+F Repair protein KO
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DNA Repair and Recombination Proteins - Aerococcus urinaehominis
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AWM75_03450 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E AWM75_07415 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AWM75_05960 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AWM75_02565 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E AWM75_04165 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D AWM75_08490 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AWM75_04425 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AWM75_03450 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E AWM75_07415 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AWM75_05960 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AWM75_06265 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AWM75_02565 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E AWM75_04165 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AWM75_01425 exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E AWM75_00335 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E AWM75_05355 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E AWM75_06260 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AWM75_05195 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A
E AWM75_02810 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E AWM75_03795 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E AWM75_05350 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AWM75_06260 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E AWM75_05355 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F AWM75_04220 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F AWM75_04215 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F AWM75_03505 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F AWM75_03955 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
F AWM75_02735 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F AWM75_03740 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AWM75_06710 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E AWM75_01275 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E AWM75_06715 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E AWM75_08480 hypothetical protein K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E AWM75_02120 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E AWM75_06740 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E AWM75_01930 polC; DNA polymerase III subunit alpha K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E AWM75_04680 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E AWM75_02835 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E AWM75_04025 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E AWM75_04045 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E AWM75_05355 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E AWM75_05350 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AWM75_04625 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E AWM75_05270 hypothetical protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E AWM75_07190 recombinase RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E AWM75_06695 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA
E AWM75_06725 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AWM75_06730 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AWM75_02730 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E AWM75_05205 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E AWM75_05200 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E AWM75_06695 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA
E AWM75_04420 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E AWM75_04645 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
E AWM75_02670 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AWM75_07740 AAA family ATPase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AWM75_00335 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E AWM75_00305 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E AWM75_04035 recombination protein RecR K06187 recR; recombination protein RecR
E AWM75_02100 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E AWM75_07445 Holliday junction resolvase RecU K03700 recU; recombination protein U
E AWM75_06725 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AWM75_06730 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E AWM75_02020 hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E AWM75_02025 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E AWM75_08320 type I-E CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E AWM75_05205 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E AWM75_05200 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F AWM75_04635 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F AWM75_04640 gyrB; DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F AWM75_01195 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F AWM75_06830 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F AWM75_00335 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F AWM75_00305 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F AWM75_04035 recombination protein RecR K06187 recR; recombination protein RecR
F AWM75_05355 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F AWM75_04065 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AWM75_06805 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AWM75_05195 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A
F AWM75_02810 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D AWM75_02495 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D AWM75_02550 excinuclease ABC subunit A K03502 umuC; DNA polymerase V
C Other SOS response factors
D AWM75_06695 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA
D AWM75_00345 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D AWM75_02100 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D AWM75_04625 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AWM75_05270 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D AWM75_05955 hypothetical protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D AWM75_06850 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D AWM75_08490 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AWM75_04425 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AWM75_03655 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AWM75_03650 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D AWM75_02485 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024