+D GENES KO
#
KEGG Orthology (KO) - Aliarcobacter trophiarum
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:atp00010]
D ATR_1516 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ATR_0880 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D ATR_1725 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ATR_0277 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D ATR_0279 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ATR_0115 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ATR_0278 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D ATR_1574 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D ATR_1520 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ATR_0186 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ATR_0796 aceE; pyruvate dehydrogenase multienzyme complex, E1 component pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D ATR_0795 aceF; pyruvate dehydrogenase multienzyme complex, E2 component dihydrolipoyl transacetylase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ATR_1078 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D ATR_1079 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D ATR_1615 aldB; aldehyde dehydrogenase B K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D ATR_1698 acyl-CoA synthetase (AMP-forming) / AMP-acid ligase II (CitE domain) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D ATR_1514 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D ATR_0875 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:atp00020]
D ATR_0361 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D ATR_1246 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D ATR_1032 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ATR_1078 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D ATR_1079 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D ATR_1080 oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D ATR_1077 oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D ATR_0351 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D ATR_0350 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D ATR_0352 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D ATR_1701 fumA; fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D ATR_1033 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ATR_1481 mqo; malate:quinone-oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D ATR_0674 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D ATR_0223 pyruvate/oxaloacetate carboxyltransferase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D ATR_0875 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D ATR_0796 aceE; pyruvate dehydrogenase multienzyme complex, E1 component pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D ATR_0795 aceF; pyruvate dehydrogenase multienzyme complex, E2 component dihydrolipoyl transacetylase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:atp00030]
D ATR_1516 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ATR_0895 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D ATR_0216 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D ATR_0178 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D ATR_1550 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D ATR_1514 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D ATR_1512 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D ATR_1725 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ATR_0880 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:atp00040]
D ATR_1515 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ATR_0895 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D ATR_1039 putative aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:atp00051]
D ATR_1514 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D ATR_1039 putative aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D ATR_0880 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D ATR_1725 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ATR_0277 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D ATR_1550 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:atp00052]
D ATR_1426 UDP-N-acetylglucosamine 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ATR_1437 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ATR_1515 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ATR_1514 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism [PATH:atp00053]
D ATR_1428 HpcH/HpaI aldolase / citrate lyase family protein K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
C 00500 Starch and sucrose metabolism [PATH:atp00500]
D ATR_1515 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ATR_1514 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D ATR_1516 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:atp00520]
D ATR_1276 glycosyl hydrolase, family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D ATR_1535 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D ATR_0138 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D ATR_1803 glmU; fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D ATR_0487 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D ATR_1867 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D ATR_1359 dTDP-4-amino-4,6-dideoxygalactose transaminase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D ATR_1416 NDP-sugar epimerase, putative UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D ATR_1812 legG; GDP-2,4-diacetamido-2,4, 6-trideoxy-alpha-D-glucopyranose hydrolase / 2-epimerase K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D ATR_1813 N-acetylneuraminate synthase family protein, putative legionaminic acid synthase LegI K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D ATR_1810 acylneuraminate cytidylyltransferase family protein K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D ATR_1514 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D ATR_1515 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ATR_1426 UDP-N-acetylglucosamine 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ATR_1437 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ATR_1516 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ATR_1815 aminotransferase, DegT/DnrJ/EryC1/StrS family K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00620 Pyruvate metabolism [PATH:atp00620]
D ATR_1698 acyl-CoA synthetase (AMP-forming) / AMP-acid ligase II (CitE domain) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D ATR_1078 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D ATR_1079 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D ATR_0796 aceE; pyruvate dehydrogenase multienzyme complex, E1 component pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D ATR_0795 aceF; pyruvate dehydrogenase multienzyme complex, E2 component dihydrolipoyl transacetylase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ATR_1502 ackA1; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ATR_1504 ackA2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ATR_1503 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ATR_0186 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ATR_1743 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D ATR_0049 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D ATR_0048 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D ATR_1533 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D ATR_1615 aldB; aldehyde dehydrogenase B K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D ATR_0971 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D ATR_1233 maeA; NAD-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D ATR_0674 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D ATR_0223 pyruvate/oxaloacetate carboxyltransferase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D ATR_1033 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ATR_1481 mqo; malate:quinone-oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D ATR_1701 fumA; fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D ATR_0351 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D ATR_0350 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D ATR_0352 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D ATR_0875 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D ATR_0424 leuAII; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D ATR_1526 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:atp00630]
D ATR_1698 acyl-CoA synthetase (AMP-forming) / AMP-acid ligase II (CitE domain) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D ATR_1033 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ATR_0361 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D ATR_1246 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D ATR_1699 enoyl-CoA hydratase K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148]
D ATR_0490 glycolate oxidase, subunit GlcD-related protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D ATR_1264 anaerobic glycerol-3-phosphate dehydrogenase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D ATR_0438 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
D ATR_1935 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D ATR_0940 phosphoglycolate phosphatase-like HAD superfamily hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D ATR_0097 HAD superfamily hydrolase, probable phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D ATR_1450 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ATR_0786 glyA2; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ATR_1366 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ATR_1114 fdhN; formate dehydrogenase N, alpha subunit, selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D ATR_1113 fdhGIII; formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D ATR_1112 fdhO; formate dehydrogenase N, cytochrome b-556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D ATR_1232 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:atp00640]
D ATR_1698 acyl-CoA synthetase (AMP-forming) / AMP-acid ligase II (CitE domain) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D ATR_1502 ackA1; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ATR_1504 ackA2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ATR_1503 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ATR_0054 quinone oxidoreductase, YhdH/YhfP family K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D ATR_1743 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D ATR_0049 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D ATR_0048 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D ATR_1533 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D ATR_0253 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D ATR_0252 acnD; [Fe-S] cluster-dependent 2-methylisocitrate dehydratase K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117]
D ATR_0251 prpF; aconitate isomerase K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-]
D ATR_1246 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D ATR_0254 prpB; 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:atp00650]
D ATR_0351 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D ATR_0350 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D ATR_0352 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D ATR_1078 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D ATR_1079 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D ATR_1934 als; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ATR_0993 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ATR_0992 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:atp00660]
D ATR_1934 als; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ATR_0993 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ATR_0992 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ATR_1699 enoyl-CoA hydratase K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148]
D ATR_0249 leuC; isopropylmalate isomerase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D ATR_0828 leuD; isopropylmalate isomerase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D ATR_0829 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:atp00562]
D ATR_1536 suhB; inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D ATR_0501 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D ATR_0277 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:atp00190]
D ATR_0366 nuoA; NADH:quinone oxidoreductase I, membrane subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D ATR_0365 nuoB; NADH:quinone oxidoreductase I, chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D ATR_0364 nuoCD; NADH:quinone oxidoreductase I, fused chains C and D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D ATR_0363 nuoE; NADH:quinone oxidoreductase I, chain E (thioredoxin-like [2Fe-2S] ferredoxin family) K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D ATR_1869 NADH:quinone oxidoreductase I, chain G-like protein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D ATR_0362 nuoF; NADH:quinone oxidoreductase I, NADH-binding chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D ATR_0360 nuoG; NADH:quinone oxidoreductase I, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D ATR_0359 nuoH; NADH:quinone oxidoreductase I, membrane subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D ATR_0358 nuoI; NADH:quinone oxidoreductase I, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D ATR_0357 nuoJ; NADH:quinone oxidoreductase I, membrane subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D ATR_0356 nuoK; NADH:quinone oxidoreductase I, membrane subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D ATR_0355 nuoL; NADH:quinone oxidoreductase I, membrane subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D ATR_0354 nuoM; NADH:quinone oxidoreductase I, membrane subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D ATR_0353 nuoN; NADH:quinone oxidoreductase I, membrane subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D ATR_0351 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D ATR_0350 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D ATR_0352 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D ATR_1732 petA; ubiquinol cytochrome c oxidoreductase PetABC, [2Fe-2S] subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D ATR_1733 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D ATR_1734 petC; ubiquinol cytochrome c oxidoreductase PetABC, membrane-bound cytochrome c subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D ATR_0322 ccoN; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D ATR_0323 ccoO; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D ATR_0324 ccoQ; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D ATR_0325 ccoP; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D ATR_1034 cccA2; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D ATR_0552 cccA1; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D ATR_0405 atpA; ATP synthase, F1 complex, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D ATR_0407 atpD; ATP synthase, F1 complex, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D ATR_0406 atpG; ATP synthase, F1 complex, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D ATR_0404 atpH; ATP synthase, F1 complex, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D ATR_0408 atpC; ATP synthase, F1 complex, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D ATR_1727 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D ATR_0402 atpF'; ATP synthase, F0 complex, b' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D ATR_0403 atpF; ATP synthase, F0 complex, b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D ATR_0621 atpE; ATP synthase, F0 complex, c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D ATR_0421 ppaB; inorganic pyrophosphatase, manganese-dependent K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
D ATR_0385 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ATR_0581 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ATR_0582 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms [PATH:atp00710]
D ATR_0278 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D ATR_0279 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ATR_0115 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ATR_1725 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ATR_0880 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D ATR_0216 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D ATR_1550 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D ATR_0277 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D ATR_0895 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D ATR_0875 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D ATR_1233 maeA; NAD-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D ATR_1033 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Carbon fixation pathways in prokaryotes [PATH:atp00720]
D ATR_0674 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D ATR_0223 pyruvate/oxaloacetate carboxyltransferase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D ATR_1033 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ATR_1701 fumA; fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D ATR_0351 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D ATR_0350 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D ATR_0352 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D ATR_1078 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D ATR_1079 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D ATR_1080 oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D ATR_1077 oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D ATR_1032 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D ATR_1246 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D ATR_1743 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D ATR_0049 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D ATR_0048 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D ATR_1533 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D ATR_1699 enoyl-CoA hydratase K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148]
D ATR_1552 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase / 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D ATR_1503 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ATR_1502 ackA1; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ATR_1504 ackA2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ATR_1698 acyl-CoA synthetase (AMP-forming) / AMP-acid ligase II (CitE domain) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:atp00680]
D ATR_1114 fdhN; formate dehydrogenase N, alpha subunit, selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D ATR_1113 fdhGIII; formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D ATR_1112 fdhO; formate dehydrogenase N, cytochrome b-556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D ATR_0786 glyA2; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ATR_1366 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ATR_1520 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ATR_1033 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ATR_1725 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ATR_0880 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D ATR_1936 molybdopterin-containing oxidoreductase II, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D ATR_1502 ackA1; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ATR_1504 ackA2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ATR_1503 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ATR_1698 acyl-CoA synthetase (AMP-forming) / AMP-acid ligase II (CitE domain) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D ATR_1574 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D ATR_1750 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ATR_0177 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:atp00910]
D ATR_1712 napA; periplasmic nitrate reductase NapAB, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D ATR_1715 napB; periplasmic nitrate reductase NapAB, small subunit, periplasmic diheme cytochrome c550 protein K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D ATR_0642 nitrite reductase NirS, cytochrome cd1 type K15864 nirS; nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
D ATR_0643 nitric oxide reductase, large subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D ATR_0644 cytochrome c, putative nitric oxide reductase small subunit K02305 norC; nitric oxide reductase subunit C
D ATR_0927 nosZ; nitrous oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D ATR_0477 npd; nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D ATR_0338 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D ATR_1450 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ATR_0182 canB; beta carbonic anhydrase, clade B K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:atp00920]
D ATR_1966 sbp; sulfate ABC transporter, sulfate binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D ATR_1962 cysT; sulfate ABC transporter CysATW, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D ATR_1961 cysW; sulfate ABC transporter CysATW, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D ATR_1960 cysA; sulfate ABC transporter CysATW, ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D ATR_1941 cysN; sulfate adenylyltransferase, GTPase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ATR_1942 cysD; sulfate adenylyltransferase, subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ATR_1761 nrnA; nanoRNase / pAp phosphatase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D ATR_1943 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D ATR_1129 soxA; sulfur oxidation protein SoxXA, diheme cytochrome c subunit K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D ATR_1126 soxX; sulfur oxidation protein SoxXA, monoheme cytochrome c subunit K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D ATR_1127 soxY; sulfur oxidation protein SoxYZ, sulfur covalently binding protein K17226 soxY; sulfur-oxidizing protein SoxY
D ATR_1128 soxZ; sulfur oxidation protein SoxYZ, sulfur compound chelating protein K17227 soxZ; sulfur-oxidizing protein SoxZ
D ATR_1131 soxB; sulfur oxidation protein, thiosulfate hydrolase K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20]
D ATR_1124 soxC; sulfur oxidation protein SoxCD, sulfur dehydrogenase subunit K17225 soxC; sulfane dehydrogenase subunit SoxC
D ATR_1125 soxD; sulfur oxidation protein SoxCD, diheme cytochrome c subunit K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6]
D ATR_0373 nirA; ferredoxin-nitrite reductase K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D ATR_0247 putative NADH dehydrogenase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D ATR_0804 flavocytochrome c sulfide dehydrogenase, flavin-binding K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3]
D ATR_0805 cytochrome c K17230 fccA; cytochrome subunit of sulfide dehydrogenase
D ATR_1341 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D ATR_1945 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D ATR_0814 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D ATR_1549 Cys/Met metabolism PLP-dependent enzyme K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:atp00061]
D ATR_1743 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D ATR_0049 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D ATR_0048 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D ATR_1533 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D ATR_1217 acpP2; acyl carrier protein K02078 acpP; acyl carrier protein
D ATR_1205 acpP1; acyl carrier protein K02078 acpP; acyl carrier protein
D ATR_1741 acpP3; acyl carrier protein K02078 acpP; acyl carrier protein
D ATR_0416 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D ATR_0346 fabH; beta-ketoacyl-[acp] synthase III (KASIII) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D ATR_1196 3-oxoacyl-[acp] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D ATR_1203 beta-ketoacyl-[acp] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D ATR_1742 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D ATR_1218 beta-ketoacyl-[acp] synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D ATR_1210 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ATR_1740 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ATR_1889 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D ATR_0276 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:atp00121]
D ATR_1094 short-chain dehydrogenase/reductase K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:atp00561]
D ATR_0345 plsX; acyl phosphate synthase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D ATR_1764 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D ATR_0286 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D ATR_0507 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:atp00564]
D ATR_0053 gpsA; glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D ATR_1764 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D ATR_0286 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D ATR_0513 glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
D ATR_0507 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D ATR_0894 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D ATR_0237 cdsA; CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D ATR_0996 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D ATR_0258 psd; phosphatidylserine decarboxylase, proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D ATR_1095 pgsA; phosphatidylglycerophosphate synthase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D ATR_0141 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
C 00565 Ether lipid metabolism [PATH:atp00565]
D ATR_0894 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D ATR_0894 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D ATR_0894 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:atp00592]
D ATR_0894 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:atp00230]
D ATR_1514 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D ATR_1512 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D ATR_0315 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D ATR_0986 purD; phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D ATR_1974 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D ATR_0376 purL; phosphoribosylformylglycinamidine synthase PurLQS, PurL subunit K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D ATR_0289 purS; phosphoribosylformylglycinamidine synthase PurLQS, PurS subunit K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D ATR_0288 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D ATR_0114 purM; phosphoribosylformylglycinamide cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D ATR_1676 purE2; 5-aminoimidazole ribonucleotide (AIR) carboxylase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D ATR_0290 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D ATR_0059 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D ATR_0377 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D ATR_1546 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D ATR_0103 umpG; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D ATR_1306 DUF1255 domain-containing protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D ATR_1345 DUF1255 domain-containing protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D ATR_1234 multi-copper polyphenol oxidoreductase laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D ATR_0839 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D ATR_0342 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D ATR_0664 putative dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D ATR_1245 putative nucleotide phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D ATR_0907 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D ATR_1471 gmk; deoxyguanylate kinase / guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D ATR_0058 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ATR_0057 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D ATR_1021 nrdD2; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D ATR_0475 spoT; ppGpp synthetase / guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D ATR_0995 exopolyphosphatase, Ppx/GppA family K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D ATR_0503 gppA; guanosine-5'-triphosphate, 3'-diphosphate pyrophosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D ATR_0914 CHASE2 sensor-containing adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D ATR_0123 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D ATR_1407 metallophosphoesterase (YmdB domain) K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D ATR_0781 adkII; adenylate kinase (lid-domain-containing Adk) K00939 adk; adenylate kinase [EC:2.7.4.3]
D ATR_0782 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D ATR_0752 histidine triad nucleotide-binding protein, Fhit branch K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D ATR_1941 cysN; sulfate adenylyltransferase, GTPase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ATR_1942 cysD; sulfate adenylyltransferase, subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:atp00240]
D ATR_0816 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D ATR_0125 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D ATR_0134 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D ATR_0203 pyrC; dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D ATR_1091 pyrD; dihydroorotate dehydrogenase 2 K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D ATR_1905 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D ATR_1453 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D ATR_0473 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D ATR_0342 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D ATR_0269 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D ATR_0109 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D ATR_0103 umpG; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D ATR_1306 DUF1255 domain-containing protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D ATR_1345 DUF1255 domain-containing protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D ATR_1407 metallophosphoesterase (YmdB domain) K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D ATR_1021 nrdD2; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D ATR_0058 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ATR_0057 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D ATR_0050 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D ATR_1338 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D ATR_1971 thy; thymidylate synthase complementing protein K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:atp00250]
D ATR_0912 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D ATR_0908 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D ATR_0419 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D ATR_0044 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D ATR_1175 carbon-nitrogen hydrolase family protein K13566 NIT2; omega-amidase [EC:3.5.1.3]
D ATR_0418 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D ATR_0849 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D ATR_0684 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D ATR_0123 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D ATR_0059 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D ATR_0134 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D ATR_0338 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D ATR_1450 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ATR_0816 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D ATR_0125 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D ATR_0288 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D ATR_1535 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D ATR_0315 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:atp00260]
D ATR_1015 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ATR_0538 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ATR_0061 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D ATR_1757 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D ATR_1731 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D ATR_0786 glyA2; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ATR_1366 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ATR_1574 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D ATR_1750 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ATR_0177 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ATR_0996 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D ATR_1726 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D ATR_0843 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D ATR_0022 trpB1; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D ATR_1545 trpB2; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:atp00270]
D ATR_1341 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D ATR_1945 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D ATR_1548 metC; cystathionine-beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ATR_1139 putative C-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ATR_0083 metH; cobalamin-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D ATR_1628 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D ATR_1534 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D ATR_0113 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D ATR_0417 pfs; multifunctional 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase / 6-amino-6-deoxyfutalosine hydrolase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D ATR_1234 multi-copper polyphenol oxidoreductase laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D ATR_0705 type IIP restriction/modification system, cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ATR_0079 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D ATR_1618 acd; 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D ATR_1015 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ATR_0538 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ATR_0061 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D ATR_0814 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D ATR_1549 Cys/Met metabolism PLP-dependent enzyme K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D ATR_1947 metY; O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D ATR_0085 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ATR_0912 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D ATR_1033 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ATR_1750 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:atp00280]
D ATR_0085 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:atp00290]
D ATR_1726 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D ATR_0249 leuC; isopropylmalate isomerase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D ATR_0828 leuD; isopropylmalate isomerase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D ATR_0829 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D ATR_1934 als; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ATR_0993 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ATR_0992 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ATR_1774 ilvC; acetohydroxy acid isomeroreductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D ATR_0303 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D ATR_0085 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ATR_0424 leuAII; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D ATR_1526 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:atp00300]
D ATR_0061 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D ATR_1015 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ATR_0538 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ATR_1093 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D ATR_0314 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D ATR_1148 tetrahydrodipicolinate N-succinyltransferase domain-containing protein (N-terminal, middle domains) K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D ATR_0136 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D ATR_0275 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D ATR_1025 ddh; meso-diaminopimelate D-dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16]
D ATR_1623 PLP-dependent aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D ATR_1476 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D ATR_0751 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00220 Arginine biosynthesis [PATH:atp00220]
D ATR_1022 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D ATR_0849 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D ATR_0684 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D ATR_0288 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D ATR_1450 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ATR_0816 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D ATR_0125 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D ATR_0338 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D ATR_0912 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D ATR_1322 acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D ATR_0535 argJ; bifunctional ornithine acetyltransferase / N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D ATR_1730 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D ATR_0898 argCII; N-acetyl-gamma-glutamylphosphate reductase, uncommon form K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D ATR_0136 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:atp00330]
D ATR_1340 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D ATR_0427 speB; arginase/agmatinase/formiminoglutamate hydrolase, arginase family K01480 speB; agmatinase [EC:3.5.3.11]
D ATR_0113 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D ATR_0583 nspC; carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D ATR_0667 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D ATR_0395 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D ATR_1171 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D ATR_0912 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:atp00340]
D ATR_1607 hisG(S); ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D ATR_0088 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D ATR_1469 hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D ATR_1468 hisH; imidazole glycerol phosphate synthase HisFH, HisH subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D ATR_0035 hisF; imidazole glycerol phosphate synthase HisFH, HisF subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D ATR_1327 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D ATR_0273 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ATR_1449 hisJ; histidinol-phosphate phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D ATR_1603 hisD; histidinal dehydrogenase / histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D ATR_1209 aromatic amino acid lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
C 00350 Tyrosine metabolism [PATH:atp00350]
D ATR_0912 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D ATR_0273 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ATR_1949 tnaA; tryptophanase K01668 E4.1.99.2; tyrosine phenol-lyase [EC:4.1.99.2]
C 00360 Phenylalanine metabolism [PATH:atp00360]
D ATR_0912 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D ATR_0273 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ATR_1318 DRE-TIM metallolyase superfamily protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00380 Tryptophan metabolism [PATH:atp00380]
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ATR_0438 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:atp00400]
D ATR_0179 aroG; 2-dehydro-3-deoxyphosphoheptonate aldolase (DAHP synthetase, class II) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D ATR_0951 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D ATR_1507 aroD; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D ATR_1236 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D ATR_1604 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D ATR_1747 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D ATR_0387 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D ATR_1368 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D ATR_1831 trpG; anthranilate phosphoribosyltransferase / anthranilate synthase component II, TrpG subunit K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D ATR_1272 trpD; anthranilate phosphoribosyltransferase / anthranilate synthase component II, TrpD subunit K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D ATR_0896 trpF; phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D ATR_1073 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D ATR_0843 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D ATR_0022 trpB1; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D ATR_1545 trpB2; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D ATR_0274 pheA; chorismate mutase / prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D ATR_0889 tyrA; chorismate mutase / prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D ATR_0912 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D ATR_0273 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:atp00410]
D ATR_1400 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D ATR_0168 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:atp00430]
D ATR_1503 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ATR_1502 ackA1; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ATR_1504 ackA2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:atp00450]
D ATR_1549 Cys/Met metabolism PLP-dependent enzyme K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D ATR_1548 metC; cystathionine-beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ATR_1139 putative C-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ATR_0083 metH; cobalamin-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D ATR_1628 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D ATR_0677 sufS; cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D ATR_0313 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D ATR_1941 cysN; sulfate adenylyltransferase, GTPase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ATR_1942 cysD; sulfate adenylyltransferase, subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ATR_1121 selD; selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D ATR_0892 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D ATR_0878 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:atp00460]
D ATR_0419 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D ATR_0786 glyA2; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ATR_1366 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:atp00470]
D ATR_1141 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D ATR_0749 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D ATR_1178 dltA; D-alanine--[D-alanyl carrier protein] ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D ATR_0288 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D ATR_0336 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D ATR_1572 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D ATR_0275 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:atp00480]
D ATR_1543 leucyl aminopeptidase, peptidase M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D ATR_0964 pepD; peptidase D K01270 pepD; dipeptidase D [EC:3.4.13.-]
D ATR_1032 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D ATR_0113 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:atp00540]
D ATR_1888 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D ATR_1759 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D ATR_0991 lpxD; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D ATR_0686 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D ATR_1890 lpxB; lipid A disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D ATR_1050 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D ATR_0038 kpsF; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D ATR_0485 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D ATR_1326 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D ATR_1269 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D ATR_1671 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D ATR_0505 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D ATR_0525 phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D ATR_0528 gmhA; sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D ATR_0529 waaE; D,D-heptose 1-phosphate adenosyltransferase / D,D-heptose 7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D ATR_0531 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D ATR_0530 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D ATR_0504 waaC; heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D ATR_0524 waaF; heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D ATR_0514 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:atp00541]
D ATR_1515 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ATR_1426 UDP-N-acetylglucosamine 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ATR_1437 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ATR_0509 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ATR_0510 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D ATR_1815 aminotransferase, DegT/DnrJ/EryC1/StrS family K13010 per; perosamine synthetase [EC:2.6.1.102]
D ATR_1803 glmU; fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D ATR_1416 NDP-sugar epimerase, putative UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D ATR_1359 dTDP-4-amino-4,6-dideoxygalactose transaminase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
C 00550 Peptidoglycan biosynthesis [PATH:atp00550]
D ATR_0487 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D ATR_1867 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D ATR_1780 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D ATR_1572 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D ATR_1476 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D ATR_0749 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D ATR_0751 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D ATR_1801 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D ATR_1445 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ATR_1573 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D ATR_0611 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D ATR_1576 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D ATR_1294 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D ATR_0613 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D ATR_0081 D-alanyl-D-alanine carboxypeptidase, peptidase S11 family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:atp00552]
D ATR_1445 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ATR_1178 dltA; D-alanine--[D-alanyl carrier protein] ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D ATR_1179 dltB; peptidoglycan:teichoic acid D-alanyltransferase K03739 dltB; membrane protein involved in D-alanine export
D ATR_1181 dltD; D-alanyl carrier protein:peptidoglycan D-alanyltransferase K03740 dltD; D-alanine transfer protein
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:atp00543]
D ATR_0919 membrane-bound O-acyl transferase, MBOAT family K19294 algI; alginate O-acetyltransferase complex protein AlgI
D ATR_1431 membrane-bound O-acyl transferase, MBOAT family K19294 algI; alginate O-acetyltransferase complex protein AlgI
D ATR_1341 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:atp00730]
D ATR_0145 thiC; HMP-P synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D ATR_0095 thiD; hydroxymethylpyrimidine kinase / phosphohydroxymethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D ATR_1110 NifS/IscS family cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ATR_0606 thiI; tRNA uridine 4-sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D ATR_0272 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D ATR_0229 thiG; 1-deoxy-D-xylulose 5-phosphate:thiol sulfurtransferase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D ATR_0094 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D ATR_1728 thiamine phosphate synthase (TMP-TENI domain) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D ATR_1532 thiE; thiamine phosphate synthase (TMP-TENI domain) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D ATR_0744 thiL; thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D ATR_0781 adkII; adenylate kinase (lid-domain-containing Adk) K00939 adk; adenylate kinase [EC:2.7.4.3]
D ATR_0782 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D ATR_0093 thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:atp00740]
D ATR_0820 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D ATR_1237 ribAB; bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase / GTP cyclohydrolase II protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D ATR_1752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D ATR_1451 ribH; 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, beta subunit) K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D ATR_1884 ribE; 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, alpha subunit) K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D ATR_0494 ribF; bifunctional riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D ATR_0094 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D ATR_1336 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:atp00750]
D ATR_0448 pdxH; pyridoxine 5'-phosphate oxidase / pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D ATR_1370 pdxA; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D ATR_1369 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D ATR_1731 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:atp00760]
D ATR_0908 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D ATR_1763 nadA; quinolinate synthase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D ATR_1762 nadC; quinolinate phosphoribosyltransferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D ATR_0103 umpG; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D ATR_0280 nadD; nicotinate-mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D ATR_1052 nadE; NAD synthetase, NH3-dependent K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D ATR_1482 pncC; NMN amidohydrolase K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D ATR_1681 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:atp00770]
D ATR_1934 als; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ATR_0993 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ATR_0992 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ATR_1774 ilvC; acetohydroxy acid isomeroreductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D ATR_0303 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D ATR_0842 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D ATR_0168 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D ATR_1606 coaX; pantothenate kinase, type III K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D ATR_1802 dfp; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D ATR_1337 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D ATR_0112 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D ATR_0170 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D ATR_0085 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ATR_1400 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:atp00780]
D ATR_1902 SAM-dependent methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D ATR_1203 beta-ketoacyl-[acp] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D ATR_1742 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D ATR_1218 beta-ketoacyl-[acp] synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D ATR_1210 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ATR_1740 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ATR_1889 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D ATR_0276 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D ATR_0183 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D ATR_0379 bioA; adenosylmethionine--8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D ATR_1694 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D ATR_1865 bioB; biotin synthetase K01012 bioB; biotin synthase [EC:2.8.1.6]
D ATR_0399 birA; biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:atp00785]
D ATR_0797 lplA; lipoate--protein ligase A K23734 lipM; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D ATR_0798 lipA; lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ATR_0796 aceE; pyruvate dehydrogenase multienzyme complex, E1 component pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D ATR_0795 aceF; pyruvate dehydrogenase multienzyme complex, E2 component dihydrolipoyl transacetylase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00790 Folate biosynthesis [PATH:atp00790]
D ATR_1817 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D ATR_1673 Nif3-like dinuclear metal center protein, putative GTP cyclohydrolase K22391 E3.5.4.16; GTP cyclohydrolase I [EC:3.5.4.16]
D ATR_1765 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D ATR_1509 folK; 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D ATR_1018 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D ATR_1585 folC; bifunctional folypolyglutamate synthetase / dihydrofolate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D ATR_0820 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D ATR_1237 ribAB; bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase / GTP cyclohydrolase II protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D ATR_0133 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D ATR_0132 branched-chain amino acid aminotransferase, possible 4-amino-4-deoxychorismate lyase PabC K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D ATR_1738 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D ATR_1739 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D ATR_1737 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D ATR_0004 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D ATR_1708 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D ATR_0100 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D ATR_1448 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D ATR_0956 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D ATR_1002 moeA1; molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D ATR_1109 moeA2; molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D ATR_0248 mobA; molybdenum cofactor guanylyltransferase protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:atp00670]
D ATR_1552 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase / 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D ATR_0786 glyA2; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ATR_1366 glyA1; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ATR_1974 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D ATR_0377 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D ATR_0396 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D ATR_0083 metH; cobalamin-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D ATR_1971 thy; thymidylate synthase complementing protein K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D ATR_1232 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D ATR_0853 fau; 5-formyltetrahydrofolate cycloligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:atp00860]
D ATR_0885 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ATR_0031 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ATR_1600 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D ATR_1305 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D ATR_0819 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D ATR_0333 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D ATR_0987 hemD; uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D ATR_0540 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D ATR_1023 hemN2; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D ATR_0041 UPF0093 domain-containing membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D ATR_0627 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D ATR_0636 cysG; uroporphyrinogen-III (C7)-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D ATR_0634 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D ATR_0633 putative siroheme decarboxylase K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D ATR_0641 cytochrome d1 heme domain protein, putative NirN K24867 nirN; dihydro-heme d1 dehydrogenase
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:atp00130]
D ATR_0069 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D ATR_0367 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D ATR_1336 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D ATR_1404 ubiE; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D ATR_1446 mqnA2; 6-amino-6-deoxyfutalosine synthase K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D ATR_0180 menaquinone biosynthesis protein, SCO4494 family K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D ATR_1506 metallo-dependent hydrolase, subgroup D K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40]
D ATR_0417 pfs; multifunctional 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase / 6-amino-6-deoxyfutalosine hydrolase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D ATR_0887 mqnC; dehypoxanthinylfutalosine cyclase K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D ATR_1868 mqnD; 1,4-dihydroxy-6-naphthoate synthase K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:atp00900]
D ATR_0272 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D ATR_0236 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D ATR_0143 ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D ATR_0320 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D ATR_1362 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D ATR_1748 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D ATR_1336 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D ATR_1398 ispA; geranyl diphosphate synthase / farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D ATR_1601 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D ATR_1801 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D ATR_0216 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
D ATR_1136 MBL fold metallohydrolase K05555 actIV; cyclase [EC:4.-.-.-]
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:atp00523]
D ATR_0509 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ATR_0510 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D ATR_0510 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:atp00332]
D ATR_0395 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D ATR_1171 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:atp00261]
D ATR_1941 cysN; sulfate adenylyltransferase, GTPase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ATR_1942 cysD; sulfate adenylyltransferase, subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ATR_1015 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ATR_0538 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ATR_1093 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D ATR_0314 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:atp00521]
D ATR_1514 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D ATR_1536 suhB; inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D ATR_0501 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D ATR_0509 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ATR_0510 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:atp00525]
D ATR_0509 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ATR_0510 dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:atp00401]
D ATR_0889 tyrA; chorismate mutase / prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D ATR_0912 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D ATR_0273 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D ATR_1368 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D ATR_1831 trpG; anthranilate phosphoribosyltransferase / anthranilate synthase component II, TrpG subunit K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D ATR_0416 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D ATR_1210 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ATR_1740 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ATR_0276 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D ATR_1217 acpP2; acyl carrier protein K02078 acpP; acyl carrier protein
D ATR_1205 acpP1; acyl carrier protein K02078 acpP; acyl carrier protein
D ATR_1741 acpP3; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:atp00999]
D ATR_1534 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D ATR_1236 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:atp00362]
D ATR_1318 DRE-TIM metallolyase superfamily protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D ATR_1071 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00627 Aminobenzoate degradation
D ATR_1336 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation [PATH:atp00622]
D ATR_1071 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D ATR_1318 DRE-TIM metallolyase superfamily protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:atp00621]
D ATR_1071 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D ATR_1318 DRE-TIM metallolyase superfamily protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:atp03020]
D ATR_1558 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D ATR_1557 rpoC; DNA-directed RNA polymerase, beta' subunit K13797 rpoBC; DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6]
D ATR_0836 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D ATR_0474 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:atp03010]
D ATR_1749 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D ATR_1475 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D ATR_0761 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D ATR_0835 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D ATR_0772 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D ATR_1770 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D ATR_1683 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D ATR_0769 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D ATR_0148 rpsI2; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D ATR_0091 rpsI1; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D ATR_0754 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D ATR_0834 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D ATR_1684 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D ATR_0833 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D ATR_0768 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D ATR_1707 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D ATR_1668 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D ATR_0764 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D ATR_1768 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D ATR_0759 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D ATR_0139 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D ATR_0099 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D ATR_1561 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D ATR_0758 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D ATR_0755 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D ATR_0756 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D ATR_0767 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D ATR_0770 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D ATR_1559 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D ATR_1334 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D ATR_1560 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D ATR_1562 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D ATR_0149 rplM2; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D ATR_0090 rplM1; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D ATR_0765 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D ATR_0773 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D ATR_0762 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D ATR_0837 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D ATR_0771 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D ATR_1625 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D ATR_0245 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D ATR_0392 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D ATR_0760 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D ATR_0757 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D ATR_0766 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D ATR_0482 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D ATR_0393 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D ATR_0533 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D ATR_0763 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D ATR_0066 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D ATR_0344 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D ATR_1566 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D ATR_1381 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D ATR_0244 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D ATR_0832 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D ATR_0543 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1463 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1690 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1828 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1899 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1687 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_0546 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_1825 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_1896 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_1460 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_0547 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1686 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1824 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1895 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1459 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:atp00970]
D ATR_0545 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ATR_1897 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ATR_1461 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ATR_1688 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ATR_1826 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ATR_0070 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ATR_0226 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ATR_0541 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D ATR_0542 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D ATR_1486 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D ATR_1490 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D ATR_0300 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D ATR_1542 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D ATR_0454 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D ATR_0818 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ATR_1484 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ATR_1488 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ATR_0224 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ATR_1538 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ATR_1568 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ATR_0227 tRNA-His K14226 tRNA-His; tRNA His
D ATR_1827 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ATR_0544 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ATR_1462 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ATR_1898 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ATR_1689 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ATR_0225 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ATR_1041 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ATR_1184 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ATR_0302 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ATR_1483 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D ATR_1487 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D ATR_1540 tRNA-Met K14230 tRNA-Met; tRNA Met
D ATR_1455 tRNA-Met K14230 tRNA-Met; tRNA Met
D ATR_1539 tRNA-Met K14230 tRNA-Met; tRNA Met
D ATR_1571 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D ATR_0452 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D ATR_0228 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D ATR_1454 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ATR_0301 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ATR_1541 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ATR_1570 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ATR_1565 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D ATR_1569 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D ATR_0453 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D ATR_1489 tRNA-Val K14237 tRNA-Val; tRNA Val
D ATR_1485 tRNA-Val K14237 tRNA-Val; tRNA Val
D ATR_0893 selC; tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D ATR_0885 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ATR_0031 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ATR_0838 gatA; Glu-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D ATR_0052 gatB; Glu-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D ATR_1784 gatC; Glu-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D ATR_0311 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D ATR_0779 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ATR_1674 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D ATR_0825 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D ATR_0242 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D ATR_1721 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D ATR_0892 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D ATR_1786 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D ATR_0878 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D ATR_0396 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D ATR_0659 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D ATR_1587 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ATR_1480 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D ATR_1365 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D ATR_0282 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ATR_1599 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ATR_1339 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ATR_0122 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ATR_1745 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D ATR_1746 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D ATR_0476 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ATR_1613 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:atp03060]
D ATR_0774 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D ATR_1564 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D ATR_1903 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D ATR_1594 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D ATR_1593 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D ATR_1595 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D ATR_1378 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ATR_0961 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ATR_1669 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D ATR_0006 srpB; bacterial signal recognition particle RNA (4.5S RNA) K01983 ffs; SRP RNA
D ATR_0855 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ATR_0283 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D ATR_0284 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D ATR_1059 tatB; twin arginine translocation system, TatB protein K03117 tatB; sec-independent protein translocase protein TatB
D ATR_1058 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
D ATR_1551 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D ATR_0137 lspA; prolipoprotein signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:atp04122]
D ATR_1110 NifS/IscS family cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ATR_1510 mnmA; tRNA U34 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D ATR_1448 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D ATR_1708 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D ATR_1965 ThiS family protein K03636 moaD; sulfur-carrier protein
D ATR_1447 moaD; molybdopterin synthase, small subunit K03636 moaD; sulfur-carrier protein
D ATR_1964 thiFII; ThiS adenylyltransferase (Rhodanese domain) K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D ATR_0793 FeThRed_B, RHOD domain-containing protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D ATR_0100 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D ATR_0956 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D ATR_0606 thiI; tRNA uridine 4-sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D ATR_0185 thiS; thiamine biosynthesis protein K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:atp03018]
D ATR_1014 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D ATR_1520 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ATR_0982 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D ATR_1773 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D ATR_0047 DEAD-box ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D ATR_0339 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D ATR_0852 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D ATR_0037 mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily) K12574 rnj; ribonuclease J [EC:3.1.-.-]
D ATR_1794 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D ATR_1396 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ATR_0385 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ATR_0581 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ATR_0582 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:atp03030]
D ATR_0897 dnaQ1; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ATR_1496 dnaQ2; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ATR_0104 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ATR_0335 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ATR_1017 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ATR_1771 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ATR_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ATR_1361 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D ATR_0720 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D ATR_0390 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D ATR_0726 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101]
D ATR_1769 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D ATR_1317 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D ATR_1383 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D ATR_0864 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:atp03410]
D ATR_0743 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D ATR_1932 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D ATR_0777 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D ATR_0607 xth; exodeoxyribonuclease III (exonuclease III) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D ATR_1894 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D ATR_0108 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D ATR_0864 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:atp03420]
D ATR_1580 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D ATR_0899 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D ATR_0685 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D ATR_1142 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D ATR_0318 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ATR_1122 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ATR_0864 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:atp03430]
D ATR_1523 mutS; DNA mismatch repair ATPase K03555 mutS; DNA mismatch repair protein MutS
D ATR_1029 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2
D ATR_0318 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ATR_1122 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ATR_1403 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D ATR_0815 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D ATR_1056 DEDDh 3'-5' exonuclease domain family protein K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D ATR_0108 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D ATR_1769 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D ATR_0104 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ATR_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ATR_0335 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ATR_1771 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ATR_1017 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ATR_0897 dnaQ1; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ATR_1496 dnaQ2; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ATR_0864 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:atp03440]
D ATR_0108 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D ATR_1769 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D ATR_1065 recR; recombination protein K06187 recR; recombination protein RecR
D ATR_1864 recA; recombinase K03553 recA; recombination protein RecA
D ATR_0748 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D ATR_0841 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D ATR_1975 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D ATR_1729 addA; AddAB recombination complex, helicase AddA K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D ATR_0808 helicase, RecD/TraA family (non-RecBCD) K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D ATR_0104 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ATR_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ATR_0335 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ATR_1771 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ATR_1017 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ATR_0897 dnaQ1; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ATR_1496 dnaQ2; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ATR_1149 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D ATR_1845 putative Rad52/22 family double-strand break repair protein K10873 RAD52; DNA repair and recombination protein RAD52
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:atp02010]
D ATR_1966 sbp; sulfate ABC transporter, sulfate binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D ATR_1962 cysT; sulfate ABC transporter CysATW, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D ATR_1961 cysW; sulfate ABC transporter CysATW, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D ATR_1960 cysA; sulfate ABC transporter CysATW, ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D ATR_0017 modA; molybdenum ABC transporter ModABC, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D ATR_0015 modB; molybdenum ABC transporter ModABC, permease protein K02018 modB; molybdate transport system permease protein
D ATR_0014 modC; molybdenum ABC transporter ModABC, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D ATR_1860 iron(III)/spermidine/putrescine ABC transporter, periplasmic substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D ATR_1861 iron(III)/spermidine/putrescine ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D ATR_1862 iron(III)/spermidine/putrescine ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D ATR_1164 mlaC; lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D ATR_0076 mlaD; lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D ATR_0078 mlaE; lipid asymmetry ABC transporter MlaABCDEF, permease component MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D ATR_0077 mlaF; lipid asymmetry ABC transporter MlaABCDEF, ATPase component MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D ATR_0158 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D ATR_0559 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D ATR_0156 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D ATR_0558 phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D ATR_0155 pstA; phosphate ABC transporter, permease protein (DUF3333 domain) K02038 pstA; phosphate transport system permease protein
D ATR_0557 phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D ATR_0154 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D ATR_0556 phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D ATR_0462 metal ion ABC transporter, periplasmic metal-binding protein K09815 znuA; zinc transport system substrate-binding protein
D ATR_0653 metal ion ABC transporter, membrane protein K09816 znuB; zinc transport system permease protein
D ATR_0652 metal ion ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D ATR_1913 cbiM; cobalt/nickel ECF transporter CbiMNQO, S component CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D ATR_1911 cbiQ; cobalt/nickel ECF transporter CbiMNQO, T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D ATR_1910 cbiO; cobalt/nickel ECF transporter CbiMNQO, A component, ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D ATR_1914 DUF4198 domain-containing protein K10094 cbiK; nickel transport protein
D ATR_1912 cbiN; cobalt/nickel ECF transporter CbiMNQO, S component CbiN K16915 cbiL; nickel transport protein
D ATR_1436 ABC transporter, permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D ATR_1435 ABC transporter, ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]
D ATR_1799 lptF; lipooligosaccharide transport system, ABC transporter permease component LptF K07091 lptF; lipopolysaccharide export system permease protein
D ATR_0480 lptG; lipooligosaccharide transport system, ABC transporter permease component LptG K11720 lptG; lipopolysaccharide export system permease protein
D ATR_1270 lptB; lipooligosaccharide transport system, ABC transporter ATP-binding component LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D ATR_1297 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D ATR_1298 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D ATR_1090 msbA; lipid A export ATP-binding/permease protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D ATR_0872 type I secretion system ATPase/permease, LssB family K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:atp03070]
D ATR_1283 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1291 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1387 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_0498 type II secretion/transformation system, D protein K02453 gspD; general secretion pathway protein D
D ATR_1819 type II secretion/transformation system, F protein K02455 gspF; general secretion pathway protein F
D ATR_1360 type II secretion/transformation system, G protein K02456 gspG; general secretion pathway protein G
D ATR_1820 type II secretion/transformation system, E protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D ATR_1594 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D ATR_1593 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D ATR_1564 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D ATR_1903 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D ATR_0774 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D ATR_1595 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D ATR_1378 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ATR_0961 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ATR_0855 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ATR_1669 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D ATR_0283 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D ATR_0284 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D ATR_1059 tatB; twin arginine translocation system, TatB protein K03117 tatB; sec-independent protein translocase protein TatB
D ATR_1058 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
D ATR_0724 P-type type IV conjugative transfer system, lytic transglycosylase VirB1 K03194 virB1; type IV secretion system protein VirB1
D ATR_0741 putative membrane protein K03197 virB2; type IV secretion system protein VirB2
D ATR_0737 P-type type IV conjugative transfer system protein TrbJ/VirB5 K03200 virB5; type IV secretion system protein VirB5
D ATR_0732 P-type type IV conjugative transfer system translocation pore protein TrbG/VirB9 K03204 virB9; type IV secretion system protein VirB9
D ATR_0735 P-type type IV conjugative transfer system protein TrbL/VirB6 K03201 virB6; type IV secretion system protein VirB6
D ATR_0733 P-type type IV conjugative transfer system protein TrbF/VirB8 K03203 virB8; type IV secretion system protein VirB8
D ATR_0731 P-type type IV conjugative transfer system translocation pore protein TrbI/VirB10 K03195 virB10; type IV secretion system protein VirB10
D ATR_0740 P-type type IV conjugative transfer system protein, fused VirB3/VirB4 (TrbDE) K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D ATR_0730 P-type type IV conjugative transfer system ATPase TrbB/VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D ATR_0729 P-type type IV conjugative transfer system coupling protein TraG/VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:atp02020]
D ATR_0151 phoB; two-component system response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D ATR_0158 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D ATR_0559 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D ATR_0304 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D ATR_0025 putative copper/silver efflux system, membrane fusion protein CusB K07798 cusB; membrane fusion protein, copper/silver efflux system
D ATR_0024 CusA family copper/silver efflux pump K07787 cusA; copper/silver efflux system protein
D ATR_1807 flaA; flagellin K02406 fliC; flagellin
D ATR_1808 flaB; flagellin K02406 fliC; flagellin
D ATR_1589 motA; flagellar motor stator protein K02556 motA; chemotaxis protein MotA
D ATR_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D ATR_1178 dltA; D-alanine--[D-alanyl carrier protein] ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D ATR_1179 dltB; peptidoglycan:teichoic acid D-alanyltransferase K03739 dltB; membrane protein involved in D-alanine export
D ATR_1181 dltD; D-alanyl carrier protein:peptidoglycan D-alanyltransferase K03740 dltD; D-alanine transfer protein
D ATR_0029 two-component system response regulator, putative CusR K18344 vanRB; two-component system, OmpR family, response regulator VanR
D ATR_1700 putative CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D ATR_1697 putative (3S)-malyl-CoA thioesterase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D ATR_0874 DNA-binding response regulator, NarL/FixJ family K11618 liaR; two-component system, NarL family, response regulator LiaR
D ATR_0204 nitrogen regulatory protein P-II, GlnB/GlnK K04751 glnB; nitrogen regulatory protein P-II 1
D ATR_1450 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ATR_1925 hyaC; [Ni-Fe] hydrogenase, cytochrome b subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D ATR_0979 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D ATR_0747 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1146 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1679 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_0219 4HB sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1098 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1955 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1143 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1311 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_0661 PAS sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1963 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1140 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1402 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D ATR_0980 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D ATR_1662 cheY2; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_0981 cheY1; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_1044 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_0977 cheB; MCP protein-glutamate methylesterase (signal receiver domain) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D ATR_0689 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D ATR_1444 TRAP transporter, substrate binding protein, DctP family K11688 dctP; C4-dicarboxylate-binding protein DctP
D ATR_1443 TRAP transporter, small permease subunit K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D ATR_1442 TRAP transporter, large permease subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D ATR_1732 petA; ubiquinol cytochrome c oxidoreductase PetABC, [2Fe-2S] subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D ATR_1733 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D ATR_1734 petC; ubiquinol cytochrome c oxidoreductase PetABC, membrane-bound cytochrome c subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D ATR_1034 cccA2; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D ATR_0552 cccA1; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D ATR_0322 ccoN; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D ATR_0323 ccoO; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D ATR_0324 ccoQ; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D ATR_0325 ccoP; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D ATR_1283 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1291 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1387 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D ATR_1732 petA; ubiquinol cytochrome c oxidoreductase PetABC, [2Fe-2S] subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:atp02024]
D ATR_0079 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D ATR_1368 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D ATR_1831 trpG; anthranilate phosphoribosyltransferase / anthranilate synthase component II, TrpG subunit K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D ATR_0179 aroG; 2-dehydro-3-deoxyphosphoheptonate aldolase (DAHP synthetase, class II) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D ATR_0820 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D ATR_1752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D ATR_1953 RND family efflux system, outer membrane channel protein, TolC family K18139 oprM; outer membrane protein, multidrug efflux system
D ATR_0096 extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ATR_0169 dipeptide/oligopeptide/nickel ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ATR_0850 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ATR_1575 putative dipeptide/oligopeptide/nickel ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ATR_0626 ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D ATR_1378 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ATR_1564 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D ATR_1903 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D ATR_0774 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D ATR_1595 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D ATR_0961 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ATR_0855 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ATR_1669 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:atp02030]
D ATR_0747 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1146 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1679 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_0219 4HB sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1098 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1955 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1143 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1311 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_0661 PAS sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1963 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1140 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_0980 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D ATR_1402 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D ATR_1662 cheY2; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_0981 cheY1; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_1044 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_1045 cheC; response regulator phosphatase K03410 cheC; chemotaxis protein CheC
D ATR_0977 cheB; MCP protein-glutamate methylesterase (signal receiver domain) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D ATR_0689 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D ATR_0978 cheD; chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D ATR_0979 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D ATR_1657 fliG; flagellar motor switch C-ring protein FliG K02410 fliG; flagellar motor switch protein FliG
D ATR_0202 fliM; flagellar motor switch C-ring protein FliM K02416 fliM; flagellar motor switch protein FliM
D ATR_1648 fliY; flagellar motor switch C-ring protein FliY K02417 fliN; flagellar motor switch protein FliN
D ATR_1655 fliN; flagellar motor switch C-ring protein FliN K02417 fliN; flagellar motor switch protein FliN
D ATR_1589 motA; flagellar motor stator protein K02556 motA; chemotaxis protein MotA
D ATR_0164 OmpA domain-containing protein K02557 motB; chemotaxis protein MotB
D ATR_1590 motB; flagellar motor stator protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:atp02040]
D ATR_1641 fliE; flagellar proximal rod protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D ATR_1658 fliF; flagellar inner membrane MS-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D ATR_1657 fliG; flagellar motor switch C-ring protein FliG K02410 fliG; flagellar motor switch protein FliG
D ATR_1656 fliH; flagellar export apparatus, cytoplasmic ATPase complex, FliH component K02411 fliH; flagellar assembly protein FliH
D ATR_1635 fliI; flagellar export apparatus, cytoplasmic ATPase complex, FliI component K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D ATR_0196 fliL; flagellar motor-associated protein FliL K02415 fliL; flagellar protein FliL
D ATR_0202 fliM; flagellar motor switch C-ring protein FliM K02416 fliM; flagellar motor switch protein FliM
D ATR_1648 fliY; flagellar motor switch C-ring protein FliY K02417 fliN; flagellar motor switch protein FliN
D ATR_1655 fliN; flagellar motor switch C-ring protein FliN K02417 fliN; flagellar motor switch protein FliN
D ATR_1293 fliP; flagellar export apparatus, transmembrane gate complex, FliP component K02419 fliP; flagellar biosynthesis protein FliP
D ATR_0199 fliQ; flagellar export apparatus, transmembrane gate complex, FliQ component K02420 fliQ; flagellar biosynthesis protein FliQ
D ATR_1638 fliR; flagellar export apparatus, transmembrane gate complex, FliR component K02421 fliR; flagellar biosynthesis protein FliR
D ATR_1633 flhA; flagellar export apparatus, transmembrane gate complex, FlhA component K02400 flhA; flagellar biosynthesis protein FlhA
D ATR_1637 flhB; flagellar export apparatus, transmembrane gate complex, FlhB component K02401 flhB; flagellar biosynthesis protein FlhB
D ATR_1659 flgB; flagellar proximal rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D ATR_1640 flgC; flagellar proximal rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D ATR_1654 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D ATR_1652 flgE2; flagellar hook protein, epsilonproteobacterial variant K02390 flgE; flagellar hook protein FlgE
D ATR_1653 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D ATR_1660 flgG; flagellar distal rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF
D ATR_1663 flgF; flagellar distal rod protein FlgF K02392 flgG; flagellar basal-body rod protein FlgG
D ATR_0194 flgH; flagellar outer membrane L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D ATR_0201 flgI; flagellar peptidoglycan-localized P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D ATR_1647 putative flagellar rod assembly protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D ATR_0193 flgK; proximal flagellar hook-filament junction protein K02396 flgK; flagellar hook-associated protein 1
D ATR_1634 flgL; distal flagellar hook-filament junction protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D ATR_1807 flaA; flagellin K02406 fliC; flagellin
D ATR_1808 flaB; flagellin K02406 fliC; flagellin
D ATR_0192 fliD; flagellar filament cap protein K02407 fliD; flagellar hook-associated protein 2
D ATR_0191 fliS; flagellar chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D ATR_1589 motA; flagellar motor stator protein K02556 motA; chemotaxis protein MotA
D ATR_0164 OmpA domain-containing protein K02557 motB; chemotaxis protein MotB
D ATR_1590 motB; flagellar motor stator protein K02557 motB; chemotaxis protein MotB
D ATR_0827 rpoD; RNA polymerase sigma70 factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D ATR_1520 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D ATR_0083 metH; cobalamin-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:atp01501]
D ATR_1276 glycosyl hydrolase, family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D ATR_1282 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1951 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1290 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1281 RND family efflux system, inner membrane transporter, AcrB family K18138 acrB; multidrug efflux pump
D ATR_1952 RND family efflux system, inner membrane transporter, AcrB family K18138 acrB; multidrug efflux pump
D ATR_1953 RND family efflux system, outer membrane channel protein, TolC family K18139 oprM; outer membrane protein, multidrug efflux system
D ATR_1283 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1291 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1387 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1576 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D ATR_1294 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D ATR_0613 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:atp01502]
D ATR_0029 two-component system response regulator, putative CusR K18344 vanRB; two-component system, OmpR family, response regulator VanR
D ATR_0749 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D ATR_1141 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D ATR_0751 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D ATR_1573 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D ATR_0611 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:atp01503]
D ATR_0525 phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D ATR_0478 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ATR_0304 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D ATR_1282 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1951 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1290 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1281 RND family efflux system, inner membrane transporter, AcrB family K18138 acrB; multidrug efflux pump
D ATR_1952 RND family efflux system, inner membrane transporter, AcrB family K18138 acrB; multidrug efflux pump
D ATR_1283 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1291 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1387 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1888 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D ATR_1178 dltA; D-alanine--[D-alanyl carrier protein] ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D ATR_1179 dltB; peptidoglycan:teichoic acid D-alanyltransferase K03739 dltB; membrane protein involved in D-alanine export
D ATR_1181 dltD; D-alanyl carrier protein:peptidoglycan D-alanyltransferase K03740 dltD; D-alanine transfer protein
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:atp01000]
C 01001 Protein kinases [BR:atp01001]
D ATR_0306 cprS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_1722 cosS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_0131 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_1101 dccS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_0028 two-component system sensor histidine kinase, putative CusS K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_1413 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_1224 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_1251 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_0451 Cache sensor-containing signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D ATR_0980 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:atp01009]
D ATR_0441 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D ATR_0177 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:atp01002]
D ATR_0137 lspA; prolipoprotein signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D ATR_1800 peptidase, A24 family K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D ATR_1924 hyaD; [Ni-Fe] hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D ATR_0907 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D ATR_0267 outer membrane lipoprotein, NlpC/P60 family K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D ATR_0315 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D ATR_1535 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D ATR_0044 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D ATR_0105 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D ATR_0162 putative lipoprotein-anchoring transpeptidase, ErfK/SrfK family K19234 ynhG; L,D-transpeptidase YnhG
D ATR_1011 zinc-dependent peptidase, M3 family K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D ATR_1543 leucyl aminopeptidase, peptidase M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D ATR_0964 pepD; peptidase D K01270 pepD; dipeptidase D [EC:3.4.13.-]
D ATR_0775 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D ATR_1508 pepQ; Xaa-Pro dipeptidase, M24 metallopeptidase family K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D ATR_1527 ftsH2; integral membrane ATP-dependent zinc metallopeptidase (extracellular domain) K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D ATR_0954 ftsH1; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D ATR_1096 RseP-like zinc metalloprotease, M50 family K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D ATR_0304 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D ATR_0081 D-alanyl-D-alanine carboxypeptidase, peptidase S11 family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ATR_0579 clpP; serine protease ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D ATR_0669 lon; DNA-binding, ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D ATR_1551 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D ATR_0291 ctpA; carboxyl-terminal protease family protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D ATR_1505 sppA; signal peptide peptidase protease IV K04773 sppA; protease IV [EC:3.4.21.-]
D ATR_1333 hslV; heat shock protein HslVU, ATP-dependent protease subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D ATR_1678 collagenase-like peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:atp01003]
D ATR_1576 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:atp01005]
D ATR_1888 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D ATR_1890 lpxB; lipid A disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D ATR_1759 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D ATR_0991 lpxD; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D ATR_0686 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D ATR_1050 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D ATR_0505 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D ATR_1671 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D ATR_0525 phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D ATR_0485 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D ATR_1269 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D ATR_1326 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D ATR_0038 kpsF; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D ATR_0504 waaC; heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D ATR_0524 waaF; heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D ATR_0514 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D ATR_0528 gmhA; sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D ATR_0531 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D ATR_0529 waaE; D,D-heptose 1-phosphate adenosyltransferase / D,D-heptose 7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D ATR_0530 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:atp01011]
D ATR_0487 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D ATR_1867 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D ATR_1780 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D ATR_1572 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D ATR_1476 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D ATR_0749 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D ATR_1141 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D ATR_0336 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D ATR_1573 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D ATR_0611 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D ATR_1445 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ATR_1089 murJ; lipid II flippase K03980 murJ; putative peptidoglycan lipid II flippase
D ATR_1576 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D ATR_1294 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D ATR_0613 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D ATR_0081 D-alanyl-D-alanine carboxypeptidase, peptidase S11 family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ATR_0162 putative lipoprotein-anchoring transpeptidase, ErfK/SrfK family K19234 ynhG; L,D-transpeptidase YnhG
D ATR_0267 outer membrane lipoprotein, NlpC/P60 family K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D ATR_0883 slt; soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D ATR_1792 membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D ATR_1329 membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D ATR_1031 YceG-like protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D ATR_1328 rlpA; septal ring lytic transglycosylase K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D ATR_0478 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:atp01004]
D ATR_0416 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D ATR_0346 fabH; beta-ketoacyl-[acp] synthase III (KASIII) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D ATR_1196 3-oxoacyl-[acp] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D ATR_1203 beta-ketoacyl-[acp] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D ATR_1742 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D ATR_1218 beta-ketoacyl-[acp] synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D ATR_1210 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ATR_1740 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ATR_1889 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D ATR_0276 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D ATR_1698 acyl-CoA synthetase (AMP-forming) / AMP-acid ligase II (CitE domain) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D ATR_0345 plsX; acyl phosphate synthase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D ATR_1764 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D ATR_0286 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:atp01008]
D ATR_1136 MBL fold metallohydrolase K05555 actIV; cyclase [EC:4.-.-.-]
C 01006 Prenyltransferases [BR:atp01006]
D ATR_1398 ispA; geranyl diphosphate synthase / farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D ATR_1601 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D ATR_1801 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D ATR_0067 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D ATR_0069 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D ATR_1838 prenyltransferase, UbiA family K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45]
C 01007 Amino acid related enzymes [BR:atp01007]
D ATR_0885 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ATR_0031 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ATR_0476 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ATR_1613 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D ATR_1786 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D ATR_0282 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ATR_0878 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D ATR_1480 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D ATR_0659 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D ATR_1587 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ATR_1365 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D ATR_0779 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ATR_1339 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ATR_0122 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ATR_1674 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D ATR_0825 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D ATR_1721 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D ATR_1599 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ATR_0242 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D ATR_0311 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D ATR_1745 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D ATR_1746 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D ATR_0912 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D ATR_0062 aspartate aminotransferase, class I and II aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D ATR_0273 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ATR_0183 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D ATR_1139 putative C-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ATR_0136 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D ATR_0379 bioA; adenosylmethionine--8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D ATR_1305 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D ATR_0085 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ATR_1359 dTDP-4-amino-4,6-dideoxygalactose transaminase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D ATR_1815 aminotransferase, DegT/DnrJ/EryC1/StrS family K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:atp00194]
D ATR_0408 atpC; ATP synthase, F1 complex, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D ATR_0407 atpD; ATP synthase, F1 complex, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D ATR_0406 atpG; ATP synthase, F1 complex, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D ATR_0405 atpA; ATP synthase, F1 complex, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D ATR_0404 atpH; ATP synthase, F1 complex, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D ATR_0402 atpF'; ATP synthase, F0 complex, b' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D ATR_0403 atpF; ATP synthase, F0 complex, b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D ATR_0621 atpE; ATP synthase, F0 complex, c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D ATR_1727 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:atp03000]
D ATR_0705 type IIP restriction/modification system, cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ATR_1622 transcriptional regulator, AraC family (GyrI domain) K13652 K13652; AraC family transcriptional regulator
D ATR_0221 transcriptional regulator, AraC family (GyrI domain) K13652 K13652; AraC family transcriptional regulator
D ATR_0785 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D ATR_0317 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D ATR_1048 hspR; heat shock transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D ATR_0848 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D ATR_1087 perR; peroxide stress transcriptional regulator PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D ATR_1706 transcriptional regulator, IscR/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D ATR_1946 iscR; transcriptional regulator, IscR/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D ATR_0209 arsR; transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D ATR_1314 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D ATR_0399 birA; biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D ATR_0018 modE; transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D ATR_0401 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ATR_1796 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D ATR_0093 thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D ATR_0295 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:atp03021]
D ATR_0836 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D ATR_1558 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D ATR_1557 rpoC; DNA-directed RNA polymerase, beta' subunit K13797 rpoBC; DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6]
D ATR_0474 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D ATR_0827 rpoD; RNA polymerase sigma70 factor K03086 rpoD; RNA polymerase primary sigma factor
D ATR_1787 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
D ATR_1452 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D ATR_1563 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D ATR_0295 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D ATR_0687 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D ATR_0339 rho; transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:atp03019]
D ATR_0388 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D ATR_0037 mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily) K12574 rnj; ribonuclease J [EC:3.1.-.-]
D ATR_0852 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D ATR_1773 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D ATR_0047 DEAD-box ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D ATR_1520 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ATR_0982 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D ATR_0339 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D ATR_1794 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D ATR_1396 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ATR_0385 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ATR_0581 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ATR_0582 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ATR_1014 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
C 03041 Spliceosome
C 03011 Ribosome [BR:atp03011]
D ATR_1749 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D ATR_1475 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D ATR_0761 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D ATR_0835 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D ATR_0772 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D ATR_1770 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D ATR_1683 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D ATR_0769 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D ATR_0148 rpsI2; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D ATR_0091 rpsI1; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D ATR_0754 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D ATR_0834 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D ATR_1684 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D ATR_0833 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D ATR_0768 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D ATR_1707 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D ATR_1668 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D ATR_0764 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D ATR_1768 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D ATR_0759 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D ATR_0139 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D ATR_0099 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D ATR_1561 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D ATR_0758 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D ATR_0755 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D ATR_0756 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D ATR_0767 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D ATR_0770 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D ATR_1334 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D ATR_1560 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D ATR_1562 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D ATR_1559 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D ATR_0149 rplM2; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D ATR_0090 rplM1; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D ATR_0765 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D ATR_0773 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D ATR_0762 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D ATR_0837 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D ATR_0771 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D ATR_1625 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D ATR_0245 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D ATR_0392 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D ATR_0760 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D ATR_0757 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D ATR_0766 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D ATR_0393 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D ATR_0533 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D ATR_0763 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D ATR_0066 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D ATR_0344 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D ATR_1566 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D ATR_1381 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D ATR_0244 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D ATR_0832 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D ATR_0482 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D ATR_0547 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1686 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1824 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1895 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1459 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_0543 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1463 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1690 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1828 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1899 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1687 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_0546 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_1825 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_1896 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_1460 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:atp03009]
D ATR_0388 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D ATR_1823 era; GTP-binding protein K03595 era; GTPase
D ATR_0394 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D ATR_0295 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D ATR_1787 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
D ATR_1452 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D ATR_1563 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D ATR_0939 RsuA-like pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D ATR_0036 rsmA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D ATR_1735 rsmE; 16S rRNA m3U1498 methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D ATR_0821 rsmG; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D ATR_1038 rsmH; 16S rRNA m4C1402 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D ATR_0065 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D ATR_0495 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D ATR_0064 rRNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D ATR_1531 SPOUT methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D ATR_0920 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D ATR_0032 rlmN; 23S rRNA m2A2503 methyltransferase / tRNA m2A37 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D ATR_0039 rluB; 23S rRNA pseudouridine 2605 synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D ATR_1301 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D ATR_1670 rluA; 23S rRNA and tRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D ATR_0060 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D ATR_0262 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D ATR_1666 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D ATR_0166 radical SAM methylthiotransferase, MiaB/RimO family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D ATR_1147 YcaO domain-containing protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D ATR_1528 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D ATR_0175 Holliday junction resolvase-like protein (UPF0081 domain) K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D ATR_0444 DEAD-box ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D ATR_0047 DEAD-box ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D ATR_0988 engA; GTP-binding protein K03977 engA; GTPase
D ATR_0475 spoT; ppGpp synthetase / guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D ATR_1754 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D ATR_1753 DUF150 domain-containing protein K09748 rimP; ribosome maturation factor RimP
D ATR_0281 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D ATR_1086 ybeY; rRNA maturation RNase K07042 ybeY; probable rRNA maturation factor
D ATR_0989 raiA; translation inhibitor protein RaiA K05808 hpf; ribosome hibernation promoting factor
D ATR_1353 ychF; GTP-binding protein, putative GTP-dependent translation factor K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:atp03016]
D ATR_1597 cca; multifunctional tRNA nucleotidyl transferase / 2'3'-cyclic phosphodiesterase / 2'nucleotidase / phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D ATR_0885 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ATR_0031 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ATR_1599 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ATR_1480 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D ATR_1587 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ATR_0878 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D ATR_0282 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ATR_1365 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D ATR_0779 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ATR_0311 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D ATR_0242 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D ATR_1721 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D ATR_1786 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D ATR_0659 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D ATR_1339 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ATR_0122 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ATR_1745 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D ATR_1746 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D ATR_0476 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ATR_1613 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D ATR_1744 histidine triad nucleotide-binding protein, Hint/PKCI branch K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D ATR_1299 trmI; tRNA m7G46 methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D ATR_1798 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D ATR_0319 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D ATR_0294 tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D ATR_0745 truD; tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D ATR_1110 NifS/IscS family cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ATR_0067 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D ATR_1376 mnmE; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, GTPase component K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D ATR_1883 mnmG; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, MnmG component K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D ATR_1121 selD; selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D ATR_1380 rnpA; ribonuclease P, protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D ATR_0963 rnpB; ribonuclease P, RNA component K01978 rnpB; M1 RNA
D ATR_1674 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D ATR_0825 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D ATR_0430 ybaK; cysteinyl-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D ATR_1529 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D ATR_1789 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D ATR_0493 cmoA; carboxy-S-adenosyl-L-methionine synthase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D ATR_0968 cmoB; tRNA (cmo5U34)-carboxymethyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D ATR_1806 trmA; tRNA m5U54 methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D ATR_1626 trmD; tRNA m1G37 methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D ATR_1231 rRNA methylase, SpoU family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D ATR_1076 yfiC; tRNA m6A37 methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D ATR_1510 mnmA; tRNA U34 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D ATR_1000 ttcA; tRNA cytosine32 2-sulfurtransferase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D ATR_1043 FAD-dependent oxidoreductase, possible FAD-dependent cmnm(5)s(2)U34 oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D ATR_1057 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D ATR_1737 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D ATR_1738 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D ATR_1739 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D ATR_0004 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D ATR_1891 DUF208 domain-containing protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D ATR_1783 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D ATR_0606 thiI; tRNA uridine 4-sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D ATR_0165 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D ATR_1758 tsaB; N6-L-threonylcarbamoyladenine synthase, TsaB subunit K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D ATR_0233 tsaD; N6-L-threonylcarbamoyladenine synthase, TsaD subunit K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D ATR_1271 tsaE; N6-L-threonylcarbamoyladenine synthase, TsaE subunit K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D ATR_0688 tcdA; tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D ATR_1773 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D ATR_0982 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:atp03012]
D ATR_0232 eIF1/SUI1 family translation initiation factor K03113 EIF1; translation initiation factor 1
D ATR_1755 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D ATR_0243 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D ATR_0801 ABC transporter, ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D ATR_1474 tsf; translation elongation factor EF-Ts K02357 tsf; elongation factor Ts
D ATR_1567 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D ATR_1682 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D ATR_0891 selB; selenocysteine-specific elongation factor K03833 selB; selenocysteine-specific elongation factor
D ATR_0140 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D ATR_1904 frr; ribosome releasing factor K02838 frr; ribosome recycling factor
D ATR_1012 hemK; protein-(glutamine-N5) methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D ATR_0481 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D ATR_0776 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D ATR_1751 efp; translation elongation factor EF-P K02356 efp; elongation factor P
D ATR_1767 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:atp03110]
D ATR_1692 clpA; ATP-dependent protease specificity component and chaperone K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D ATR_1382 clpB; ClpB chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D ATR_1887 clpX; ATP-dependent protease specificity component and chaperone K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D ATR_1332 hslU; heat shock protein HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D ATR_0441 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D ATR_1794 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D ATR_1396 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ATR_0975 dnaJ; DnaK system heat shock co-chaperone K03686 dnaJ; molecular chaperone DnaJ
D ATR_1047 cbpA; co-chaperone-curved DNA binding protein A K05516 cbpA; curved DNA-binding protein
D ATR_1055 djlA; DnaJ-like membrane chaperone protein K05801 djlA; DnaJ like chaperone protein
D ATR_1795 grpE; DnaK system nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D ATR_1397 groES; 10 kD chaperonin (cpn10) K04078 groES; chaperonin GroES
D ATR_0304 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D ATR_1527 ftsH2; integral membrane ATP-dependent zinc metallopeptidase (extracellular domain) K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D ATR_0954 ftsH1; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D ATR_1727 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D ATR_1415 putative periplasmic protein refolding chaperone, Spy/CpxP family (LTXXQ domains) K06006 cpxP; periplasmic protein CpxP/Spy
D ATR_0129 hypothetical protein K06006 cpxP; periplasmic protein CpxP/Spy
D ATR_1915 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D ATR_1919 hypB; hydrogenase nickel insertion protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D ATR_0614 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D ATR_0809 putative periplasmic folding chaperone K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D ATR_0415 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D ATR_1724 peb4; major antigenic peptide / PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D ATR_0640 peptidyl-prolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D ATR_0312 trxA; thioredoxin K03671 TXN; thioredoxin
D ATR_0263 thioredoxin K03671 TXN; thioredoxin
D ATR_0857 thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D ATR_0334 protein disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D ATR_0264 dsbD; thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:atp04131]
D ATR_0342 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D ATR_0279 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ATR_0115 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ATR_0186 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ATR_0441 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:atp03051]
D ATR_0441 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:atp03032]
D ATR_1317 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D ATR_0705 type IIP restriction/modification system, cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ATR_1040 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D ATR_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D ATR_1361 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D ATR_0720 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D ATR_0390 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D ATR_0726 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101]
D ATR_1769 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D ATR_0104 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ATR_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ATR_1771 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ATR_1017 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ATR_0897 dnaQ1; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ATR_1496 dnaQ2; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ATR_0335 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ATR_1383 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D ATR_0864 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D ATR_0537 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D ATR_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D ATR_1866 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D ATR_0717 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:atp03036]
D ATR_0705 type IIP restriction/modification system, cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ATR_0388 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D ATR_1040 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D ATR_1047 cbpA; co-chaperone-curved DNA binding protein A K05516 cbpA; curved DNA-binding protein
D ATR_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D ATR_1938 DNA-binding ferritin-like protein K04047 dps; starvation-inducible DNA-binding protein
D ATR_0810 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D ATR_1298 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D ATR_0613 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D ATR_0990 ftsK; DNA segregation ATPase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D ATR_0573 FtsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D ATR_0612 ftsW; cell division protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D ATR_1297 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D ATR_0811 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D ATR_0478 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ATR_1282 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1951 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1290 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1886 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D ATR_1885 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D ATR_1302 rodA; rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D ATR_0400 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D ATR_0401 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ATR_1883 mnmG; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, MnmG component K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D ATR_0821 rsmG; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D ATR_0976 xerH; integrase / recombinase K04763 xerD; integrase/recombinase XerD
D ATR_0146 mrp; ATP/GTP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D ATR_0715 Fic domain-containing protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D ATR_1393 Fic domain-containing protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D ATR_1323 engB; ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:atp03400]
D ATR_1174 ogt; O6-alkylguanine-DNA-alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ATR_0958 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D ATR_1932 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D ATR_0743 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D ATR_1845 putative Rad52/22 family double-strand break repair protein K10873 RAD52; DNA repair and recombination protein RAD52
D ATR_1168 Nudix domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ATR_1621 Nudix domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ATR_0785 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D ATR_0777 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D ATR_0607 xth; exodeoxyribonuclease III (exonuclease III) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D ATR_1894 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D ATR_0108 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D ATR_0864 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D ATR_0899 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D ATR_0685 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D ATR_1142 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D ATR_0318 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ATR_1122 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ATR_1558 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D ATR_1557 rpoC; DNA-directed RNA polymerase, beta' subunit K13797 rpoBC; DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6]
D ATR_0836 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D ATR_0474 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D ATR_1580 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D ATR_1523 mutS; DNA mismatch repair ATPase K03555 mutS; DNA mismatch repair protein MutS
D ATR_1029 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2
D ATR_1403 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D ATR_0815 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D ATR_1056 DEDDh 3'-5' exonuclease domain family protein K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D ATR_0104 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ATR_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ATR_1771 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ATR_1017 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ATR_0897 dnaQ1; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ATR_1496 dnaQ2; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ATR_0335 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ATR_1769 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D ATR_1729 addA; AddAB recombination complex, helicase AddA K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D ATR_0808 helicase, RecD/TraA family (non-RecBCD) K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D ATR_1864 recA; recombinase K03553 recA; recombination protein RecA
D ATR_0748 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D ATR_0841 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D ATR_1975 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D ATR_1149 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D ATR_1192 sbcC; DNA repair exonuclease SbcCD, ATPase subunit K03546 sbcC; DNA repair protein SbcC/Rad50
D ATR_1193 sbcD; DNA repair exonuclease SbcCD, nuclease subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D ATR_1084 radA; DNA repair and recombination protein K04485 radA; DNA repair protein RadA/Sms
D ATR_1065 recR; recombination protein K06187 recR; recombination protein RecR
D ATR_1680 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D ATR_0330 addB; AddAB recombination complex, helicase AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D ATR_0537 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D ATR_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D ATR_1866 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D ATR_1040 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D ATR_0806 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D ATR_0058 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ATR_0057 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D ATR_1761 nrnA; nanoRNase / pAp phosphatase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:atp03029]
D ATR_1733 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D ATR_1755 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D ATR_0243 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D ATR_1474 tsf; translation elongation factor EF-Ts K02357 tsf; elongation factor Ts
D ATR_1567 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D ATR_1682 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D ATR_1805 HELICc and SUV3_C domain-containing protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6]
D ATR_1823 era; GTP-binding protein K03595 era; GTPase
D ATR_0476 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ATR_1587 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ATR_0779 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ATR_0282 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ATR_0838 gatA; Glu-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D ATR_0052 gatB; Glu-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D ATR_1784 gatC; Glu-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D ATR_1769 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D ATR_0888 beta-barrel assembly machinery complex, BamA/YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D ATR_1794 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D ATR_1795 grpE; DnaK system nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D ATR_1396 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ATR_1397 groES; 10 kD chaperonin (cpn10) K04078 groES; chaperonin GroES
D ATR_0975 dnaJ; DnaK system heat shock co-chaperone K03686 dnaJ; molecular chaperone DnaJ
D ATR_1110 NifS/IscS family cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ATR_0146 mrp; ATP/GTP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D ATR_1378 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ATR_0441 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:atp02000]
D ATR_1090 msbA; lipid A export ATP-binding/permease protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D ATR_0872 type I secretion system ATPase/permease, LssB family K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D ATR_1066 ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D ATR_1966 sbp; sulfate ABC transporter, sulfate binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D ATR_1962 cysT; sulfate ABC transporter CysATW, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D ATR_1961 cysW; sulfate ABC transporter CysATW, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D ATR_1960 cysA; sulfate ABC transporter CysATW, ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D ATR_0017 modA; molybdenum ABC transporter ModABC, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D ATR_0015 modB; molybdenum ABC transporter ModABC, permease protein K02018 modB; molybdate transport system permease protein
D ATR_0014 modC; molybdenum ABC transporter ModABC, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D ATR_1860 iron(III)/spermidine/putrescine ABC transporter, periplasmic substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D ATR_1861 iron(III)/spermidine/putrescine ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D ATR_1862 iron(III)/spermidine/putrescine ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D ATR_1310 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D ATR_0622 nitrate/sulfonate/bicarbonate ABC transporter, periplasmic substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D ATR_0625 nitrate/sulfonate/bicarbonate ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D ATR_0624 nitrate/sulfonate/bicarbonate ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D ATR_0076 mlaD; lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D ATR_0078 mlaE; lipid asymmetry ABC transporter MlaABCDEF, permease component MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D ATR_0077 mlaF; lipid asymmetry ABC transporter MlaABCDEF, ATPase component MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D ATR_0075 putative lipid asymmetry ABC transporter MlaABCDEF component MlaB K18480 linN; cholesterol transport system auxiliary component
D ATR_1164 mlaC; lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D ATR_0158 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D ATR_0559 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D ATR_0156 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D ATR_0558 phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D ATR_0155 pstA; phosphate ABC transporter, permease protein (DUF3333 domain) K02038 pstA; phosphate transport system permease protein
D ATR_0557 phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D ATR_0154 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D ATR_0556 phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D ATR_0096 extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ATR_0169 dipeptide/oligopeptide/nickel ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ATR_0850 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ATR_1575 putative dipeptide/oligopeptide/nickel ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ATR_0626 ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D ATR_0012 iron siderophore ABC transporter, periplasmic substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D ATR_0011 iron siderophore ABC transporter, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D ATR_1026 ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D ATR_0010 iron siderophore ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D ATR_0945 iron siderophore ABC transporter, periplasmic substrate-binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D ATR_0947 iron siderophore ABC transporter, permease protein K25027 btuC; cobalamin transport system permease protein
D ATR_0946 iron siderophore ABC transporter, ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D ATR_0462 metal ion ABC transporter, periplasmic metal-binding protein K09815 znuA; zinc transport system substrate-binding protein
D ATR_0653 metal ion ABC transporter, membrane protein K09816 znuB; zinc transport system permease protein
D ATR_0652 metal ion ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D ATR_1911 cbiQ; cobalt/nickel ECF transporter CbiMNQO, T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D ATR_1913 cbiM; cobalt/nickel ECF transporter CbiMNQO, S component CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D ATR_1910 cbiO; cobalt/nickel ECF transporter CbiMNQO, A component, ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D ATR_1914 DUF4198 domain-containing protein K10094 cbiK; nickel transport protein
D ATR_1912 cbiN; cobalt/nickel ECF transporter CbiMNQO, S component CbiN K16915 cbiL; nickel transport protein
D ATR_1436 ABC transporter, permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D ATR_1799 lptF; lipooligosaccharide transport system, ABC transporter permease component LptF K07091 lptF; lipopolysaccharide export system permease protein
D ATR_0480 lptG; lipooligosaccharide transport system, ABC transporter permease component LptG K11720 lptG; lipopolysaccharide export system permease protein
D ATR_1270 lptB; lipooligosaccharide transport system, ABC transporter ATP-binding component LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D ATR_1435 ABC transporter, ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]
D ATR_1297 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D ATR_1298 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D ATR_1216 ABC transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D ATR_0936 nosY; copper ABC transporter NosDFY, putative permease protein NosY K01992 ABC-2.P; ABC-2 type transport system permease protein
D ATR_1215 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ATR_0934 nosF; copper ABC transporter NosDFY, putative ATP-binding protein NosF K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ATR_0960 lolC; lipoprotein releasing system, transmembrane protein, LolC/E family K02004 ABC.CD.P; putative ABC transport system permease protein
D ATR_1384 ABC transporter, permease protein, MacB family K02004 ABC.CD.P; putative ABC transport system permease protein
D ATR_0296 ABC transporter, permease protein, FtsX/LolE family K02004 ABC.CD.P; putative ABC transport system permease protein
D ATR_0297 ABC transporter, ATP-binding protein, FtsE/LolD family K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ATR_1385 ABC transporter, ATP-binding protein, FtsE/LolD family K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ATR_1473 ABC transporter, ATP-binding protein, FtsE/LolD family K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ATR_0679 sufC; [Fe-S] cluster assembly scaffold SufBCD, ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D ATR_1907 putative major facilitator superfamily transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D ATR_1875 drug resistance transporter, Bcr/CflA family K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D ATR_1939 drug resistance transporter, Bcr/CflA family K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D ATR_1632 proton antiporter protein, major facilitator superfamily K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D ATR_0270 major facilitator superfamily transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D ATR_0534 putative potassium channel protein (TrkA domain) K10716 kch; voltage-gated potassium channel
D ATR_0205 ammonium transporter, marine subtype K03320 amt; ammonium transporter, Amt family
D ATR_1900 BAX inhibitor (BI)-1 like protein (UPF0005 domain) K19416 yccA; modulator of FtsH protease
D ATR_1598 mscS; small conductance mechanosensitive channel protein K03442 mscS; small conductance mechanosensitive channel
D ATR_0422 miniconductance mechanosensitive channel protein K16053 ybdG; miniconductance mechanosensitive channel
D ATR_1589 motA; flagellar motor stator protein K02556 motA; chemotaxis protein MotA
D ATR_0164 OmpA domain-containing protein K02557 motB; chemotaxis protein MotB
D ATR_1590 motB; flagellar motor stator protein K02557 motB; chemotaxis protein MotB
D ATR_1617 exbB2; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D ATR_1388 exbB1; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D ATR_0409 tolQ; Tol-Pal system subunit TolQ K03561 exbB; biopolymer transport protein ExbB
D ATR_1616 exbD2; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D ATR_0410 tolR; Tol-Pal system subunit TolR K03559 exbD; biopolymer transport protein ExbD
D ATR_1389 exbD1; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D ATR_1818 corAI; magnesium and cobalt transport protein K03284 corA; magnesium transporter
D ATR_1909 zinc transporter (EcCorA_ZntB-like family) K16074 zntB; zinc transporter
D ATR_0285 crcB; putative fluoride ion transporter K06199 crcB; fluoride exporter
D ATR_0789 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ATR_1028 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ATR_0056 OmpA domain-containing protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D ATR_1513 cadF; outer membrane fibronectin-binding protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D ATR_0944 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D ATR_1685 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D ATR_1357 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D ATR_0013 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D ATR_0690 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D ATR_0026 outer membrane efflux protein, TolC family, putative CusC K15725 czcC; outer membrane protein, heavy metal efflux system
D ATR_1283 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1291 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1387 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_0871 type I secretion system outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system
D ATR_1953 RND family efflux system, outer membrane channel protein, TolC family K18139 oprM; outer membrane protein, multidrug efflux system
D ATR_0888 beta-barrel assembly machinery complex, BamA/YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D ATR_0668 beta-barrel assembly machinery complex, BamD/YfiO lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D ATR_1578 putative autotransporter secretion outer membrane protein TamA K07278 tamA; translocation and assembly module TamA
D ATR_1577 autotransporter translocation and assembly factor TamB K09800 tamB; translocation and assembly module TamB
D ATR_1324 lptA; lipooligosaccharide transport system, periplasmic component LptA K09774 lptA; lipopolysaccharide export system protein LptA
D ATR_0984 lptD; lipooligosaccharide transport system, OM translocon component LptD K04744 lptD; LPS-assembly protein
D ATR_0447 divalent metal cation transporter (ZT_dimer domain) K13283 fieF; ferrous-iron efflux pump FieF
D ATR_0024 CusA family copper/silver efflux pump K07787 cusA; copper/silver efflux system protein
D ATR_1281 RND family efflux system, inner membrane transporter, AcrB family K18138 acrB; multidrug efflux pump
D ATR_1952 RND family efflux system, inner membrane transporter, AcrB family K18138 acrB; multidrug efflux pump
D ATR_1252 QacE family quaternary ammonium compound efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE
D ATR_0211 UPF0060 domain-containing membrane protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D ATR_1061 tellurite-resistance/dicarboxylate transporter (TDT) family protein K03304 tehA; tellurite resistance protein
D ATR_0483 inorganic phosphate transporter, PitA family K16322 pit; low-affinity inorganic phosphate transporter
D ATR_1494 cation:acetate symporter K14393 actP; cation/acetate symporter
D ATR_1498 actP1; acetate permease K14393 actP; cation/acetate symporter
D ATR_1500 actP2; acetate permease K14393 actP; cation/acetate symporter
D ATR_0174 gltS; sodium:glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family
D ATR_0464 nhaA; sodium:proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D ATR_0921 glutathione-regulated potassium-efflux system protein, KefB/KefC family K03455 KEA1_2_3; K+:H+ antiporter
D ATR_0265 sodium:sulfate symporter family protein K11106 ttdT; L-tartrate/succinate antiporter
D ATR_1873 sulfate permease K03321 TC.SULP; sulfate permease, SulP family
D ATR_1444 TRAP transporter, substrate binding protein, DctP family K11688 dctP; C4-dicarboxylate-binding protein DctP
D ATR_1443 TRAP transporter, small permease subunit K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D ATR_1442 TRAP transporter, large permease subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D ATR_1228 sodium:phosphate symporter K03324 yjbB; phosphate:Na+ symporter
D ATR_1467 sodium:phosphate symporter K03324 yjbB; phosphate:Na+ symporter
D ATR_0208 arsB; arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein
D ATR_1089 murJ; lipid II flippase K03980 murJ; putative peptidoglycan lipid II flippase
D ATR_1517 putative permease K13936 mdcF; malonate transporter and related proteins
D ATR_0673 putative permease K24180 mleP; malate permease and related proteins
D ATR_0398 putative permease K24180 mleP; malate permease and related proteins
D ATR_0858 putative permease K24180 mleP; malate permease and related proteins
D ATR_0045 permease K24180 mleP; malate permease and related proteins
D ATR_1929 MarC family membrane protein K05595 marC; multiple antibiotic resistance protein
D ATR_0612 ftsW; cell division protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D ATR_1614 manganese efflux pump MntP K23242 mntP; manganese efflux pump family protein
D ATR_1390 tonB1; energy transduction protein TonB K03832 tonB; periplasmic protein TonB
D ATR_0411 tolA; Tol-Pal system subunit TolA K03832 tonB; periplasmic protein TonB
D ATR_1303 TonB domain-containing protein K03832 tonB; periplasmic protein TonB
D ATR_0413 pal; Tol-Pal system peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D ATR_0412 tolB; Tol-Pal system translocation protein TolB K03641 tolB; TolB protein
D ATR_1936 molybdopterin-containing oxidoreductase II, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D ATR_0025 putative copper/silver efflux system, membrane fusion protein CusB K07798 cusB; membrane fusion protein, copper/silver efflux system
D ATR_0873 type I secretion system membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system
D ATR_1282 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1951 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1290 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_0847 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D ATR_0846 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
C 02044 Secretion system [BR:atp02044]
D ATR_1283 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1291 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1387 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_0872 type I secretion system ATPase/permease, LssB family K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D ATR_0873 type I secretion system membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system
D ATR_0871 type I secretion system outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system
D ATR_0498 type II secretion/transformation system, D protein K02453 gspD; general secretion pathway protein D
D ATR_1820 type II secretion/transformation system, E protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D ATR_1819 type II secretion/transformation system, F protein K02455 gspF; general secretion pathway protein F
D ATR_1360 type II secretion/transformation system, G protein K02456 gspG; general secretion pathway protein G
D ATR_1800 peptidase, A24 family K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D ATR_0884 YggT family membrane protein K02221 yggT; YggT family protein
D ATR_0548 competence protein, ComEA family K02237 comEA; competence protein ComEA
D ATR_0050 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D ATR_1466 ctsW; transformation system, predicted amidophosphoribosyltransferase CtsW K02242 comFC; competence protein ComFC
D ATR_1633 flhA; flagellar export apparatus, transmembrane gate complex, FlhA component K02400 flhA; flagellar biosynthesis protein FlhA
D ATR_1637 flhB; flagellar export apparatus, transmembrane gate complex, FlhB component K02401 flhB; flagellar biosynthesis protein FlhB
D ATR_1320 FlhB C-terminus-related protein K04061 flhB2; flagellar biosynthesis protein
D ATR_1658 fliF; flagellar inner membrane MS-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D ATR_1656 fliH; flagellar export apparatus, cytoplasmic ATPase complex, FliH component K02411 fliH; flagellar assembly protein FliH
D ATR_1635 fliI; flagellar export apparatus, cytoplasmic ATPase complex, FliI component K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D ATR_1648 fliY; flagellar motor switch C-ring protein FliY K02417 fliN; flagellar motor switch protein FliN
D ATR_1655 fliN; flagellar motor switch C-ring protein FliN K02417 fliN; flagellar motor switch protein FliN
D ATR_1293 fliP; flagellar export apparatus, transmembrane gate complex, FliP component K02419 fliP; flagellar biosynthesis protein FliP
D ATR_0199 fliQ; flagellar export apparatus, transmembrane gate complex, FliQ component K02420 fliQ; flagellar biosynthesis protein FliQ
D ATR_1638 fliR; flagellar export apparatus, transmembrane gate complex, FliR component K02421 fliR; flagellar biosynthesis protein FliR
D ATR_0724 P-type type IV conjugative transfer system, lytic transglycosylase VirB1 K03194 virB1; type IV secretion system protein VirB1
D ATR_0741 putative membrane protein K03197 virB2; type IV secretion system protein VirB2
D ATR_0740 P-type type IV conjugative transfer system protein, fused VirB3/VirB4 (TrbDE) K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D ATR_0737 P-type type IV conjugative transfer system protein TrbJ/VirB5 K03200 virB5; type IV secretion system protein VirB5
D ATR_0735 P-type type IV conjugative transfer system protein TrbL/VirB6 K03201 virB6; type IV secretion system protein VirB6
D ATR_0733 P-type type IV conjugative transfer system protein TrbF/VirB8 K03203 virB8; type IV secretion system protein VirB8
D ATR_0732 P-type type IV conjugative transfer system translocation pore protein TrbG/VirB9 K03204 virB9; type IV secretion system protein VirB9
D ATR_0731 P-type type IV conjugative transfer system translocation pore protein TrbI/VirB10 K03195 virB10; type IV secretion system protein VirB10
D ATR_0730 P-type type IV conjugative transfer system ATPase TrbB/VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D ATR_0729 P-type type IV conjugative transfer system coupling protein TraG/VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D ATR_0857 thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D ATR_0334 protein disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D ATR_0739 cag pathogenicity island family protein K12097 cag12; cag pathogenicity island protein 12
D ATR_0961 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ATR_1594 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D ATR_1564 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D ATR_1593 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D ATR_1903 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D ATR_0774 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D ATR_1669 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D ATR_0855 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ATR_1595 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D ATR_1378 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ATR_0283 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D ATR_0284 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D ATR_1059 tatB; twin arginine translocation system, TatB protein K03117 tatB; sec-independent protein translocase protein TatB
D ATR_1058 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:atp02042]
D ATR_0789 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ATR_1028 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:atp02022]
D ATR_0151 phoB; two-component system response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D ATR_0029 two-component system response regulator, putative CusR K18344 vanRB; two-component system, OmpR family, response regulator VanR
D ATR_0306 cprS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_1722 cosS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_0131 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_1101 dccS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_0028 two-component system sensor histidine kinase, putative CusS K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_1413 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_1224 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_1251 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ATR_0305 cprR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D ATR_1723 cosR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D ATR_0130 two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D ATR_1414 two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D ATR_1102 dccR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D ATR_1250 two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D ATR_0874 DNA-binding response regulator, NarL/FixJ family K11618 liaR; two-component system, NarL family, response regulator LiaR
D ATR_0451 Cache sensor-containing signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D ATR_0980 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D ATR_1662 cheY2; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_0981 cheY1; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_1044 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_0977 cheB; MCP protein-glutamate methylesterase (signal receiver domain) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D ATR_0689 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
C 02035 Bacterial motility proteins [BR:atp02035]
D ATR_0980 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D ATR_1402 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D ATR_1045 cheC; response regulator phosphatase K03410 cheC; chemotaxis protein CheC
D ATR_0978 cheD; chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D ATR_0979 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D ATR_0977 cheB; MCP protein-glutamate methylesterase (signal receiver domain) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D ATR_1662 cheY2; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_0981 cheY1; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_1044 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ATR_0689 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D ATR_0747 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1146 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1679 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_0219 4HB sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1098 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1955 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1143 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1311 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_0661 PAS sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1963 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1140 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D ATR_1656 fliH; flagellar export apparatus, cytoplasmic ATPase complex, FliH component K02411 fliH; flagellar assembly protein FliH
D ATR_1635 fliI; flagellar export apparatus, cytoplasmic ATPase complex, FliI component K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D ATR_1293 fliP; flagellar export apparatus, transmembrane gate complex, FliP component K02419 fliP; flagellar biosynthesis protein FliP
D ATR_0199 fliQ; flagellar export apparatus, transmembrane gate complex, FliQ component K02420 fliQ; flagellar biosynthesis protein FliQ
D ATR_1638 fliR; flagellar export apparatus, transmembrane gate complex, FliR component K02421 fliR; flagellar biosynthesis protein FliR
D ATR_1633 flhA; flagellar export apparatus, transmembrane gate complex, FlhA component K02400 flhA; flagellar biosynthesis protein FlhA
D ATR_1637 flhB; flagellar export apparatus, transmembrane gate complex, FlhB component K02401 flhB; flagellar biosynthesis protein FlhB
D ATR_1657 fliG; flagellar motor switch C-ring protein FliG K02410 fliG; flagellar motor switch protein FliG
D ATR_0202 fliM; flagellar motor switch C-ring protein FliM K02416 fliM; flagellar motor switch protein FliM
D ATR_1648 fliY; flagellar motor switch C-ring protein FliY K02417 fliN; flagellar motor switch protein FliN
D ATR_1655 fliN; flagellar motor switch C-ring protein FliN K02417 fliN; flagellar motor switch protein FliN
D ATR_1658 fliF; flagellar inner membrane MS-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D ATR_0201 flgI; flagellar peptidoglycan-localized P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D ATR_0194 flgH; flagellar outer membrane L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D ATR_0196 fliL; flagellar motor-associated protein FliL K02415 fliL; flagellar protein FliL
D ATR_1641 fliE; flagellar proximal rod protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D ATR_1659 flgB; flagellar proximal rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D ATR_1640 flgC; flagellar proximal rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D ATR_1654 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D ATR_1660 flgG; flagellar distal rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF
D ATR_1663 flgF; flagellar distal rod protein FlgF K02392 flgG; flagellar basal-body rod protein FlgG
D ATR_1647 putative flagellar rod assembly protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D ATR_1652 flgE2; flagellar hook protein, epsilonproteobacterial variant K02390 flgE; flagellar hook protein FlgE
D ATR_1653 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D ATR_0193 flgK; proximal flagellar hook-filament junction protein K02396 flgK; flagellar hook-associated protein 1
D ATR_1634 flgL; distal flagellar hook-filament junction protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D ATR_1807 flaA; flagellin K02406 fliC; flagellin
D ATR_1808 flaB; flagellin K02406 fliC; flagellin
D ATR_0192 fliD; flagellar filament cap protein K02407 fliD; flagellar hook-associated protein 2
D ATR_0191 fliS; flagellar chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D ATR_1589 motA; flagellar motor stator protein K02556 motA; chemotaxis protein MotA
D ATR_0164 OmpA domain-containing protein K02557 motB; chemotaxis protein MotB
D ATR_1590 motB; flagellar motor stator protein K02557 motB; chemotaxis protein MotB
D ATR_1772 fliW; putative flagellin level sensor protein FliW K13626 fliW; flagellar assembly factor FliW
D ATR_1644 flhF; polar flagellar biogenesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D ATR_1643 flhG; polar flagellar biogenesis regulatory protein FlhG K04562 flhG; flagellar biosynthesis protein FlhG
D ATR_1800 peptidase, A24 family K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:atp04812]
D ATR_0647 AmmeMemoRadiSam system protein B K06990 MEMO1; MEMO1 family protein
D ATR_1886 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D ATR_0811 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D ATR_0810 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D ATR_0400 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D ATR_0401 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:atp04147]
D ATR_0441 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D ATR_1520 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ATR_0279 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ATR_0115 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ATR_0278 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D ATR_0186 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ATR_0340 ahpC; alkyl hydroperoxide reductase protein, peroxidase component K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D ATR_1396 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ATR_1794 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D ATR_1516 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ATR_0839 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D ATR_1567 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D ATR_1744 histidine triad nucleotide-binding protein, Hint/PKCI branch K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D ATR_0781 adkII; adenylate kinase (lid-domain-containing Adk) K00939 adk; adenylate kinase [EC:2.7.4.3]
D ATR_0782 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D ATR_1546 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D ATR_0684 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D ATR_0849 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D ATR_0880 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D ATR_1450 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ATR_0819 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D ATR_1750 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ATR_0377 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D ATR_0794 lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ATR_0277 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:atp02048]
D ATR_1395 hsdR; type I restriction/modification system, restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D ATR_1391 hsdS; type I restriction/modification system, specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D ATR_1392 hsdM; type I restriction/modification system, methylation subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D ATR_1880 type IIB restriction/modification system, restriction/methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D ATR_0593 type II DNA methyltransferase K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D ATR_0705 type IIP restriction/modification system, cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ATR_0697 hypothetical protein K07448 mrr; restriction system protein
D ATR_0811 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D ATR_1886 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D ATR_0885 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ATR_0031 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ATR_1110 NifS/IscS family cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:atp01504]
D ATR_1632 proton antiporter protein, major facilitator superfamily K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D ATR_0029 two-component system response regulator, putative CusR K18344 vanRB; two-component system, OmpR family, response regulator VanR
D ATR_1178 dltA; D-alanine--[D-alanyl carrier protein] ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D ATR_1179 dltB; peptidoglycan:teichoic acid D-alanyltransferase K03739 dltB; membrane protein involved in D-alanine export
D ATR_1181 dltD; D-alanyl carrier protein:peptidoglycan D-alanyltransferase K03740 dltD; D-alanine transfer protein
D ATR_1282 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1951 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1290 RND family efflux system, membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D ATR_1281 RND family efflux system, inner membrane transporter, AcrB family K18138 acrB; multidrug efflux pump
D ATR_1952 RND family efflux system, inner membrane transporter, AcrB family K18138 acrB; multidrug efflux pump
D ATR_1953 RND family efflux system, outer membrane channel protein, TolC family K18139 oprM; outer membrane protein, multidrug efflux system
D ATR_1283 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1291 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
D ATR_1387 RND family efflux system, outer membrane channel protein, TolC family K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:atp03100]
D ATR_0545 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ATR_1897 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ATR_1461 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ATR_1688 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ATR_1826 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ATR_0070 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ATR_0226 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ATR_0541 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D ATR_0542 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D ATR_1486 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D ATR_1490 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D ATR_0300 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D ATR_1542 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D ATR_0454 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D ATR_0818 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ATR_1484 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ATR_1488 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ATR_0224 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ATR_1538 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ATR_1568 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ATR_0227 tRNA-His K14226 tRNA-His; tRNA His
D ATR_1827 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ATR_0544 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ATR_1462 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ATR_1898 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ATR_1689 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ATR_0225 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ATR_1041 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ATR_1184 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ATR_0302 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ATR_1483 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D ATR_1487 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D ATR_1540 tRNA-Met K14230 tRNA-Met; tRNA Met
D ATR_1455 tRNA-Met K14230 tRNA-Met; tRNA Met
D ATR_1539 tRNA-Met K14230 tRNA-Met; tRNA Met
D ATR_1571 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D ATR_0452 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D ATR_0228 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D ATR_1454 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ATR_0301 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ATR_1541 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ATR_1570 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ATR_1565 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D ATR_1569 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D ATR_0453 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D ATR_1489 tRNA-Val K14237 tRNA-Val; tRNA Val
D ATR_1485 tRNA-Val K14237 tRNA-Val; tRNA Val
D ATR_0893 selC; tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D ATR_0543 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1463 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1690 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1828 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1899 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ATR_1687 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_0546 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_1825 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_1896 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_1460 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ATR_0547 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1686 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1824 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1895 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_1459 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ATR_0006 srpB; bacterial signal recognition particle RNA (4.5S RNA) K01983 ffs; SRP RNA
D ATR_0963 rnpB; ribonuclease P, RNA component K01978 rnpB; M1 RNA
D ATR_0576 ssrA; 10Sa RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D ATR_0584 saccharopine dehydrogenase-like protein K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D ATR_0859 flavodoxin-like fold domain-containing protein, putative NAD(P)H (quinone) dehydrogenase/reductase K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D ATR_1248 cytochrome c K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2]
D ATR_0381 msrA; S-isomer-specific methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D ATR_0380 msrB; R-isomer-specific methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D ATR_0271 ccpA; periplasmic diheme cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D ATR_0615 diheme cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D ATR_0492 bcp; thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D ATR_0655 tpx; lipid hydroperoxide peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D ATR_1926 hyaB; [Ni-Fe] hydrogenase, large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1]
D ATR_1927 hyaA; [Ni-Fe] hydrogenase, small subunit K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D ATR_0117 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D ATR_0250 arsenate reductase (ArsC) family protein K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D ATR_0213 arsC; arsenate reductase, LMWPc family K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D ATR_1019 nrdG; anaerobic ribonucleoside triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D ATR_1596 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D ATR_0938 aat; leucyl, phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D ATR_0844 ate; arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D ATR_1081 modD; quinolinate phosphoribosyltransferase-like protein K03813 modD; molybdenum transport protein [EC:2.4.2.-]
D ATR_1265 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D ATR_1085 thioesterase K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D ATR_1008 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D ATR_0948 sixA2; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D ATR_1374 sixA1; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D ATR_1330 tatD; ssDNA/RNA exonuclease, 3' - 5' specific K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D ATR_0578 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D ATR_1620 reactive intermediate/imine deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D ATR_0234 serine hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D ATR_0231 carbohydrate kinase, YjeF-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D ATR_0826 lig; DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D ATR_1313 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D ATR_0682 CBS domain-containing protein K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D ATR_1111 fdhD; formate dehydrogenase accessory protein K02379 fdhD; FdhD protein
D ATR_0681 iscU; [Fe-S] cluster assembly scaffold protein K13819 K13819; NifU-like protein
D ATR_1718 napD; periplasmic nitrate reductase assembly protein K02570 napD; periplasmic nitrate reductase NapD
D ATR_1716 napF; ferredoxin-type protein K02572 napF; ferredoxin-type protein NapF
D ATR_1713 napG; menaquinol dehydrogenase NapGH, periplasmic component NapG K02573 napG; ferredoxin-type protein NapG
D ATR_0930 nosG; menaquinol dehydrogenase NosGH, periplasmic component NosG K02573 napG; ferredoxin-type protein NapG
D ATR_1714 napH; menaquinol dehydrogenase NapGH, membrane component NapH K02574 napH; ferredoxin-type protein NapH
D ATR_0933 nosH; menaquinol dehydrogenase NosGH, membrane component NosH K02574 napH; ferredoxin-type protein NapH
D ATR_0637 cytochrome d1 heme domain protein, putative heme d1 dehydrogenase NirF K19345 nirF; protein NirF
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D ATR_1097 type III pyridoxal 5-phosphate (PLP)-dependent enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D ATR_0638 heme d1 biosynthesis radical SAM protein NirJ K24868 nirJ; heme d1 biosynthesis protein
D ATR_0881 mobB; molybdenum cofactor guanylyltransferase protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D ATR_0450 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D ATR_0426 putative membrane protein, DoxX family K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D ATR_1554 cold shock protein K03704 cspA; cold shock protein
D ATR_0370 transcriptional accessory protein Tex K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D ATR_0167 META domain-containing protein K03668 hslJ; heat shock protein HslJ
D ATR_1693 clpS; ClpAP chaperone-protease complex specificity factor K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D ATR_0580 tig; trigger factor (peptidyl-prolyl cis/trans isomerase, chaperone) K03545 tig; trigger factor
D ATR_0321 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D ATR_1918 hypC; hydrogenase assembly chaperone HypC K04653 hypC; hydrogenase expression/formation protein HypC
D ATR_1917 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D ATR_1916 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
C 99976 Replication and repair
D ATR_1005 rmuC; DNA recombination protein K09760 rmuC; DNA recombination protein RmuC
D ATR_0784 endonuclease III K07457 K07457; endonuclease III related protein
D ATR_0184 UPF0102 domain-containing protein K07460 yraN; putative endonuclease
D ATR_1776 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein
D ATR_0040 rarA; recombination factor protein RarA K07478 ycaJ; putative ATPase
D ATR_1335 resolvase K14060 pinR; putative DNA-invertase from lambdoid prophage Rac
D ATR_1853 hypothetical protein K06919 K06919; putative DNA primase/helicase
D ATR_1261 IS3 family transposase orfA K07483 K07483; transposase
D ATR_1188 IS3 family transposase orfA K07483 K07483; transposase
D ATR_0866 IS3 family transposase orfA K07483 K07483; transposase
D ATR_1611 IS3 family transposase orfA K07483 K07483; transposase
D ATR_0072 IS3 family transposase orfA K07483 K07483; transposase
D ATR_1850 IS3 family transposase orfA K07483 K07483; transposase
D ATR_0649 IS3 family transposase orfA K07483 K07483; transposase
D ATR_1522 IS3 family transposase orfA K07483 K07483; transposase
D ATR_1348 IS3 family transposase orfA K07483 K07483; transposase
D ATR_0555 IS3 family transposase orfA K07483 K07483; transposase
D ATR_0588 IS3 family transposase orfA K07483 K07483; transposase
D ATR_1458 IS3 family transposase orfA K07483 K07483; transposase
D ATR_1920 hypothetical protein K07488 K07488; transposase
D ATR_1612 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_0865 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_0073 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_1851 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_1189 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_1262 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_1349 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_0554 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_0589 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_0601 integrase (rve domain) K07497 K07497; putative transposase
D ATR_1457 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_0650 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_1521 IS3 family transposase orfB K07497 K07497; putative transposase
D ATR_0071 site-specific tyrosine recombinase, phage integrase family (INT_ICEBs1_C_like domain) K14059 int; integrase
D ATR_0691 site-specific tyrosine recombinase, phage integrase family (INT_ICEBs1_C_like domain) K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D ATR_1399 YbaB/EbfC DNA-binding family protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D ATR_0046 inorganic phosphate transporter, PitA family K03306 TC.PIT; inorganic phosphate transporter, PiT family
D ATR_1893 sodium-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D ATR_1230 branched-chain amino acid transport protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
C 99978 Cell growth
D ATR_1377 Jag domain-containing protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D ATR_1354 cstA; carbon starvation protein A K06200 cstA; carbon starvation protein
D ATR_1968 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D ATR_0042 putative ribonuclease, YlaK/PhoH family K07175 phoH2; PhoH-like ATPase
D ATR_1495 cAMP-binding nucleotidyltransferase (CBS domain) K07182 K07182; CBS domain-containing protein
D ATR_1501 cAMP-binding nucleotidyltransferase (CBS domain) K07182 K07182; CBS domain-containing protein
D ATR_1243 putative YajQ-like nucleotide-binding protein (DUF520 domain) K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D ATR_0962 lolA; periplasmic outer membrane-specific lipoprotein chaperone K03634 lolA; outer membrane lipoprotein carrier protein
D ATR_1163 mlaA; lipid asymmetry ABC transporter MlaABCDEF, lipoprotein MlaA K04754 mlaA; phospholipid-binding lipoprotein MlaA
D ATR_1386 RND family efflux system, membrane fusion protein K02005 ABC.CD.TX; HlyD family secretion protein
C 99994 Others
D ATR_0153 phoU; phosphate transport system regulatory protein K02039 phoU; phosphate transport system protein
D ATR_0230 putative CutA divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D ATR_1959 hemerythrin K07216 hr; hemerythrin
D ATR_0929 nosD; copper ABC transporter NosDFY, periplasmic copper-binding protein NosD K07218 nosD; nitrous oxidase accessory protein
D ATR_0619 imelysin-like iron-regulated protein A-like protein, IrpA family K07231 K07231; putative iron-regulated protein
D ATR_0623 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO
D ATR_0657 putative heme-copper protein NnrS K07234 K07234; uncharacterized protein involved in response to NO
D ATR_0172 DrsE domain-containing protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
D ATR_0935 NosL domain-containing protein K19342 nosL; copper chaperone NosL
D ATR_0937 NosL domain-containing protein K19342 nosL; copper chaperone NosL
D ATR_0941 hypothetical protein K19342 nosL; copper chaperone NosL
D ATR_1344 NosL domain-containing protein K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D ATR_1364 CvpA family membrane protein K03558 cvpA; membrane protein required for colicin V production
D ATR_0434 globin K06886 glbN; hemoglobin
D ATR_0680 sufB; [Fe-S] cluster assembly scaffold SufBCD, SufB protein K09014 sufB; Fe-S cluster assembly protein SufB
D ATR_0678 sufD; [Fe-S] cluster assembly scaffold SufBCD, SufD protein K09015 sufD; Fe-S cluster assembly protein SufD
D ATR_0489 BrkB/YihY/UPF0761 family membrane protein, possible virulence factor K07058 K07058; membrane protein
D ATR_0983 putative phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D ATR_0676 sufE; sulfur acceptor/SufS accessory protein K02426 sufE; cysteine desulfuration protein SufE
D ATR_1367 SPOR domain-containing protein K03749 dedD; DedD protein
D ATR_0435 PqiA family membrane protein K03808 pqiA; paraquat-inducible protein A
D ATR_0436 pqiA; paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D ATR_1630 DUF350 domain-containing membrane protein K08989 K08989; putative membrane protein
D ATR_0420 YchJ family protein (SEC-C domain) K09858 K09858; SEC-C motif domain protein
D ATR_1948 Cupin domain-containing protein K11312 K11312; cupin 2 domain-containing protein
D ATR_0159 PhnA domain-containing protein K06193 phnA; protein PhnA
C 99997 Function unknown
D ATR_0439 ankyrin domain-containing protein K06867 K06867; uncharacterized protein
D ATR_0207 ankyrin domain-containing protein K06867 K06867; uncharacterized protein
D ATR_1300 fibronectin type III domain-containing protein K06882 K06882; uncharacterized protein
D ATR_1268 DUF234 domain-containing protein K06921 K06921; uncharacterized protein
D ATR_1704 CoA-binding domain-containing protein K06929 K06929; uncharacterized protein
D ATR_1075 putative [Fe-S] cluster-containing protein K06940 K06940; uncharacterized protein
D ATR_1537 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein
D ATR_0822 hypothetical protein K06950 K06950; uncharacterized protein
D ATR_1667 putative RNA-binding protein (KH domain) K06960 K06960; uncharacterized protein
D ATR_1165 RND superfamily transporter K07003 K07003; uncharacterized protein
D ATR_1213 putative membrane protein K07003 K07003; uncharacterized protein
D ATR_0803 nitroimidazol reductase (NimA) family protein K07005 K07005; uncharacterized protein
D ATR_1778 pyridoxamine 5'-phosphate oxidase K07006 K07006; uncharacterized protein
D ATR_1004 putative neutral zinc metallopeptidase K07054 K07054; uncharacterized protein
D ATR_0957 NAD-dependent epimerase/dehydratase (DUF1731 domain) K07071 K07071; uncharacterized protein
D ATR_0212 arsP; arsenic resistance permease K07089 K07089; uncharacterized protein
D ATR_1342 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D ATR_0214 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D ATR_0609 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D ATR_1705 oligoribonuclease NrnB K07097 K07097; uncharacterized protein
D ATR_1958 membrane-associated metallophosphoesterase (YkuE domain) K07098 K07098; uncharacterized protein
D ATR_1969 fdhT; formate dehydrogenase biogenesis protein FdhT K07112 K07112; uncharacterized protein
D ATR_0812 putative sulfur transporter K07112 K07112; uncharacterized protein
D ATR_0098 putative ammonia monooxygenase K07120 K07120; uncharacterized protein
D ATR_1872 tetratricopeptide repeat protein K07126 K07126; uncharacterized protein
D ATR_0656 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D ATR_1371 ATP-binding protein (AAA domain) K07133 K07133; uncharacterized protein
D ATR_0316 radical SAM protein, TIGR01212 family K07139 K07139; uncharacterized protein
D ATR_1672 zinc ribbon domain-containing protein (DUF164 domain) K07164 K07164; uncharacterized protein
D ATR_1379 membrane protein insertion efficiency factor, YidD family K08998 K08998; uncharacterized protein
D ATR_1134 intracellular sulfur oxidation protein, DsrE/DsrF family K09004 K09004; uncharacterized protein
D ATR_1067 GatB/YqeY family protein K09117 K09117; uncharacterized protein
D ATR_0646 AmmeMemoRadiSam system protein A K09141 K09141; uncharacterized protein
D ATR_1703 PAS sensor-containing signal transduction protein K09155 K09155; uncharacterized protein
D ATR_0101 DUF493 domain-containing protein K09158 K09158; uncharacterized protein
D ATR_1555 YciI domain-containing protein K09780 K09780; uncharacterized protein
D ATR_0942 sulfite exporter TauE/SafE family protein (DsbD_2 domain) K09792 K09792; uncharacterized protein
D ATR_0536 DUF465 domain-containing protein K09794 K09794; uncharacterized protein
D ATR_0309 SIMPL domain-containing protein K09797 K09797; uncharacterized protein
D ATR_1775 divergent polysaccharide deacetylase K09798 K09798; uncharacterized protein
D ATR_1049 DUF475 domain-containing membrane protein K09799 K09799; uncharacterized protein
D ATR_0124 DUF507 domain-containing protein K09804 K09804; uncharacterized protein
D ATR_0654 putative RNA-binding protein (S1 domain) K00243 K00243; uncharacterized protein
D ATR_1928 peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D ATR_1138 putative membrane protein K09943 K09943; uncharacterized protein
D ATR_1782 hypothetical protein K09944 K09944; uncharacterized protein
D ATR_1921 putative transcriptional regulator (zinc finger domain) K09981 K09981; uncharacterized protein
D ATR_1756 putative RNA-binding protein (DUF448 domain) K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 9, 2024