+E Transcription factors KO
#
Transcription Factors - Aureimonas sp. AU20
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D M673_19445 hypothetical protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D M673_01275 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D M673_03255 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D M673_09365 hypothetical protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D M673_18735 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D M673_15715 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D M673_20475 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D M673_07010 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D M673_12165 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D M673_19065 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D M673_07625 hypothetical protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D M673_03470 hypothetical protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D M673_04140 hypothetical protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D M673_00795 hypothetical protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
C DeoR family
D M673_20850 hypothetical protein K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D M673_22015 hypothetical protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D M673_22110 hypothetical protein K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D M673_17350 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D M673_17635 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D M673_17805 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D M673_03765 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D M673_18105 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D M673_20595 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D M673_21940 hypothetical protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D M673_22695 hypothetical protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D M673_18455 hypothetical protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D M673_17890 hypothetical protein K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D M673_18760 hypothetical protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D M673_21895 hypothetical protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D M673_09430 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D M673_22660 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D M673_16280 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D M673_16310 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D M673_22365 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D M673_21725 hypothetical protein K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D M673_08885 hypothetical protein K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D M673_17550 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D M673_08830 hypothetical protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D M673_08150 hypothetical protein K09017 rutR; TetR/AcrR family transcriptional regulator
D M673_23390 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D M673_20685 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D M673_04780 hypothetical protein K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D M673_23000 hypothetical protein K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA
C Lrp/AsnC family
D M673_08280 hypothetical protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D M673_04245 hypothetical protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D M673_18250 hypothetical protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D M673_14100 ArsR family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D M673_09985 hypothetical protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D M673_02055 hypothetical protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D M673_02030 hypothetical protein K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
D M673_21810 hypothetical protein K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D M673_20140 hypothetical protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D M673_02715 hypothetical protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D M673_20750 hypothetical protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D M673_02950 hypothetical protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D M673_16995 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D M673_02555 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D M673_04880 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D M673_19340 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D M673_05190 hypothetical protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D M673_02505 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D M673_07450 hypothetical protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D M673_00040 transcriptional regulator K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D M673_20365 hypothetical protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D M673_18805 hypothetical protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D M673_13175 hypothetical protein K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
C ArsR family
D M673_21200 hypothetical protein K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D M673_22605 hypothetical protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D M673_19270 hypothetical protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D M673_20805 hypothetical protein K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon
D M673_11745 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D M673_23010 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D M673_18110 hypothetical protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D M673_22755 hypothetical protein K02019 modE; molybdate transport system regulatory protein
D M673_14785 hypothetical protein K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D M673_08285 hypothetical protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D M673_16605 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D M673_19640 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D M673_02220 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D M673_07230 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D M673_21665 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D M673_17520 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D M673_05620 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D M673_03455 hypothetical protein K03705 hrcA; heat-inducible transcriptional repressor
D M673_00715 hypothetical protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D M673_00720 hypothetical protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D M673_09735 hypothetical protein K07735 algH; putative transcriptional regulator
D M673_10375 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D M673_12830 hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D M673_15350 hypothetical protein K03925 mraZ; transcriptional regulator MraZ
D M673_11975 hypothetical protein K25885 exoR; exopolysaccharide production negative regulator
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
#
Classification taken and modified from TRANSFAC 7.0