+F Repair protein KO #

  DNA Repair and Recombination Proteins - Acinetobacter ursingii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D URS_0196 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E URS_2474 uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E URS_0456 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E URS_1046 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E URS_1984 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D URS_0606 nudix hydrolase family protein PA3470 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D URS_2321 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D URS_1667 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D URS_1735 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D URS_0196 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D URS_1394 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E URS_2474 uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E URS_0456 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E URS_1046 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E URS_1049 DNA-4-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E URS_0457 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E URS_1984 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E URS_0965 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E URS_0941 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E URS_1681 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E URS_0245 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E URS_1244 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E URS_3245 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E URS_1391 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E URS_0187 possible DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E URS_1543 ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E URS_0245 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E URS_1681 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F URS_0710 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F URS_0709 DNA-directed RNA polymerase alpha subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F URS_0565 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F URS_0688 DNA-directed RNA polymerase alpha subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F URS_2653 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E URS_3147 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E URS_2450 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E URS_2300 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E URS_2402 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E URS_1121 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E URS_0766 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E URS_1786 DNA polymerase III alpha subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E URS_2465 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E URS_3294 ribonuclease HI K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7] E URS_2644 DNA polymerase III subunits gamma K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E URS_1681 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E URS_0187 possible DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E URS_1543 ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E URS_1252 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E URS_1439 exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E URS_1438 exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E URS_1441 exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E URS_2884 RecA protein K03553 recA; recombination protein RecA E URS_3175 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E URS_3176 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E URS_2601 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E URS_1453 helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E URS_1752 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E URS_1753 exonuclease SbcC K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E URS_2884 RecA protein K03553 recA; recombination protein RecA E URS_0056 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E URS_1122 DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF E URS_0604 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E URS_0341 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E URS_0941 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E URS_2291 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E URS_2978 recombination protein RecR K06187 recR; recombination protein RecR E URS_1404 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E URS_3175 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E URS_3176 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E URS_2601 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E URS_2191 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E URS_1752 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E URS_1753 exonuclease SbcC K03547 sbcD; DNA repair protein SbcD/Mre11 E URS_0594 ATPase component BioM of energizing module of biotin ECF transporter K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F URS_0045 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F URS_1123 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F URS_1538 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F URS_2665 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F URS_0941 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F URS_2291 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F URS_2978 recombination protein RecR K06187 recR; recombination protein RecR F URS_1681 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F URS_0101 hypothetical protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F URS_2522 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F URS_0254 integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha F URS_2480 integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F URS_1244 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F URS_3245 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F URS_0729 putative DNA binding protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D URS_0795 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D URS_3416 error-prone, lesion bypass DNA polymerase V K03502 umuC; DNA polymerase V D URS_2673 error-prone, lesion bypass DNA polymerase V K03502 umuC; DNA polymerase V D URS_2674 error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D URS_3415 error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D URS_2884 RecA protein K03553 recA; recombination protein RecA D URS_1404 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D URS_1252 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D URS_2885 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D URS_1734 ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] C Modulation of nucleotide pools D URS_0606 nudix hydrolase family protein PA3470 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D URS_2321 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D URS_1667 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D URS_1735 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D URS_0184 ribonucleotide reductase of class Ia, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D URS_0186 ribonucleotide reductase of class Ia, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024