xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D RATSFB_0854 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D RATSFB_0367 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] C 00051 Fructose and mannose metabolism [PATH:asb00051] D RATSFB_0204 manA; mannose-6-phosphate isomerase, type 1 K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D RATSFB_0055 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RATSFB_0257 manC; putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RATSFB_0367 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D RATSFB_0084 pfkA2; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RATSFB_1064 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RATSFB_0151 mtlD; D-mannitol 1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D RATSFB_0547 putative 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D RATSFB_1142 fbaA; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RATSFB_0132 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RATSFB_0492 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D RATSFB_0546 PTS system, IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RATSFB_0275 putative PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D RATSFB_0276 PTS family mannose/fructose/sorbose porter component IIC K02795 manY; mannose PTS system EIIC component D RATSFB_0277 manZ; PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component D RATSFB_0149 PTS system mannitol-specific transporter subunit IIC K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] C 00052 Galactose metabolism [PATH:asb00052] D RATSFB_0282 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RATSFB_0057 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RATSFB_0782 phosphoglucomutase/phosphomannomutase alpha/beta/subunit K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RATSFB_0221 ROK family transcriptional repressor, with glucokinase domain protein K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0653 glk; glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0123 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RATSFB_0084 pfkA2; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RATSFB_1064 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RATSFB_0663 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:asb00053] D RATSFB_0592 ulaC; ascorbate-specific phosphotransferase enzyme IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D RATSFB_0858 PTS system, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D RATSFB_0594 PTS system, lactose/cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D RATSFB_0856 PTS system, lactose/cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D RATSFB_0593 ulaA; ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component D RATSFB_0857 putative sugar-specific permease, SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component D RATSFB_0859 ulaG; putative L-ascorbate-6-phosphate lactonase UlaG K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-] D RATSFB_0853 sgbU; putative L-xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D RATSFB_0854 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00500 Starch and sucrose metabolism [PATH:asb00500] D RATSFB_0663 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RATSFB_0057 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RATSFB_0821 licA; lichenan-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D RATSFB_0851 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D RATSFB_0850 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D RATSFB_0864 PTS lactose/cellobiose IIC component K02761 celB; cellobiose PTS system EIIC component D RATSFB_0852 glycoside hydrolase, family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D RATSFB_0849 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D RATSFB_0782 phosphoglucomutase/phosphomannomutase alpha/beta/subunit K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RATSFB_0221 ROK family transcriptional repressor, with glucokinase domain protein K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0653 glk; glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0927 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:asb00520] D RATSFB_0461 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D RATSFB_1099 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D RATSFB_0167 nagB; glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D RATSFB_0884 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RATSFB_1176 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D RATSFB_1288 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D RATSFB_1104 murA2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RATSFB_1324 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RATSFB_0077 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RATSFB_0207 nanE; N-acylglucosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D RATSFB_0218 nanE; N-acetylmannosamine-6-phosphate epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D RATSFB_0219 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3] D RATSFB_1105 WecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D RATSFB_0221 ROK family transcriptional repressor, with glucokinase domain protein K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0653 glk; glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0782 phosphoglucomutase/phosphomannomutase alpha/beta/subunit K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RATSFB_0057 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RATSFB_0282 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RATSFB_0275 putative PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D RATSFB_0276 PTS family mannose/fructose/sorbose porter component IIC K02795 manY; mannose PTS system EIIC component D RATSFB_0277 manZ; PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component D RATSFB_0927 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RATSFB_0204 manA; mannose-6-phosphate isomerase, type 1 K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D RATSFB_0055 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RATSFB_0257 manC; putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] C 00620 Pyruvate metabolism [PATH:asb00620] D RATSFB_0460 nifJ; pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D RATSFB_1179 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RATSFB_1178 thiamine pyrophosphate protein domain protein TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RATSFB_1172 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RATSFB_0521 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RATSFB_0520 pta; phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D RATSFB_0085 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RATSFB_0704 accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D RATSFB_0708 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D RATSFB_0706 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D RATSFB_0705 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RATSFB_0390 ldhD; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D RATSFB_0544 2,5-didehydrogluconate reductase K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] D RATSFB_0716 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D RATSFB_1019 pycB; pyruvate carboxylase subunit B K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D RATSFB_1016 oadB; Na+ transporting oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RATSFB_0439 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:asb00630] D RATSFB_1001 catalase K03781 katE; catalase [EC:1.11.1.6] D RATSFB_0888 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D RATSFB_1307 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RATSFB_0713 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RATSFB_0312 polyketide cyclase K07130 kynB; arylformamidase [EC:3.5.1.9] C 00640 Propanoate metabolism [PATH:asb00640] D RATSFB_0521 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RATSFB_0520 pta; phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D RATSFB_0704 accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D RATSFB_0708 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D RATSFB_0706 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D RATSFB_0705 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D RATSFB_0544 2,5-didehydrogluconate reductase K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] C 00650 Butanoate metabolism [PATH:asb00650] D RATSFB_1172 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RATSFB_1016 oadB; Na+ transporting oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RATSFB_1017 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D RATSFB_1018 sodium pump decarboxylase, gamma subunit subfamily K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D RATSFB_0460 nifJ; pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D RATSFB_1179 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RATSFB_1178 thiamine pyrophosphate protein domain protein TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism [PATH:asb00562] D RATSFB_0246 phospholipase C zinc-binding K01114 plc; phospholipase C [EC:3.1.4.3] D RATSFB_0638 phosphatidylinositol-specific phospholipase C, X domain containing protein K01771 plc; 1-phosphatidylinositol phosphodiesterase [EC:4.6.1.13] D RATSFB_0132 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:asb00190] D RATSFB_0253 atpA; V-type ATP synthase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D RATSFB_0254 atpB; V-type ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D RATSFB_0251 H+transporting two-sector ATPase C (AC39) subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D RATSFB_0255 atpD; V-type sodium ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D RATSFB_0250 atpC; H+transporting two-sector ATPase E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D RATSFB_0252 atpF; ATP synthase, subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D RATSFB_0247 ntpG; V-type sodium ATP synthase subunit G K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D RATSFB_0248 V-type ATPase 116 kDa subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D RATSFB_0249 H+transporting two-sector ATPase C subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D RATSFB_1013 ppaX; pyrophosphatase PpaX K06019 ppaX; pyrophosphatase PpaX [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:asb00710] D RATSFB_0131 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RATSFB_0130 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RATSFB_1142 fbaA; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RATSFB_1300 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RATSFB_1301 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RATSFB_0492 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D RATSFB_0132 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RATSFB_0439 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00720 Other carbon fixation pathways [PATH:asb00720] D RATSFB_0460 nifJ; pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D RATSFB_0439 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RATSFB_1179 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RATSFB_1178 thiamine pyrophosphate protein domain protein TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RATSFB_1177 porG; pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D RATSFB_1180 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D RATSFB_0704 accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D RATSFB_0708 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D RATSFB_0706 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D RATSFB_0705 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D RATSFB_0738 folD; methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D RATSFB_0520 pta; phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D RATSFB_0521 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:asb00680] D RATSFB_0713 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RATSFB_0888 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D RATSFB_0134 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RATSFB_1142 fbaA; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RATSFB_0084 pfkA2; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RATSFB_1064 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RATSFB_0521 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RATSFB_0520 pta; phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D RATSFB_0133 gpmI; phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] C 00910 Nitrogen metabolism [PATH:asb00910] D RATSFB_1062 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D RATSFB_1307 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] C 00920 Sulfur metabolism D RATSFB_0615 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:asb00061] D RATSFB_0704 accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D RATSFB_0708 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D RATSFB_0706 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D RATSFB_0705 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D RATSFB_0525 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D RATSFB_0711 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RATSFB_0712 fabH; 3-oxoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RATSFB_0709 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RATSFB_0161 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RATSFB_0710 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RATSFB_0707 fabZ; hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RATSFB_1127 fabI; enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:asb00071] D RATSFB_1172 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis [PATH:asb00074] D RATSFB_0062 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D RATSFB_0525 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D RATSFB_0711 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:asb00561] D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RATSFB_0524 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D RATSFB_1041 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RATSFB_1136 plsC; phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RATSFB_0434 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D RATSFB_1116 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] C 00564 Glycerophospholipid metabolism [PATH:asb00564] D RATSFB_0668 gpsA; glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D RATSFB_1041 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RATSFB_1136 plsC; phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RATSFB_0434 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D RATSFB_0246 phospholipase C zinc-binding K01114 plc; phospholipase C [EC:3.1.4.3] D RATSFB_0605 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D RATSFB_0596 cls; putative cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D RATSFB_0122 cls; cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D RATSFB_0625 pgsA; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism D RATSFB_0246 phospholipase C zinc-binding K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism D RATSFB_0123 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:asb00230] D RATSFB_0970 NUDIX family hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D RATSFB_0968 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D RATSFB_0782 phosphoglucomutase/phosphomannomutase alpha/beta/subunit K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RATSFB_1287 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RATSFB_0960 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RATSFB_0718 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D RATSFB_0293 pnp; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D RATSFB_0681 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D RATSFB_1270 hpt_2; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D RATSFB_0533 guaC; GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RATSFB_0309 yggV; putative deoxyribonucleotide triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D RATSFB_0535 guaA; GMP synthase (glutamine-hydrolyzing), C-terminal domain protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RATSFB_0494 gpk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D RATSFB_1036 nrdJ; vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RATSFB_0717 spoT; RelA/SpoT protein, (p)ppGpp synthetase/pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D RATSFB_1166 RelA/spoT family protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D RATSFB_0288 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D RATSFB_0962 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RATSFB_1077 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D RATSFB_0543 5'-nucleotidase domain protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D RATSFB_1204 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:asb00240] D RATSFB_0602 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D RATSFB_1115 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D RATSFB_1107 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D RATSFB_0646 pyrR; uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D RATSFB_0543 5'-nucleotidase domain protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D RATSFB_0967 pdp; pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D RATSFB_0435 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D RATSFB_1079 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RATSFB_1036 nrdJ; vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RATSFB_1252 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D RATSFB_0936 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RATSFB_1112 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D RATSFB_0366 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:asb00250] D RATSFB_0644 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RATSFB_0082 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RATSFB_0962 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RATSFB_0960 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RATSFB_1062 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D RATSFB_1307 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RATSFB_0884 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] C 00260 Glycine, serine and threonine metabolism [PATH:asb00260] D RATSFB_0621 aspartate kinase I K00928 lysC; aspartate kinase [EC:2.7.2.4] D RATSFB_0093 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RATSFB_0398 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RATSFB_0713 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RATSFB_0888 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D RATSFB_0133 gpmI; phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] C 00270 Cysteine and methionine metabolism [PATH:asb00270] D RATSFB_0879 putative aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RATSFB_1100 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RATSFB_0172 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D RATSFB_0171 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D RATSFB_0038 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D RATSFB_0681 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D RATSFB_0621 aspartate kinase I K00928 lysC; aspartate kinase [EC:2.7.2.4] D RATSFB_0093 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RATSFB_0398 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RATSFB_0451 ilvE1; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RATSFB_0465 ilvE1; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RATSFB_0644 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00280 Valine, leucine and isoleucine degradation [PATH:asb00280] D RATSFB_0451 ilvE1; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RATSFB_0465 ilvE1; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:asb00290] D RATSFB_0451 ilvE1; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RATSFB_0465 ilvE1; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00300 Lysine biosynthesis [PATH:asb00300] D RATSFB_0621 aspartate kinase I K00928 lysC; aspartate kinase [EC:2.7.2.4] D RATSFB_0093 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RATSFB_0398 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RATSFB_0397 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RATSFB_0396 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D RATSFB_0900 dapH; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D RATSFB_0160 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RATSFB_0094 lisA; diaminopimelate decarboxylase, lisA K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RATSFB_0759 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RATSFB_0758 UDP-N-acetylmuramoylalanyl-D-glutamyl-2 K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:asb00220] D RATSFB_1060 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D RATSFB_1307 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RATSFB_1062 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D RATSFB_0644 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:asb00330] D RATSFB_1079 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RATSFB_0784 Orn/Lys/Arg decarboxylase major region K01585 speA; arginine decarboxylase [EC:4.1.1.19] D RATSFB_0171 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D RATSFB_0172 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RATSFB_1060 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D RATSFB_0644 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:asb00350] D RATSFB_0644 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RATSFB_1172 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00360 Phenylalanine metabolism D RATSFB_0644 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00380 Tryptophan metabolism [PATH:asb00380] D RATSFB_0312 polyketide cyclase K07130 kynB; arylformamidase [EC:3.5.1.9] D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RATSFB_1001 catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:asb00400] D RATSFB_1035 aroA; phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RATSFB_1032 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D RATSFB_0136 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D RATSFB_0135 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D RATSFB_0137 chorismate mutase K00891 aroK; shikimate kinase [EC:2.7.1.71] D RATSFB_1034 AroA2; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D RATSFB_1033 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D RATSFB_0644 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00430 Taurine and hypotaurine metabolism [PATH:asb00430] D RATSFB_0520 pta; phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D RATSFB_0521 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:asb00450] D RATSFB_0879 putative aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RATSFB_1022 sufS; cysteine desulfurase, SufS family K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D RATSFB_1130 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D RATSFB_0345 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D RATSFB_0346 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D RATSFB_1315 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism D RATSFB_0713 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:asb00470] D RATSFB_0064 alr2; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RATSFB_0158 alr; alanine racemase family protein K01775 alr; alanine racemase [EC:5.1.1.1] D RATSFB_1134 ddl2; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RATSFB_1306 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D RATSFB_1256 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RATSFB_0160 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RATSFB_0094 lisA; diaminopimelate decarboxylase, lisA K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:asb00480] D RATSFB_1293 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RATSFB_0194 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D RATSFB_0310 gnd; 6-phosphogluconate dehydrogenase-like protein K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RATSFB_0311 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RATSFB_0171 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:asb00511] D RATSFB_0123 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RATSFB_0657 alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis [PATH:asb00542] D RATSFB_1106 wecA; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:asb00541] D RATSFB_0057 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RATSFB_0282 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RATSFB_1076 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RATSFB_0204 manA; mannose-6-phosphate isomerase, type 1 K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D RATSFB_0055 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RATSFB_0257 manC; putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RATSFB_1288 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D RATSFB_1105 WecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:asb00550] D RATSFB_1104 murA2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RATSFB_1324 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RATSFB_0077 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RATSFB_1291 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RATSFB_1256 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RATSFB_0759 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RATSFB_1134 ddl2; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RATSFB_0758 UDP-N-acetylmuramoylalanyl-D-glutamyl-2 K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RATSFB_0604 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RATSFB_1065 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RATSFB_0757 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RATSFB_0412 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RATSFB_0423 transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D RATSFB_0735 mrcB; membrane carboxypeptidase MrcB K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RATSFB_0330 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RATSFB_0760 spoVD; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D RATSFB_0075 peptidoglycan glycosyltransferase K05364 pbpA; penicillin-binding protein A D RATSFB_0343 dac; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RATSFB_0966 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RATSFB_0487 dac; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RATSFB_1068 murE; UDP-N-acetylmuramyl tripeptide synthetase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D RATSFB_1069 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:asb00552] D RATSFB_1065 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RATSFB_1106 wecA; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D RATSFB_0780 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D RATSFB_0044 cell envelope-related function transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D RATSFB_0050 lytR; LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D RATSFB_1116 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium D RATSFB_1106 wecA; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00543 Exopolysaccharide biosynthesis [PATH:asb00543] D RATSFB_1106 wecA; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D RATSFB_0026 algI; alginate O-acetylation protein K19294 algI; alginate O-acetyltransferase complex protein AlgI D RATSFB_0198 putative acyltransferase 3 K13663 gumF; acyltransferase [EC:2.3.1.-] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:asb00730] D RATSFB_0702 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RATSFB_0773 thiH; thiamine biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D RATSFB_0401 1-deoxyxylulose-5-phosphate synthase homolog K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D RATSFB_0504 putative GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RATSFB_0998 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RATSFB_0505 thi80; thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D RATSFB_1204 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:asb00740] D RATSFB_0617 ribF; bifunctional riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D RATSFB_0970 NUDIX family hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism D RATSFB_0665 pdxS; pyridoxal phosphate synthase yaaD subunit K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D RATSFB_0664 pdxT; GMP synthase (glutamine-hydrolyzing) K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:asb00760] D RATSFB_0449 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D RATSFB_0293 pnp; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D RATSFB_0340 nadD; nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D RATSFB_0156 nadE; NAD synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D RATSFB_0553 ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:asb00770] D RATSFB_0515 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D RATSFB_0202 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D RATSFB_0062 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D RATSFB_0451 ilvE1; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RATSFB_0465 ilvE1; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:asb00780] D RATSFB_0709 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RATSFB_0161 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RATSFB_0710 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RATSFB_0707 fabZ; hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RATSFB_1127 fabI; enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D RATSFB_0774 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D RATSFB_1054 BirA; biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:asb00790] D RATSFB_0365 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] C 00670 One carbon pool by folate [PATH:asb00670] D RATSFB_0365 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D RATSFB_0738 folD; methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D RATSFB_0713 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RATSFB_0498 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RATSFB_0366 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:asb00860] D RATSFB_1043 gltX; glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RATSFB_0899 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D RATSFB_0842 pyridoxamine 5'-phosphate oxidase-related FMN-binding K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:asb00900] D RATSFB_0401 1-deoxyxylulose-5-phosphate synthase homolog K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D RATSFB_0400 dxr2; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D RATSFB_1245 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D RATSFB_1121 ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D RATSFB_0097 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D RATSFB_0607 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D RATSFB_0551 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RATSFB_0604 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D RATSFB_1300 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RATSFB_1301 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis D RATSFB_1076 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D RATSFB_1076 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D RATSFB_0905 bla; putative beta-lactamase class A-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:asb00261] D RATSFB_0621 aspartate kinase I K00928 lysC; aspartate kinase [EC:2.7.2.4] D RATSFB_0093 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RATSFB_0398 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RATSFB_0397 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RATSFB_0396 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:asb00521] D RATSFB_0221 ROK family transcriptional repressor, with glucokinase domain protein K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0653 glk; glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0782 phosphoglucomutase/phosphomannomutase alpha/beta/subunit K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RATSFB_1076 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D RATSFB_0221 ROK family transcriptional repressor, with glucokinase domain protein K25026 glk; glucokinase [EC:2.7.1.2] D RATSFB_0653 glk; glucokinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis D RATSFB_1076 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis D RATSFB_0644 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D RATSFB_0711 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RATSFB_0161 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RATSFB_0710 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RATSFB_1127 fabI; enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D RATSFB_0525 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:asb00999] D RATSFB_1100 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RATSFB_0135 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D RATSFB_1016 oadB; Na+ transporting oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RATSFB_1017 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D RATSFB_1018 sodium pump decarboxylase, gamma subunit subfamily K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:asb00625] D RATSFB_1172 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D RATSFB_0165 ywdH; aldehyde dehydrogenase ywdH K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:asb00626] D RATSFB_1172 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:asb03020] D RATSFB_1232 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RATSFB_1231 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RATSFB_1197 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RATSFB_0495 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:asb03010] D RATSFB_0193 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D RATSFB_0600 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RATSFB_1219 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RATSFB_1198 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RATSFB_1208 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RATSFB_1333 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D RATSFB_1229 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RATSFB_1211 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RATSFB_1190 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RATSFB_1226 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RATSFB_1199 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RATSFB_1230 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RATSFB_1200 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RATSFB_1212 rpsZ; 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14 D RATSFB_0618 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RATSFB_0565 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D RATSFB_1216 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RATSFB_1331 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RATSFB_1221 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RATSFB_0802 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D RATSFB_0785 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D RATSFB_1235 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RATSFB_1222 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RATSFB_1225 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RATSFB_1224 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D RATSFB_1213 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RATSFB_1210 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RATSFB_1233 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D RATSFB_1316 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D RATSFB_1234 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RATSFB_1236 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RATSFB_1191 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RATSFB_1215 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RATSFB_1206 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RATSFB_1218 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D RATSFB_1196 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D RATSFB_1209 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RATSFB_0568 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D RATSFB_0384 rplT1; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D RATSFB_0336 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D RATSFB_1220 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RATSFB_1223 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RATSFB_1214 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RATSFB_0783 rplY_1; 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D RATSFB_0338 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D RATSFB_0511 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RATSFB_1217 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RATSFB_1207 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RATSFB_1113 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RATSFB_0523 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RATSFB_1346 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D RATSFB_0383 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D RATSFB_1201 rpl36; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D RATSFB_16srRNA01 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA03 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA02 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA04 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA05 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_23srRNA01 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA02 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA03 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA05 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA04 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_5srRNA01 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA03 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA05 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA06 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA04 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA02 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:asb00970] D RATSFB_tRNA02 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RATSFB_tRNA06 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RATSFB_tRNA05 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RATSFB_tRNA21 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RATSFB_tRNA27 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RATSFB_tRNA10 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RATSFB_tRNA11 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RATSFB_tRNA25 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RATSFB_tRNA38 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RATSFB_tRNA23 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D RATSFB_tRNA16 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RATSFB_tRNA36 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RATSFB_tRNA39 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RATSFB_tRNA19 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RATSFB_tRNA14 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RATSFB_tRNA20 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RATSFB_tRNA15 tRNA-His K14226 tRNA-His; tRNA His D RATSFB_tRNA35 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RATSFB_tRNA09 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RATSFB_tRNA12 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RATSFB_tRNA18 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RATSFB_tRNA08 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RATSFB_tRNA17 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RATSFB_tRNA33 tRNA-Met K14230 tRNA-Met; tRNA Met D RATSFB_tRNA34 tRNA-Met K14230 tRNA-Met; tRNA Met D RATSFB_tRNA01 tRNA-Met K14230 tRNA-Met; tRNA Met D RATSFB_tRNA22 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RATSFB_tRNA24 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RATSFB_tRNA13 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RATSFB_tRNA04 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RATSFB_tRNA07 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RATSFB_tRNA03 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RATSFB_tRNA29 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RATSFB_tRNA32 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RATSFB_tRNA28 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D RATSFB_tRNA31 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RATSFB_tRNA37 tRNA-Val K14237 tRNA-Val; tRNA Val D RATSFB_tRNA30 tRNA-Val K14237 tRNA-Val; tRNA Val D RATSFB_tRNA26 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D RATSFB_1043 gltX; glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RATSFB_0176 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D RATSFB_0700 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RATSFB_0714 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RATSFB_1289 asnC; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RATSFB_1257 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RATSFB_0352 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RATSFB_0008 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RATSFB_0346 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D RATSFB_1244 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RATSFB_1315 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RATSFB_0498 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RATSFB_0906 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RATSFB_1159 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RATSFB_0184 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RATSFB_1266 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RATSFB_1052 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RATSFB_0029 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RATSFB_0715 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RATSFB_0388 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RATSFB_0389 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RATSFB_1170 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RATSFB_1162 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:asb03060] D RATSFB_1205 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D RATSFB_1238 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RATSFB_0138 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RATSFB_0721 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D RATSFB_0720 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RATSFB_0725 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RATSFB_1343 oxaA; putative membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D RATSFB_1094 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RATSFB_0564 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RATSFB_0562 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RATSFB_0256 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RATSFB_0089 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RATSFB_1082 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:asb04122] D RATSFB_0702 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RATSFB_0701 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] C 03050 Proteasome C 03018 RNA degradation [PATH:asb03018] D RATSFB_0134 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RATSFB_0619 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RATSFB_0139 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D RATSFB_1114 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RATSFB_0627 phosphodiesterase K18682 rny; ribonucrease Y [EC:3.1.-.-] D RATSFB_0696 beta-lactamase domain-containing protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D RATSFB_0084 pfkA2; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RATSFB_0795 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D RATSFB_0354 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] B B 09124 Replication and repair C 03030 DNA replication [PATH:asb03030] D RATSFB_1061 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RATSFB_0083 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RATSFB_0608 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D RATSFB_0033 dnaX; putative DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RATSFB_1251 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RATSFB_0803 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RATSFB_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RATSFB_1319 putative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RATSFB_0441 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RATSFB_0059 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein D RATSFB_1332 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RATSFB_0570 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RATSFB_0920 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:asb03410] D RATSFB_0262 ogg; 8-oxoguanine-DNA-glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D RATSFB_1135 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RATSFB_0157 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D RATSFB_0021 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RATSFB_0528 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RATSFB_0410 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RATSFB_0920 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:asb03420] D RATSFB_0073 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D RATSFB_0072 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D RATSFB_0076 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D RATSFB_0090 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RATSFB_0450 helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RATSFB_0921 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RATSFB_0920 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:asb03430] D RATSFB_0634 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RATSFB_0429 msh1; DNA mismatch repair MutS-like protein K07456 mutS2; DNA mismatch repair protein MutS2 D RATSFB_0633 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D RATSFB_0090 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RATSFB_0450 helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RATSFB_0921 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RATSFB_0549 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RATSFB_0550 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RATSFB_0410 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RATSFB_0059 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein D RATSFB_1332 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RATSFB_0083 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RATSFB_0608 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D RATSFB_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RATSFB_0033 dnaX; putative DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RATSFB_0803 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RATSFB_1251 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RATSFB_1061 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RATSFB_0920 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:asb03440] D RATSFB_0410 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RATSFB_0059 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein D RATSFB_1332 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RATSFB_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D RATSFB_0437 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) D RATSFB_0035 recR; recombination protein recr K06187 recR; recombination protein RecR D RATSFB_0626 recA; recombinase A K03553 recA; recombination protein RecA D RATSFB_0729 RuvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RATSFB_0728 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RATSFB_0513 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RATSFB_1098 recD; RecD/TraA family helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D RATSFB_0083 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RATSFB_0608 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D RATSFB_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RATSFB_0033 dnaX; putative DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RATSFB_0803 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RATSFB_1251 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RATSFB_1061 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RATSFB_0496 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:asb02010] D RATSFB_0654 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RATSFB_0656 extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D RATSFB_0659 ABC transporter K17319 lplB; putative aldouronate transport system permease protein D RATSFB_0658 sugar transport system K17320 lplC; putative aldouronate transport system permease protein D RATSFB_0125 lipoprotein, bmp family K07335 bmpA; basic membrane protein A and related proteins D RATSFB_0127 branched chain amino acid ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D RATSFB_0128 rbsC; ribose transport system permease protein rbsC K23536 nupC; general nucleoside transport system permease protein D RATSFB_0126 putative sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D RATSFB_1264 ribose ABC transporter, ribose-binding protein K10439 rbsB; ribose transport system substrate-binding protein D RATSFB_1262 ribose ABC transporter K10440 rbsC; ribose transport system permease protein D RATSFB_1261 ribose ABC transporter K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RATSFB_1260 rbsD; D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D RATSFB_0678 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D RATSFB_0677 pstC; phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D RATSFB_0676 pstA; phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein D RATSFB_0675 pstB; phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RATSFB_0538 phnD; phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D RATSFB_0540 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D RATSFB_0542 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D RATSFB_0539 phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D RATSFB_0120 amino acid ABC transporter ATP-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D RATSFB_0119 glnP; glutamine ABC transporter, permease/substrate-binding protein K17077 artQ; arginine/lysine/histidine transport system permease protein D RATSFB_0118 artP; arginine ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D RATSFB_1302 putative TonB-dependent receptor K02073 metQ; D-methionine transport system substrate-binding protein D RATSFB_0919 putative extracellular solute-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D RATSFB_0226 manganese/zinc/iron chelate ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D RATSFB_0224 zurM; hydrophobic membrane protein ZurM K09816 znuB; zinc transport system permease protein D RATSFB_0225 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RATSFB_1003 bioY; BioY family protein K03523 bioY; biotin transport system substrate-specific component D RATSFB_1312 putative cobalt ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein D RATSFB_1193 cobalt ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein D RATSFB_1195 cbiO; cobalt transporter ATP-binding subunit K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RATSFB_1194 cbiO1; cobalt import ATP-binding protein CbiO 1 K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RATSFB_0941 putative ABC transporter, permease protein K19084 braE; bacitracin transport system permease protein D RATSFB_0942 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein D RATSFB_0069 FtsX; putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RATSFB_0068 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RATSFB_0770 ABC-type multidrug/protein/lipid transport system, ATPase component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D RATSFB_0769 ABC transporter, ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump C 02060 Phosphotransferase system (PTS) [PATH:asb02060] D RATSFB_1187 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D RATSFB_0629 hpr; phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D RATSFB_0149 PTS system mannitol-specific transporter subunit IIC K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D RATSFB_0821 licA; lichenan-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D RATSFB_0851 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D RATSFB_0850 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D RATSFB_0864 PTS lactose/cellobiose IIC component K02761 celB; cellobiose PTS system EIIC component D RATSFB_0275 putative PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D RATSFB_0276 PTS family mannose/fructose/sorbose porter component IIC K02795 manY; mannose PTS system EIIC component D RATSFB_0277 manZ; PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component D RATSFB_0592 ulaC; ascorbate-specific phosphotransferase enzyme IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D RATSFB_0858 PTS system, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D RATSFB_0594 PTS system, lactose/cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D RATSFB_0856 PTS system, lactose/cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D RATSFB_0593 ulaA; ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component D RATSFB_0857 putative sugar-specific permease, SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component D RATSFB_0546 PTS system, IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RATSFB_0547 putative 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:asb03070] D RATSFB_0356 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D RATSFB_0721 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D RATSFB_0720 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RATSFB_1238 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RATSFB_0138 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RATSFB_1205 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D RATSFB_0725 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RATSFB_1343 oxaA; putative membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D RATSFB_1094 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RATSFB_0562 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RATSFB_0564 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:asb02020] D RATSFB_0679 putative two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D RATSFB_0411 putative sensory transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D RATSFB_0209 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D RATSFB_0680 putative phosphate regulon DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D RATSFB_0678 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D RATSFB_0216 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D RATSFB_0748 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D RATSFB_0485 fliC; flagellin K02406 fliC; flagellin D RATSFB_0486 fliB(S); flagellin protein FliB(S) K02406 fliC; flagellin D RATSFB_0537 fliB(S); flagellin protein FliB(S) K02406 fliC; flagellin D RATSFB_0818 flagellin domain-containing protein K02406 fliC; flagellin D RATSFB_0948 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D RATSFB_0958 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D RATSFB_1286 OmpR; DNA-binding response regulator K07775 resD; two-component system, OmpR family, response regulator ResD D RATSFB_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RATSFB_0941 putative ABC transporter, permease protein K19084 braE; bacitracin transport system permease protein D RATSFB_0942 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein D RATSFB_0943 histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D RATSFB_0944 ompR; two component transcriptional regulator, winged helix family K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D RATSFB_0298 histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D RATSFB_0043 putative peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D RATSFB_0976 integral membrane sensor signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D RATSFB_0977 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D RATSFB_0557 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D RATSFB_0480 csrA; carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D RATSFB_1307 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RATSFB_0469 cheR; CheR methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RATSFB_0355 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_0880 mcp; putative methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_1014 putative Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_1015 mcp; putative methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_0473 CheW; chemotaxis signal transduction protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RATSFB_0466 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RATSFB_0470 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RATSFB_0472 cheY; chemotaxis protein cheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RATSFB_0468 cheB; response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RATSFB_0609 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D RATSFB_0660 DNA-binding response regulator, AraC family K07720 yesN; two-component system, response regulator YesN D RATSFB_0406 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D RATSFB_1105 WecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D RATSFB_1060 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:asb02024] D RATSFB_0609 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D RATSFB_0298 histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D RATSFB_0919 putative extracellular solute-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D RATSFB_0362 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RATSFB_0363 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RATSFB_0871 oppA; putative oligopeptide transporter, periplasmic-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RATSFB_0358 oligopeptide ABC transporter, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D RATSFB_0359 binding-protein-dependent transport system inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RATSFB_0360 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RATSFB_0361 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D RATSFB_1343 oxaA; putative membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D RATSFB_0509 splA; serine protease splA K01318 sspA; glutamyl endopeptidase [EC:3.4.21.19] D RATSFB_1238 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RATSFB_0138 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RATSFB_1205 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D RATSFB_0725 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RATSFB_1094 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RATSFB_0562 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RATSFB_0564 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RATSFB_0557 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D RATSFB_0246 phospholipase C zinc-binding K01114 plc; phospholipase C [EC:3.1.4.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:asb02030] D RATSFB_0355 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_0880 mcp; putative methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_1014 putative Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_1015 mcp; putative methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_1264 ribose ABC transporter, ribose-binding protein K10439 rbsB; ribose transport system substrate-binding protein D RATSFB_0470 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RATSFB_0473 CheW; chemotaxis signal transduction protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RATSFB_0466 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RATSFB_0472 cheY; chemotaxis protein cheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RATSFB_0471 cheC; chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC D RATSFB_0468 cheB; response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RATSFB_0467 cheD; CheD protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D RATSFB_0469 cheR; CheR methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RATSFB_0815 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D RATSFB_0474 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D RATSFB_0475 flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D RATSFB_0958 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D RATSFB_0957 OmpA/MotB protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:asb02040] D RATSFB_1144 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D RATSFB_1145 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF D RATSFB_0815 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D RATSFB_0814 putative flagellar biosynthesis/type III secretory pathway -like protein K02411 fliH; flagellar assembly protein FliH D RATSFB_0813 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D RATSFB_0812 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D RATSFB_0811 fliK; putative flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D RATSFB_0956 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D RATSFB_0474 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D RATSFB_0475 flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D RATSFB_0955 fliZ; putative flagellar biosynthesis protein FliZ K02418 fliO; flagellar protein FliO/FliZ D RATSFB_0954 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D RATSFB_0953 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D RATSFB_0951 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D RATSFB_0952 fliR; bifunctional flagellar biosynthesis proteins FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB D RATSFB_0817 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D RATSFB_0816 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D RATSFB_0810 flgD; flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D RATSFB_0484 flgG; flagellar basal-body rod protein FlgG K02390 flgE; flagellar hook protein FlgE D RATSFB_0947 flgG; flagellar basal-body rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF D RATSFB_0946 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D RATSFB_0477 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D RATSFB_0478 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D RATSFB_0485 fliC; flagellin K02406 fliC; flagellin D RATSFB_0486 fliB(S); flagellin protein FliB(S) K02406 fliC; flagellin D RATSFB_0537 fliB(S); flagellin protein FliB(S) K02406 fliC; flagellin D RATSFB_0818 flagellin domain-containing protein K02406 fliC; flagellin D RATSFB_0482 flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2 D RATSFB_0481 fliS; flagellar protein fliS K02422 fliS; flagellar secretion chaperone FliS D RATSFB_0958 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D RATSFB_0957 OmpA/MotB protein K02557 motB; chemotaxis protein MotB D RATSFB_0442 rpoD; putative RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D RATSFB_0948 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D RATSFB_0134 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:asb01501] D RATSFB_0461 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D RATSFB_0919 putative extracellular solute-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D RATSFB_0905 bla; putative beta-lactamase class A-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] D RATSFB_0735 mrcB; membrane carboxypeptidase MrcB K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RATSFB_0330 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:asb01502] D RATSFB_0043 putative peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D RATSFB_1134 ddl2; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RATSFB_0064 alr2; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RATSFB_0158 alr; alanine racemase family protein K01775 alr; alanine racemase [EC:5.1.1.1] D RATSFB_0758 UDP-N-acetylmuramoylalanyl-D-glutamyl-2 K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RATSFB_0757 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RATSFB_0412 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:asb01503] D RATSFB_0177 amiB; putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_0152 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_1189 cwlD; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_0216 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D RATSFB_0748 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:asb01000] C 01001 Protein kinases [BR:asb01001] D RATSFB_0503 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RATSFB_0679 putative two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D RATSFB_0411 putative sensory transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D RATSFB_0943 histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D RATSFB_0298 histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D RATSFB_0976 integral membrane sensor signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D RATSFB_0470 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:asb01009] D RATSFB_0084 pfkA2; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RATSFB_0502 protein serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:asb01002] D RATSFB_1082 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D RATSFB_0357 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RATSFB_0801 gpr; germination protease K06012 gpr; spore protease [EC:3.4.24.78] D RATSFB_0686 spoIIGA; sporulation factor SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D RATSFB_0535 guaA; GMP synthase (glutamine-hydrolyzing), C-terminal domain protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RATSFB_0325 cell wall-associated hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RATSFB_0884 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RATSFB_0082 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RATSFB_0935 ThiJ; ThiJ family intracellular protease K03152 thiJ; protein deglycase [EC:3.5.1.124] D RATSFB_0115 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D RATSFB_0393 hypothetical protein K07052 K07052; CAAX protease family protein D RATSFB_1154 pepF; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D RATSFB_0043 putative peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D RATSFB_0402 peptidase M16 domain protein K06972 PITRM1; presequence protease [EC:3.4.24.-] D RATSFB_1293 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RATSFB_0194 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D RATSFB_1203 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RATSFB_0189 Xaa-pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D RATSFB_1153 peptidase M28 K19701 ywaD; aminopeptidase YwaD [EC:3.4.11.6 3.4.11.10] D RATSFB_1186 iadA; isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-] D RATSFB_1269 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RATSFB_0335 peptidase M50 K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-] D RATSFB_0606 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D RATSFB_0509 splA; serine protease splA K01318 sspA; glutamyl endopeptidase [EC:3.4.21.19] D RATSFB_0216 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D RATSFB_0748 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D RATSFB_1327 subtilase family protein K17734 aprX; serine protease AprX [EC:3.4.21.-] D RATSFB_0343 dac; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RATSFB_0966 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RATSFB_0487 dac; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RATSFB_0235 clpP; ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RATSFB_1317 lon; ATP-dependent proteinase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D RATSFB_0256 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RATSFB_0089 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RATSFB_0070 ctp; carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D RATSFB_1123 cphB; cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D RATSFB_0229 putative rhomboid family protein K19225 gluP; rhomboid protease GluP [EC:3.4.21.105] D RATSFB_0228 rhomboid family protein K19225 gluP; rhomboid protease GluP [EC:3.4.21.105] D RATSFB_0556 spoIVB; stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D RATSFB_1255 peptidase U61 LD-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D RATSFB_0428 prtQ; peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-] D RATSFB_0692 peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-] C 01003 Glycosyltransferases [BR:asb01003] D RATSFB_1116 UDP-glucuronosyltransferase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D RATSFB_0423 transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D RATSFB_0735 mrcB; membrane carboxypeptidase MrcB K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RATSFB_0780 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D RATSFB_1106 wecA; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D RATSFB_1171 cyclic beta 1-2 glucan synthetase K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397] C 01005 Lipopolysaccharide biosynthesis proteins [BR:asb01005] D RATSFB_1106 wecA; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:asb01011] D RATSFB_1104 murA2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RATSFB_1324 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RATSFB_0077 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RATSFB_1291 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RATSFB_1256 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RATSFB_0759 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RATSFB_1134 ddl2; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RATSFB_0064 alr2; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RATSFB_0158 alr; alanine racemase family protein K01775 alr; alanine racemase [EC:5.1.1.1] D RATSFB_1306 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D RATSFB_1255 peptidase U61 LD-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D RATSFB_0757 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RATSFB_0412 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RATSFB_1065 uppP; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RATSFB_0735 mrcB; membrane carboxypeptidase MrcB K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RATSFB_0330 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RATSFB_0760 spoVD; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D RATSFB_0075 peptidoglycan glycosyltransferase K05364 pbpA; penicillin-binding protein A D RATSFB_0343 dac; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RATSFB_0966 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RATSFB_0487 dac; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RATSFB_0423 transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D RATSFB_0043 putative peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D RATSFB_0325 cell wall-associated hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RATSFB_0203 slt; Slt family transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D RATSFB_0694 pabC; 4-amino-4-deoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D RATSFB_1103 spoIID; sporulation stage II protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D RATSFB_0177 amiB; putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_0152 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_1189 cwlD; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:asb01004] D RATSFB_0711 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RATSFB_0712 fabH; 3-oxoacyl-(acyl carrier protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RATSFB_0709 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RATSFB_0161 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RATSFB_0710 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RATSFB_0707 fabZ; hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RATSFB_1127 fabI; enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D RATSFB_0524 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D RATSFB_1041 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RATSFB_1136 plsC; phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:asb01006] D RATSFB_0551 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RATSFB_0604 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RATSFB_0632 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:asb01007] D RATSFB_1043 gltX; glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RATSFB_0176 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D RATSFB_1170 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RATSFB_1162 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RATSFB_1244 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RATSFB_1052 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RATSFB_1315 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RATSFB_0184 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RATSFB_0906 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RATSFB_1159 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RATSFB_1266 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RATSFB_0714 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RATSFB_1289 asnC; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RATSFB_0715 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RATSFB_1257 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RATSFB_0008 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RATSFB_0029 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RATSFB_0352 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RATSFB_0700 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RATSFB_0388 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RATSFB_0389 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RATSFB_0644 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RATSFB_0898 aminotransferase class I and II K10907 K10907; aminotransferase [EC:2.6.1.-] D RATSFB_0879 putative aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RATSFB_0451 ilvE1; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RATSFB_0465 ilvE1; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:asb03000] D RATSFB_1101 spoIIID; sporulation transcriptional regulator spoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D RATSFB_0185 alr; alanine racemase K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RATSFB_1158 LacI; transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RATSFB_1039 asnC; transcription regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D RATSFB_0223 fur; transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RATSFB_0697 fur; ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RATSFB_1002 fur; ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D RATSFB_0609 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D RATSFB_0703 rrf2; RRF2 family protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D RATSFB_0743 arsR; arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RATSFB_0154 arsR; ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D RATSFB_0268 arsR; transcriptional regulator, ArsR family K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons D RATSFB_0142 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D RATSFB_1054 BirA; biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RATSFB_0261 rex; redox-sensing transcriptional repressor rex K01926 rex; redox-sensing transcriptional repressor D RATSFB_0065 hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D RATSFB_0591 putative PRD domain protein K03483 mtlR; mannitol operon transcriptional activator D RATSFB_0150 putative transcription antiterminator K03483 mtlR; mannitol operon transcriptional activator D RATSFB_0042 abrB; AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D RATSFB_1280 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D RATSFB_1337 spo0J; putative spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RATSFB_0554 argR; arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism D RATSFB_0797 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor D RATSFB_0646 pyrR; uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] C 03021 Transcription machinery [BR:asb03021] D RATSFB_1197 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RATSFB_1232 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RATSFB_1231 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RATSFB_0495 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RATSFB_0442 rpoD; putative RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D RATSFB_0452 sigV; RNA polymerase sigma factor SigV K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RATSFB_0684 sigG; sporulation sigma factor SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D RATSFB_0685 SigE; sporulation sigma factor SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D RATSFB_0690 sigE1; sporulation sigma factor SigK K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D RATSFB_0866 sigF; sporulation sigma factor SigF K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D RATSFB_1240 sigH; RNA polymerase sigma-H factor K27000 sigH; RNA polymerase sigma-H factor D RATSFB_0948 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D RATSFB_0611 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RATSFB_0548 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D RATSFB_1237 nusG; NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D RATSFB_1267 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D RATSFB_1114 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:asb03019] D RATSFB_0526 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RATSFB_0696 beta-lactamase domain-containing protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D RATSFB_0627 phosphodiesterase K18682 rny; ribonucrease Y [EC:3.1.-.-] D RATSFB_0139 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D RATSFB_0013 yhaM; 3'-5' exoribonuclease YhaM K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D RATSFB_0134 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RATSFB_0619 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RATSFB_1114 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RATSFB_0084 pfkA2; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RATSFB_0795 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D RATSFB_0354 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RATSFB_0480 csrA; carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D RATSFB_0078 putative P-loop ATPase protein family K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:asb03011] D RATSFB_0193 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D RATSFB_0600 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RATSFB_1219 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RATSFB_1198 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RATSFB_1208 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RATSFB_1333 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D RATSFB_1229 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RATSFB_1211 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RATSFB_1190 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RATSFB_1226 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RATSFB_1199 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RATSFB_1230 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RATSFB_1200 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RATSFB_1212 rpsZ; 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14 D RATSFB_0618 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RATSFB_0565 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D RATSFB_1216 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RATSFB_1331 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RATSFB_1221 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RATSFB_0802 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D RATSFB_0785 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D RATSFB_1235 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RATSFB_1222 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RATSFB_1225 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RATSFB_1224 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D RATSFB_1213 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RATSFB_1210 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RATSFB_1316 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D RATSFB_1234 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RATSFB_1236 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RATSFB_1233 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D RATSFB_1191 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RATSFB_1215 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RATSFB_1206 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RATSFB_1218 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D RATSFB_1196 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D RATSFB_1209 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RATSFB_0568 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D RATSFB_0384 rplT1; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D RATSFB_0336 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D RATSFB_1220 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RATSFB_1223 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RATSFB_1214 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RATSFB_0338 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D RATSFB_0511 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RATSFB_1217 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RATSFB_1207 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RATSFB_1113 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RATSFB_0523 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RATSFB_1346 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D RATSFB_0383 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D RATSFB_1201 rpl36; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D RATSFB_0783 rplY_1; 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D RATSFB_5srRNA01 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA03 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA05 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA06 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA04 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA02 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_16srRNA01 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA03 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA02 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA04 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA05 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_23srRNA01 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA02 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA03 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA05 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA04 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:asb03009] D RATSFB_0526 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RATSFB_0436 era; GTP-binding protein Era K03595 era; GTPase D RATSFB_0339 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D RATSFB_0611 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RATSFB_0548 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D RATSFB_1237 nusG; NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D RATSFB_0922 putative ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D RATSFB_1296 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D RATSFB_0500 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D RATSFB_0514 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D RATSFB_0789 rsmE; 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D RATSFB_1340 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RATSFB_0762 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D RATSFB_0041 tpm; tetrapyrrole (Corrin/Porphyrin) methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D RATSFB_1173 npmA; 16S rRNA methylase K18846 npmA; 16S rRNA (adenine(1408)-N(1))-methyltransferase [EC:2.1.1.180] D RATSFB_0552 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D RATSFB_1242 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D RATSFB_1320 SPOUT methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D RATSFB_1321 rlmH; rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D RATSFB_0501 rlmN; radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D RATSFB_0086 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D RATSFB_1011 rumA1; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D RATSFB_0242 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D RATSFB_0342 rluA; pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D RATSFB_0751 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D RATSFB_0098 rluF; ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D RATSFB_1090 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D RATSFB_0566 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D RATSFB_0624 yliG; MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D RATSFB_0790 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D RATSFB_0698 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D RATSFB_1243 rnc; ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D RATSFB_0504 putative GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RATSFB_0998 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RATSFB_0669 engA; ribosome-associated GTPase EngA K03977 engA; GTPase D RATSFB_0569 rbgA; ribosomal biogenesis GTPase K14540 rbgA; ribosome biogenesis GTPase A D RATSFB_0734 GTP-binding protein K03665 hflX; GTPase D RATSFB_1109 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RATSFB_0717 spoT; RelA/SpoT protein, (p)ppGpp synthetase/pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D RATSFB_0614 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D RATSFB_0610 rimP; ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP D RATSFB_0433 putative metalloprotease K07042 ybeY; probable rRNA maturation factor D RATSFB_1095 yfiA; SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor D RATSFB_0775 engD; GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase D RATSFB_0522 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:asb03016] D RATSFB_0012 polynucleotide adenylyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D RATSFB_1043 gltX; glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RATSFB_0029 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RATSFB_0184 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RATSFB_1159 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RATSFB_1315 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RATSFB_0176 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D RATSFB_1052 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RATSFB_1266 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RATSFB_0714 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RATSFB_0700 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RATSFB_1289 asnC; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RATSFB_1257 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RATSFB_0352 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RATSFB_0008 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RATSFB_1244 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RATSFB_0906 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RATSFB_0715 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RATSFB_0388 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RATSFB_0389 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RATSFB_1170 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RATSFB_1162 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RATSFB_0787 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RATSFB_1053 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D RATSFB_1192 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D RATSFB_0616 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D RATSFB_0702 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RATSFB_1109 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RATSFB_0632 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D RATSFB_1342 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D RATSFB_1341 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RATSFB_0345 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D RATSFB_1345 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D RATSFB_0032 cytidine/deoxycytidylate deaminase family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D RATSFB_1268 nifR; nitrogen regulation protein nifR3 K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D RATSFB_0635 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D RATSFB_0788 miaB; RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D RATSFB_0567 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D RATSFB_0443 trmA; putative SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D RATSFB_1132 hypothetical protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D RATSFB_0387 trmH; RNA methyltransferase, TrmH family K03437 spoU; RNA methyltransferase, TrmH family D RATSFB_0701 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D RATSFB_0173 PP-loop domain-containing protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D RATSFB_0727 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D RATSFB_1137 iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D RATSFB_0457 selU; tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D RATSFB_0726 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D RATSFB_1271 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D RATSFB_1089 glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D RATSFB_0214 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D RATSFB_1088 putative ATPase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D RATSFB_0039 molybdopterin/thiamine biosynthesis family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D RATSFB_0519 hypothetical protein K27343 tmcAL; tRNAmet cytidine acetate ligase [EC:6.3.1.22] D RATSFB_0139 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D RATSFB_0619 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:asb03012] D RATSFB_0613 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D RATSFB_0382 infC2; putative translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D RATSFB_0217 ABC transporter, ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D RATSFB_0601 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D RATSFB_1239 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D RATSFB_1227 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D RATSFB_1228 fusA; elongation factor G K02355 fusA; elongation factor G D RATSFB_0347 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D RATSFB_1110 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D RATSFB_0603 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D RATSFB_1111 hemK; methyltransferase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D RATSFB_1283 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D RATSFB_1202 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D RATSFB_0831 efp; elongation factor P K02356 efp; elongation factor P D RATSFB_1093 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D RATSFB_1167 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:asb03110] D RATSFB_1246 clpC; negative regulator of genetic competence ClpC/mecB K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D RATSFB_0236 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D RATSFB_1258 clpX; ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D RATSFB_0795 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D RATSFB_0354 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RATSFB_0794 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D RATSFB_0746 hslO; chaperonin HslO K04083 hslO; molecular chaperone Hsp33 D RATSFB_0796 grpE; heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D RATSFB_0353 groES; co-chaperonin GroES K04078 groES; chaperonin GroES D RATSFB_0216 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D RATSFB_0748 putative serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D RATSFB_1269 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RATSFB_0351 ppiA; peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D RATSFB_1281 prsA; foldase protein PrsA K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D RATSFB_1282 prsA; peptidylprolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D RATSFB_1185 trx; thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:asb04131] D RATSFB_0657 alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D RATSFB_0130 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RATSFB_0085 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:asb03032] D RATSFB_1278 hup1; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta D RATSFB_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RATSFB_1319 putative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RATSFB_1330 DnaC; putative DNA replication protein DnaC K02315 dnaC; DNA replication protein DnaC D RATSFB_0441 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RATSFB_0059 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein D RATSFB_1332 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RATSFB_0083 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RATSFB_0608 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D RATSFB_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RATSFB_0803 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RATSFB_1251 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RATSFB_1061 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RATSFB_0033 dnaX; putative DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RATSFB_0570 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RATSFB_0920 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RATSFB_0006 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RATSFB_0005 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RATSFB_0599 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:asb03036] D RATSFB_0526 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RATSFB_1278 hup1; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta D RATSFB_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RATSFB_0561 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D RATSFB_0964 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A D RATSFB_0963 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B D RATSFB_1274 septum formation initiator K13052 divIC; cell division protein DivIC D RATSFB_0068 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RATSFB_0623 ftsK; DNA translocase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RATSFB_0371 putative FHA domain containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RATSFB_0761 ftsL; putative cell division protein FtsL K03586 ftsL; cell division protein FtsL D RATSFB_0755 ftsQ; putative cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D RATSFB_0756 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D RATSFB_0069 FtsX; putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RATSFB_0687 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RATSFB_0419 hypothetical protein K09888 zapA; cell division protein ZapA D RATSFB_0177 amiB; putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_0152 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_1189 cwlD; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_0331 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D RATSFB_0332 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D RATSFB_0333 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D RATSFB_0752 putative cell-division initiation protein K04074 divIVA; cell division initiation protein D RATSFB_0750 hypothetical protein K09772 sepF; cell division inhibitor SepF D RATSFB_0754 hypothetical protein K09772 sepF; cell division inhibitor SepF D RATSFB_0327 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RATSFB_0328 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D RATSFB_0329 MreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D RATSFB_0334 ftsW; cell cycle protein FtsW K05837 rodA; rod shape determining protein RodA D RATSFB_1336 soj; sporulation initiation inhibitor protein soj K03496 parA; chromosome partitioning protein D RATSFB_1337 spo0J; putative spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RATSFB_1341 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RATSFB_1340 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RATSFB_0237 engB; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein D RATSFB_0080 whiA; putative sporulation transcription regulator whiA K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:asb03400] D RATSFB_0020 putative ATase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RATSFB_0157 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D RATSFB_0262 ogg; 8-oxoguanine-DNA-glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D RATSFB_1135 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RATSFB_0936 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RATSFB_0021 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RATSFB_0528 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RATSFB_0410 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RATSFB_0920 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RATSFB_0073 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D RATSFB_0072 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D RATSFB_0076 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D RATSFB_0090 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RATSFB_0450 helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RATSFB_0921 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RATSFB_1232 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RATSFB_1231 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RATSFB_1197 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RATSFB_0495 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RATSFB_0634 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RATSFB_0429 msh1; DNA mismatch repair MutS-like protein K07456 mutS2; DNA mismatch repair protein MutS2 D RATSFB_0633 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D RATSFB_0549 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RATSFB_0550 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RATSFB_0083 dnaE; DNA polymerase III DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RATSFB_0608 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D RATSFB_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RATSFB_0803 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RATSFB_1251 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RATSFB_1061 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RATSFB_0033 dnaX; putative DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RATSFB_0059 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein D RATSFB_1332 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RATSFB_1098 recD; RecD/TraA family helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D RATSFB_0626 recA; recombinase A K03553 recA; recombination protein RecA D RATSFB_0729 RuvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RATSFB_0728 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RATSFB_0496 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RATSFB_0973 SbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 D RATSFB_1084 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D RATSFB_0974 sbcD; nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RATSFB_0881 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D RATSFB_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D RATSFB_0513 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RATSFB_0437 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) D RATSFB_0035 recR; recombination protein recr K06187 recR; recombination protein RecR D RATSFB_0555 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D RATSFB_0011 addA; ATP-dependent deoxyribonuclease chain A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D RATSFB_0010 addB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D RATSFB_0580 cas1; CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1 D RATSFB_0006 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RATSFB_0005 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RATSFB_0599 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RATSFB_1278 hup1; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta D RATSFB_0909 recX; recombination regulator RecX K03565 recX; regulatory protein D RATSFB_1036 nrdJ; vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RATSFB_0615 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:asb03029] D RATSFB_0613 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D RATSFB_0382 infC2; putative translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D RATSFB_0601 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D RATSFB_1239 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D RATSFB_1227 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D RATSFB_1228 fusA; elongation factor G K02355 fusA; elongation factor G D RATSFB_0436 era; GTP-binding protein Era K03595 era; GTPase D RATSFB_1170 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RATSFB_1159 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RATSFB_0714 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RATSFB_1257 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RATSFB_1052 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RATSFB_0059 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein D RATSFB_1332 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RATSFB_0795 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D RATSFB_0796 grpE; heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D RATSFB_0354 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RATSFB_0353 groES; co-chaperonin GroES K04078 groES; chaperonin GroES D RATSFB_0794 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D RATSFB_0702 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RATSFB_1343 oxaA; putative membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:asb02000] D RATSFB_0770 ABC-type multidrug/protein/lipid transport system, ATPase component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D RATSFB_0769 ABC transporter, ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D RATSFB_0982 putative ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RATSFB_0654 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RATSFB_0656 extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D RATSFB_0659 ABC transporter K17319 lplB; putative aldouronate transport system permease protein D RATSFB_0658 sugar transport system K17320 lplC; putative aldouronate transport system permease protein D RATSFB_1264 ribose ABC transporter, ribose-binding protein K10439 rbsB; ribose transport system substrate-binding protein D RATSFB_1262 ribose ABC transporter K10440 rbsC; ribose transport system permease protein D RATSFB_1261 ribose ABC transporter K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RATSFB_0125 lipoprotein, bmp family K07335 bmpA; basic membrane protein A and related proteins D RATSFB_0127 branched chain amino acid ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D RATSFB_0128 rbsC; ribose transport system permease protein rbsC K23536 nupC; general nucleoside transport system permease protein D RATSFB_0126 putative sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D RATSFB_0678 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D RATSFB_0677 pstC; phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D RATSFB_0676 pstA; phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein D RATSFB_0675 pstB; phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RATSFB_0538 phnD; phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D RATSFB_0540 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D RATSFB_0542 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D RATSFB_0539 phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D RATSFB_0120 amino acid ABC transporter ATP-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D RATSFB_0119 glnP; glutamine ABC transporter, permease/substrate-binding protein K17077 artQ; arginine/lysine/histidine transport system permease protein D RATSFB_0118 artP; arginine ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D RATSFB_1302 putative TonB-dependent receptor K02073 metQ; D-methionine transport system substrate-binding protein D RATSFB_0919 putative extracellular solute-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D RATSFB_0362 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RATSFB_0363 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RATSFB_0871 oppA; putative oligopeptide transporter, periplasmic-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RATSFB_0358 oligopeptide ABC transporter, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D RATSFB_0359 binding-protein-dependent transport system inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RATSFB_0360 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RATSFB_0361 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D RATSFB_0988 iron compound ABC transporter, iron compound-binding protein K25308 fhuD; ferric hydroxamate/heme transport system substrate-binding protein D RATSFB_0989 fhuB; putative ferrichrome transport system permease protein FhuB K25288 fhuB; ferric hydroxamate/heme transport system permease protein D RATSFB_0990 fhuG; putative ferrichrome transport system permease protein FhuG K25289 fhuG; ferric hydroxamate/heme transport system permease protein D RATSFB_0991 fhuC; ferrichrome transport ATP-binding protein FhuC K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16] D RATSFB_0845 putative heme ABC transporter, heme-binding protein IsdE K25113 htsA; heme transport system substrate-binding protein D RATSFB_0844 putative ferrichrome ABC transporter K25114 htsB; heme transport system permease protein D RATSFB_0843 fhuC; putative ferrichrome transport ATP-binding protein FhuC K25115 htsC; heme transport system ATP-binding protein [EC:7.6.2.5] D RATSFB_0983 periplasmic binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D RATSFB_0985 iron chelate uptake ABC transporter, FeCT family, permease protein K25283 yclO; iron-siderophore transport system permease protein D RATSFB_0986 putative iron compound ABC transporter, permease protein K25284 yclN; iron-siderophore transport system permease protein D RATSFB_0984 fhuC; putative iron compound ABC transporter, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D RATSFB_0289 iron compound ABC transporter, iron-binding protein K25034 btuF; cobalamin transport system substrate-binding protein D RATSFB_0290 iron chelate uptake ABC transporter, FeCT family, permease protein K25027 btuC; cobalamin transport system permease protein D RATSFB_0291 FhuC; putative ferrichrome transport ATP-binding protein FhuC K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D RATSFB_0226 manganese/zinc/iron chelate ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D RATSFB_0224 zurM; hydrophobic membrane protein ZurM K09816 znuB; zinc transport system permease protein D RATSFB_0225 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RATSFB_1003 bioY; BioY family protein K03523 bioY; biotin transport system substrate-specific component D RATSFB_1310 putative membrane protein K16924 mtsT; energy-coupling factor transport system substrate-specific component D RATSFB_1312 putative cobalt ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein D RATSFB_1193 cobalt ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein D RATSFB_1195 cbiO; cobalt transporter ATP-binding subunit K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RATSFB_1194 cbiO1; cobalt import ATP-binding protein CbiO 1 K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RATSFB_1311 cbiO; cobalt import ATP-binding protein CbiO K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RATSFB_0941 putative ABC transporter, permease protein K19084 braE; bacitracin transport system permease protein D RATSFB_0942 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein D RATSFB_0069 FtsX; putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RATSFB_0068 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RATSFB_0929 NatB; ABC-type Na+ efflux pump, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D RATSFB_0643 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RATSFB_0642 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RATSFB_0930 natA; ATP-binding transport protein NatA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RATSFB_0111 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D RATSFB_0315 putative ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D RATSFB_0110 antimicrobial peptide ABC superfamily ATP binding cassette transporter ABC protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RATSFB_0314 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RATSFB_1025 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D RATSFB_0422 matE; MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D RATSFB_0999 matE; MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D RATSFB_0940 matE; MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D RATSFB_0153 matE; MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D RATSFB_1187 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D RATSFB_0629 hpr; phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D RATSFB_0546 PTS system, IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RATSFB_0149 PTS system mannitol-specific transporter subunit IIC K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D RATSFB_0821 licA; lichenan-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D RATSFB_0851 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D RATSFB_0850 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component D RATSFB_0864 PTS lactose/cellobiose IIC component K02761 celB; cellobiose PTS system EIIC component D RATSFB_0275 putative PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D RATSFB_0276 PTS family mannose/fructose/sorbose porter component IIC K02795 manY; mannose PTS system EIIC component D RATSFB_0277 manZ; PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component D RATSFB_0592 ulaC; ascorbate-specific phosphotransferase enzyme IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D RATSFB_0858 PTS system, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D RATSFB_0594 PTS system, lactose/cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D RATSFB_0856 PTS system, lactose/cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D RATSFB_0593 ulaA; ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component D RATSFB_0857 putative sugar-specific permease, SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component D RATSFB_0507 putative membrane protein K21993 fdhC; formate transporter D RATSFB_1049 MscS mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel D RATSFB_1138 CBS domain/MgtE intracellular domain protein K06213 mgtE; magnesium transporter D RATSFB_0958 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D RATSFB_0957 OmpA/MotB protein K02557 motB; chemotaxis protein MotB D RATSFB_0271 corA; putative magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D RATSFB_1254 magnesium and cobalt transporter K03284 corA; magnesium transporter D RATSFB_0031 putative membrane CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RATSFB_1071 hypothetical protein K21449 ata; trimeric autotransporter adhesin D RATSFB_0895 hypothetical protein K21449 ata; trimeric autotransporter adhesin D RATSFB_0847 membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D RATSFB_0877 yrbG; sodium/calcium exchanger protein K07301 yrbG; cation:H+ antiporter D RATSFB_1083 Na(+)/H(+) antiporter K26730 napA; Na+:H+ antiporter D RATSFB_0385 trkH; potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D RATSFB_0386 trkA; trk system potassium uptake protein trkA K03499 trkA; trk/ktr system potassium uptake protein D RATSFB_1078 cytosine permease K10974 codB; cytosine permease D RATSFB_0645 uracil permease K02824 uraA; uracil permease D RATSFB_0534 guanine-hypoxanthine permease K06901 pbuG; adenine/guanine/hypoxanthine permease D RATSFB_0023 chrA; putative chromate transporter K07240 chrA; chromate transporter D RATSFB_0024 chrA; chromate transport protein K07240 chrA; chromate transporter D RATSFB_0243 spoVB; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D RATSFB_0244 spoVB; putative stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D RATSFB_1279 stage V sporulation protein B transporter K06409 spoVB; stage V sporulation protein B D RATSFB_1091 riboflavin transporter K23675 fmnP; riboflavin transporter D RATSFB_1143 putative proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter D RATSFB_0993 transporter K09125 yhhQ; queuosine precursor transporter D RATSFB_0756 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D RATSFB_1016 oadB; Na+ transporting oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D RATSFB_1019 pycB; pyruvate carboxylase subunit B K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D RATSFB_1017 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D RATSFB_1018 sodium pump decarboxylase, gamma subunit subfamily K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D RATSFB_1045 feoA; ferrous iron uptake protein feoa K04758 feoA; ferrous iron transport protein A D RATSFB_1147 hypothetical protein K04758 feoA; ferrous iron transport protein A D RATSFB_1146 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D RATSFB_1046 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D RATSFB_0196 TspO and MBR like protein K05770 TSPO; translocator protein C 02044 Secretion system [BR:asb02044] D RATSFB_0356 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D RATSFB_0357 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RATSFB_0840 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D RATSFB_0839 putative type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D RATSFB_0689 pilT; putative twitching motility protein K02669 pilT; twitching motility protein PilT D RATSFB_0344 putative comE operon protein 1 K02237 comEA; competence protein ComEA D RATSFB_0804 putative competence protein K02238 comEC; competence protein ComEC D RATSFB_1042 metallo-beta-lactamase domain protein K02238 comEC; competence protein ComEC D RATSFB_1096 comF; putative ComF protein K02242 comFC; competence protein ComFC D RATSFB_0951 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D RATSFB_1145 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF D RATSFB_0814 putative flagellar biosynthesis/type III secretory pathway -like protein K02411 fliH; flagellar assembly protein FliH D RATSFB_0813 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D RATSFB_0475 flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D RATSFB_0955 fliZ; putative flagellar biosynthesis protein FliZ K02418 fliO; flagellar protein FliO/FliZ D RATSFB_0954 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D RATSFB_0953 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D RATSFB_0952 fliR; bifunctional flagellar biosynthesis proteins FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB D RATSFB_1094 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RATSFB_0721 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D RATSFB_1238 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RATSFB_0720 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RATSFB_0138 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RATSFB_1205 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D RATSFB_0564 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RATSFB_0562 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RATSFB_0725 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RATSFB_1343 oxaA; putative membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:asb02042] D RATSFB_0648 mae1; C4-dicarboxylate transporter/malic acid transporter K11041 eta; exfoliative toxin A/B D RATSFB_0031 putative membrane CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RATSFB_0246 phospholipase C zinc-binding K01114 plc; phospholipase C [EC:3.1.4.3] C 02022 Two-component system [BR:asb02022] D RATSFB_0679 putative two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D RATSFB_0411 putative sensory transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D RATSFB_0209 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D RATSFB_0680 putative phosphate regulon DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D RATSFB_1286 OmpR; DNA-binding response regulator K07775 resD; two-component system, OmpR family, response regulator ResD D RATSFB_0943 histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D RATSFB_0944 ompR; two component transcriptional regulator, winged helix family K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D RATSFB_0298 histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D RATSFB_0976 integral membrane sensor signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D RATSFB_0977 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D RATSFB_0557 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D RATSFB_0470 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RATSFB_0472 cheY; chemotaxis protein cheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RATSFB_0468 cheB; response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RATSFB_0660 DNA-binding response regulator, AraC family K07720 yesN; two-component system, response regulator YesN C 02035 Bacterial motility proteins [BR:asb02035] D RATSFB_0470 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RATSFB_0473 CheW; chemotaxis signal transduction protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RATSFB_0466 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D RATSFB_0471 cheC; chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC D RATSFB_0467 cheD; CheD protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D RATSFB_0469 cheR; CheR methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RATSFB_0468 cheB; response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RATSFB_0472 cheY; chemotaxis protein cheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RATSFB_0355 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_0880 mcp; putative methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_1014 putative Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_1015 mcp; putative methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D RATSFB_0814 putative flagellar biosynthesis/type III secretory pathway -like protein K02411 fliH; flagellar assembly protein FliH D RATSFB_0813 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D RATSFB_0812 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D RATSFB_0955 fliZ; putative flagellar biosynthesis protein FliZ K02418 fliO; flagellar protein FliO/FliZ D RATSFB_0954 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D RATSFB_0953 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D RATSFB_0952 fliR; bifunctional flagellar biosynthesis proteins FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB D RATSFB_0951 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D RATSFB_0815 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D RATSFB_0474 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D RATSFB_0475 flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D RATSFB_1145 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF D RATSFB_0956 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D RATSFB_1144 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D RATSFB_0811 fliK; putative flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D RATSFB_0817 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D RATSFB_0816 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D RATSFB_0810 flgD; flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D RATSFB_0947 flgG; flagellar basal-body rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF D RATSFB_0946 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D RATSFB_0484 flgG; flagellar basal-body rod protein FlgG K02390 flgE; flagellar hook protein FlgE D RATSFB_0477 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D RATSFB_0478 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D RATSFB_0485 fliC; flagellin K02406 fliC; flagellin D RATSFB_0486 fliB(S); flagellin protein FliB(S) K02406 fliC; flagellin D RATSFB_0537 fliB(S); flagellin protein FliB(S) K02406 fliC; flagellin D RATSFB_0818 flagellin domain-containing protein K02406 fliC; flagellin D RATSFB_0482 flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2 D RATSFB_0481 fliS; flagellar protein fliS K02422 fliS; flagellar secretion chaperone FliS D RATSFB_0948 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D RATSFB_0958 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D RATSFB_0957 OmpA/MotB protein K02557 motB; chemotaxis protein MotB D RATSFB_0479 fliW; flagellar assembly factor FliW K13626 fliW; flagellar assembly factor FliW D RATSFB_0809 flbD; flagellar FlbD family protein K02385 flbD; flagellar protein FlbD D RATSFB_0950 flhF; flagellar biosynthesis regulator FlhF K02404 flhF; flagellar biosynthesis protein FlhF D RATSFB_0689 pilT; putative twitching motility protein K02669 pilT; twitching motility protein PilT D RATSFB_0840 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D RATSFB_0839 putative type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D RATSFB_0357 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:asb04812] D RATSFB_0327 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RATSFB_0687 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RATSFB_0331 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D RATSFB_0332 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D RATSFB_0333 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D RATSFB_1336 soj; sporulation initiation inhibitor protein soj K03496 parA; chromosome partitioning protein D RATSFB_1337 spo0J; putative spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:asb04147] D RATSFB_0134 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RATSFB_0130 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RATSFB_0131 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RATSFB_0085 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RATSFB_0354 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RATSFB_0795 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D RATSFB_0927 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RATSFB_0533 guaC; GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RATSFB_1239 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D RATSFB_1227 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D RATSFB_0787 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RATSFB_1204 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RATSFB_0718 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D RATSFB_1307 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RATSFB_0067 alpha-N-acetylglucosaminidase family protein K01205 NAGLU; alpha-N-acetylglucosaminidase [EC:3.2.1.50] D RATSFB_0311 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RATSFB_0132 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:asb02048] D RATSFB_0580 cas1; CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1 D RATSFB_0581 cas2; CRISPR-associated protein cas2 K09951 cas2; CRISPR-associated protein Cas2 D RATSFB_0575 cas3; CRISPR-associated helicase Cas3 domain-containing protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D RATSFB_0579 cas4; CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D RATSFB_0577 csd1; CRISPR-associated protein, Csd1 family K19117 csd1; CRISPR-associated protein Csd1 D RATSFB_0578 csh2; CRISPR-associated Csh2 family protein K19118 csd2; CRISPR-associated protein Csd2 D RATSFB_0576 cas5; CRISPR-associated protein Cas5 family K19119 cas5d; CRISPR-associated protein Cas5d D RATSFB_0587 hsdR; type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D RATSFB_0636 restriction modification system DNA specificity domain-containing protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D RATSFB_0672 putative restriction endonuclease type I S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D RATSFB_0586 type I restriction modification DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D RATSFB_1265 type I restriction/modification specificity protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D RATSFB_0965 type I restriction modification DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D RATSFB_0585 hsdM; type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D RATSFB_0066 ndoA; endoribonuclease EndoA K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D RATSFB_0065 hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D RATSFB_0687 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RATSFB_0327 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RATSFB_1043 gltX; glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RATSFB_0702 nifS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:asb01504] D RATSFB_1173 npmA; 16S rRNA methylase K18846 npmA; 16S rRNA (adenine(1408)-N(1))-methyltransferase [EC:2.1.1.180] D RATSFB_0905 bla; putative beta-lactamase class A-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] D RATSFB_0043 putative peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:asb03100] D RATSFB_tRNA02 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RATSFB_tRNA06 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RATSFB_tRNA05 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RATSFB_tRNA21 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RATSFB_tRNA27 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RATSFB_tRNA10 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RATSFB_tRNA11 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RATSFB_tRNA25 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RATSFB_tRNA38 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RATSFB_tRNA23 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D RATSFB_tRNA16 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RATSFB_tRNA36 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RATSFB_tRNA39 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RATSFB_tRNA19 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RATSFB_tRNA14 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RATSFB_tRNA20 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RATSFB_tRNA15 tRNA-His K14226 tRNA-His; tRNA His D RATSFB_tRNA35 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RATSFB_tRNA09 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RATSFB_tRNA12 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RATSFB_tRNA18 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RATSFB_tRNA08 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RATSFB_tRNA17 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RATSFB_tRNA33 tRNA-Met K14230 tRNA-Met; tRNA Met D RATSFB_tRNA34 tRNA-Met K14230 tRNA-Met; tRNA Met D RATSFB_tRNA01 tRNA-Met K14230 tRNA-Met; tRNA Met D RATSFB_tRNA22 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RATSFB_tRNA24 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RATSFB_tRNA13 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RATSFB_tRNA04 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RATSFB_tRNA07 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RATSFB_tRNA03 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RATSFB_tRNA29 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RATSFB_tRNA32 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RATSFB_tRNA28 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D RATSFB_tRNA31 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RATSFB_tRNA37 tRNA-Val K14237 tRNA-Val; tRNA Val D RATSFB_tRNA30 tRNA-Val K14237 tRNA-Val; tRNA Val D RATSFB_tRNA26 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D RATSFB_16srRNA01 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA03 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA02 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA04 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_16srRNA05 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RATSFB_23srRNA01 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA02 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA03 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA05 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_23srRNA04 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RATSFB_5srRNA01 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA03 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA05 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA06 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA04 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RATSFB_5srRNA02 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D RATSFB_0749 iron-containing alcohol dehydrogenase K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-] D RATSFB_0060 metallo-beta-lactamase family flavodoxin K22405 fprA1_2; NADH oxidase (H2O-forming) [EC:1.6.3.4] D RATSFB_1006 putative manganese-containing catalase K07217 ydbD; manganese catalase [EC:1.11.1.6] D RATSFB_0846 peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D RATSFB_0771 iron hydrogenase K00532 E1.12.7.2; ferredoxin hydrogenase [EC:1.12.7.2] D RATSFB_1004 acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D RATSFB_0981 cbpA; cellobiose phosphorylase K21298 E2.4.1.333; 1,2-beta-oligoglucan phosphorylase [EC:2.4.1.333] D RATSFB_0190 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D RATSFB_1182 hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D RATSFB_0867 spoIIAB; anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D RATSFB_0270 hprK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D RATSFB_1247 ATP:guanido phosphotransferase K19405 mcsB; protein arginine kinase [EC:2.7.14.1] D RATSFB_0959 fcbC; 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D RATSFB_1272 spoIIE; stage II sporulation protein E, protein serine/threonine phosphatase K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16] D RATSFB_0432 metal dependent phosphohydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D RATSFB_1299 tatD; TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D RATSFB_1297 rnmV; ribonuclease M5 K05985 rnmV; ribonuclease M5 [EC:3.1.26.8] D RATSFB_0181 nuclease of thermonuclease family K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D RATSFB_1029 cell wall surface anchor family protein K03931 ygjK; glucosidase [EC:3.2.1.-] D RATSFB_1085 dac; D-alanyl-D-alanine carboxypeptidase family protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D RATSFB_0673 cwlH; N-acetylmuramoyl-L-alanine amidase CwlH K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_0939 ampD; N-acetylmuramoyl-L-alanine amidase family 2 K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_1339 cwlH; N-acetylmuramoyl-L-alanine amidase CwlH K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RATSFB_0497 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RATSFB_0208 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D RATSFB_1086 pgdA; peptidoglycan N-acetylglucosamine deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D RATSFB_0902 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D RATSFB_0776 nodB; chitooligosaccharide deacetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-] D RATSFB_1108 protein tyrosine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2] D RATSFB_0281 myosin-cross-reactive antigen K10254 ohyA; oleate hydratase [EC:4.2.1.53] D RATSFB_1122 cphA; cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D RATSFB_0302 calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D RATSFB_0508 putative calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D RATSFB_0683 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D RATSFB_1021 nifU; NifU family SUF system FeS assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins C 99983 Lipid metabolism D RATSFB_1131 degV; degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism D RATSFB_0573 prophage Lp1 protein 65 K15051 endA; DNA-entry nuclease C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism D RATSFB_1174 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D RATSFB_1092 RNA-binding S1 domain-containing protein K06959 tex; protein Tex D RATSFB_0493 hypothetical protein K09777 remA; extracellular matrix regulatory protein A D RATSFB_0004 orfX; hypothetical protein K24648 remB; extracellular matrix regulatory protein B C 99974 Translation D RATSFB_1273 RNA binding S1 domain protein K07571 K07571; S1 RNA binding domain protein D RATSFB_0459 metallo-beta-lactamase family protein K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D RATSFB_1248 mcsA; McsA protein K19411 mcsA; protein arginine kinase activator D RATSFB_0234 tig; trigger factor protein K03545 tig; trigger factor D RATSFB_0140 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D RATSFB_0308 hydrogenase maturation factor K04655 hypE; hydrogenase expression/formation protein HypE D RATSFB_0597 chlI; Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D RATSFB_0532 rnhA; ribonuclease HI K06993 K06993; ribonuclease H-related protein D RATSFB_0200 hypothetical protein K09760 rmuC; DNA recombination protein RmuC D RATSFB_0572 hypothetical protein K07460 yraN; putative endonuclease D RATSFB_0598 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein D RATSFB_0793 rarA; recombination factor protein RarA K07478 ycaJ; putative ATPase C 99979 Viral proteins C 99998 Others D RATSFB_0034 transcriptional regulatory protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D RATSFB_0455 amino acid permease-associated region K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RATSFB_0220 putative sodium:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family C 99978 Cell growth D RATSFB_0378 ric; putative iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D RATSFB_0379 scdA; putative ScdA protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D RATSFB_0186 spmA; spore maturation protein A K06373 spmA; spore maturation protein A D RATSFB_0187 spmB; spore maturation protein B K06374 spmB; spore maturation protein B D RATSFB_0868 anti-sigma-factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D RATSFB_0969 spoIIM; putative stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M D RATSFB_0800 spoIIP; stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P D RATSFB_1117 spoIIR; stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R D RATSFB_0830 spoIIIAA; stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA D RATSFB_0828 spoIIIAC; stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC D RATSFB_0827 spoIIIAD; stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD D RATSFB_0826 spoIIIAE; stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE D RATSFB_0825 spoIIIAF; putative stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF D RATSFB_0824 spoIIIAG; stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG D RATSFB_0823 spoIIIAH; putative stage III sporulation protein AH K06397 spoIIIAH; stage III sporulation protein AH D RATSFB_0667 sporulation stage IV K06398 spoIVA; stage IV sporulation protein A D RATSFB_0807 spoVAC_2; stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D RATSFB_0806 spoVAD; stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD D RATSFB_0805 spoVAE; stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D RATSFB_1169 alanine dehydrogenase/PNT domain protein K06410 spoVFA; dipicolinate synthase subunit A D RATSFB_0364 spoVFB; dipicolinate synthase subunit B K06411 spoVFB; dipicolinate synthase subunit B D RATSFB_1292 spoVG; putative septation protein spoVG K06412 spoVG; stage V sporulation protein G D RATSFB_0628 spoVS; stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D RATSFB_0527 spoVS; stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D RATSFB_0231 sspC1; small acid-soluble spore protein C1 K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP) D RATSFB_0399 putative small acid-soluble spore protein K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP) D RATSFB_1126 yabG; sporulation peptidase YabG K06436 yabG; spore coat assemly protein D RATSFB_0431 YqfD; sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein D RATSFB_1120 gerA; GerA spore germination protein K06310 yndD; spore germination protein C 99993 Cell motility C 99995 Signaling proteins C 99992 Structural proteins D RATSFB_0109 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein C 99994 Others D RATSFB_0674 phoU; phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D RATSFB_0861 cutC; CutC family protein K06201 cutC; copper homeostasis protein D RATSFB_0267 hypothetical protein K26996 sdpI; immunity protein, SdpI family B B 09194 Poorly characterized C 99996 General function prediction only D RATSFB_0590 yqeF; putative acyltransferase K02348 elaA; ElaA protein D RATSFB_0647 putative hydrolase K04477 ycdX; putative hydrolase D RATSFB_1024 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D RATSFB_1023 iron-regulated ABC-type transporter membrane component K09015 sufD; Fe-S cluster assembly protein SufD D RATSFB_0051 yihY; YihY family protein K07058 K07058; membrane protein D RATSFB_0015 phnB; phnB protein K04750 phnB; PhnB protein D RATSFB_0285 integral membrane protein K08974 K08974; putative membrane protein C 99997 Function unknown D RATSFB_0722 heme biosynthesis K06871 K06871; uncharacterized protein D RATSFB_0490 alpha/beta family hydrolase K06889 K06889; uncharacterized protein D RATSFB_0820 sodium:dicarboxylate symporter family protein K06956 K06956; uncharacterized protein D RATSFB_1241 tet; tetracycline resistance protein K06962 K06962; uncharacterized protein D RATSFB_0499 putative zinc-dependent metalloprotease K06973 K06973; uncharacterized protein D RATSFB_0742 putative permease K07089 K07089; uncharacterized protein D RATSFB_0736 phosphoesterase, putative K07095 K07095; uncharacterized protein D RATSFB_1165 Ser/Thr protein phosphatase family protein K07099 K07099; uncharacterized protein D RATSFB_1309 radical SAM protein, TIGR01212 family K07139 K07139; uncharacterized protein D RATSFB_0305 hypothetical protein K07149 K07149; uncharacterized protein D RATSFB_1344 putative toxin-antitoxin system, toxin component K08998 K08998; uncharacterized protein D RATSFB_0662 hypothetical protein K09704 K09704; uncharacterized protein D RATSFB_0303 hypothetical protein K09770 K09770; uncharacterized protein D RATSFB_0563 putative DNA-binding protein K09787 K09787; uncharacterized protein D RATSFB_0322 hypothetical protein K09861 K09861; uncharacterized protein D RATSFB_0545 alpha3-beta1 integrin-binding protein K09963 K09963; uncharacterized protein D RATSFB_0337 hypothetical protein K07584 ysxB; uncharacterized protein D RATSFB_0612 ylxR; cytosolic protein YlxR family protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 22, 2024