+F Repair protein KO #

  DNA Repair and Recombination Proteins - Aerococcus urinaehominis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AWM75_03450 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E AWM75_07415 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AWM75_05960 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AWM75_02565 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E AWM75_04165 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AWM75_08490 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AWM75_04425 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AWM75_03450 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E AWM75_07415 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AWM75_05960 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AWM75_06265 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E AWM75_02565 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E AWM75_04165 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AWM75_01425 exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E AWM75_00335 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AWM75_05355 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E AWM75_06260 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E AWM75_05195 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A E AWM75_02810 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E AWM75_03795 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E AWM75_05350 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AWM75_06260 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E AWM75_05355 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AWM75_04220 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AWM75_04215 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AWM75_03505 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F AWM75_03955 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F AWM75_02735 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AWM75_03740 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AWM75_06710 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E AWM75_01275 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E AWM75_06715 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E AWM75_08480 hypothetical protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E AWM75_02120 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E AWM75_06740 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AWM75_01930 polC; DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E AWM75_04680 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AWM75_02835 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AWM75_04025 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AWM75_04045 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AWM75_05355 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AWM75_05350 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AWM75_04625 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E AWM75_05270 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AWM75_07190 recombinase RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E AWM75_06695 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E AWM75_06725 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AWM75_06730 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AWM75_02730 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E AWM75_05205 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E AWM75_05200 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E AWM75_06695 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E AWM75_04420 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E AWM75_04645 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF E AWM75_02670 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AWM75_07740 AAA family ATPase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AWM75_00335 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AWM75_00305 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AWM75_04035 recombination protein RecR K06187 recR; recombination protein RecR E AWM75_02100 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E AWM75_07445 Holliday junction resolvase RecU K03700 recU; recombination protein U E AWM75_06725 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AWM75_06730 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E AWM75_02020 hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E AWM75_02025 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E AWM75_08320 type I-E CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E AWM75_05205 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E AWM75_05200 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AWM75_04635 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AWM75_04640 gyrB; DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AWM75_01195 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AWM75_06830 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AWM75_00335 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AWM75_00305 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AWM75_04035 recombination protein RecR K06187 recR; recombination protein RecR F AWM75_05355 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F AWM75_04065 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AWM75_06805 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AWM75_05195 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A F AWM75_02810 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AWM75_02495 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AWM75_02550 excinuclease ABC subunit A K03502 umuC; DNA polymerase V C Other SOS response factors D AWM75_06695 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D AWM75_00345 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D AWM75_02100 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D AWM75_04625 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D AWM75_05270 hypothetical protein K03111 ssb; single-strand DNA-binding protein D AWM75_05955 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AWM75_06850 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D AWM75_08490 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AWM75_04425 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AWM75_03655 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AWM75_03650 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D AWM75_02485 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024