+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Trichormus variabilis
%
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ACRISPR-Cas system
B Universal Cas proteins
C Ava_4176 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
C Ava_4177 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
D Ava_4165 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
C Subtype I-A factors
D Ava_3492 CRISPR-associated autoregulator, Cst2 family K19075 cst2; CRISPR-associated protein Cst2
D Ava_4175 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Ava_3493 fruiting body developmental protein S-like protein K19090 cas5t; CRISPR-associated protein Cas5t
D Ava_4174 CRISPR-associated protein, Cas6 family K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
C Subtype I-B factors
D Ava_4175 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-C factors
D Ava_4175 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-D factors
D Ava_4172 CRISPR-associated protein Csc1 K19120 csc1; CRISPR-associated protein Csc1
D Ava_4171 CRISPR-associated protein Csc2 K19121 csc2; CRISPR-associated protein Csc2
D Ava_4170 CRISPR-associated protein Csc3 K19122 csc3; CRISPR-associated protein Csc3
D Ava_4175 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Ava_4174 CRISPR-associated protein, Cas6 family K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
C Subtype I-E factors
C Subtype I-F factors
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
D Ava_4175 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C Ava_1156 Type I site-specific deoxyribonuclease HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C Ava_3273 conserved hypothetical protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C Ava_3502 Type I site-specific deoxyribonuclease HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C Ava_3267 Restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C Ava_3499 Restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C Ava_1158 Restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C Ava_1159 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C Ava_3271 Putative RNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C Ava_3498 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
C DNA methyltransferases
D Ava_2663 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Ava_4407 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Ava_B0330 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ava_C0232 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ava_0101 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Ava_0731 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
B Type IV R-M system
C Ava_3259 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
C Ava_4561 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
C Ava_B0091 restriction endonuclease K07448 mrr; restriction system protein
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
D Ava_4869 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D Ava_4870 transcriptional regulator/antitoxin, MazE K07172 mazE; antitoxin MazE
C ChpB-ChpS
C YhaV-PrlF
C RelE/StbE-RelB/StbD
D Ava_2497 Plasmid stabilization system K06218 relE; mRNA interferase RelE/StbE
D Ava_4655 hypothetical protein K06218 relE; mRNA interferase RelE/StbE
C YafQ-dinJ
D Ava_1311 Plasmid stabilization system K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
C YoeB-YefM
D Ava_2088 Addiction module toxin, Txe/YoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D Ava_2087 Prevent-host-death protein K19159 yefM; antitoxin YefM
C HipA-HipB
C HicA-HicB
D Ava_2178 Protein of unknown function UPF0150 K18843 hicB; antitoxin HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
C CcdB-CcdA
C ParE-ParD
D Ava_1707 Protein of unknown function UPF0156 K07746 parD1_3_4; antitoxin ParD1/3/4
D Ava_B0335 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain K07746 parD1_3_4; antitoxin ParD1/3/4
C Doc-Phd
C HigB-HigA
D Ava_2130 conserved hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D Ava_3242 Plasmid maintenance system killer K07334 higB-1; toxin HigB-1
D Ava_2129 transcription regulator containing HTH K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D Ava_3243 Plasmid maintenance system antidote protein K21498 higA-1; antitoxin HigA-1
C MqsR-MqsA
C VapC-VapB
D Ava_3269 PilT protein-like protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D Ava_2505 PilT protein-like protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
C BC_0920-BC_0921
C Type II TA system related factors
D Ava_1837 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Ava_1461 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Ava_4861 glutamate--tRNA(Gln) ligase / glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C Ava_4245 Aromatic amino acid beta-eliminating lyase/threonine aldolase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C Ava_4856 Aromatic amino acid beta-eliminating lyase/threonine aldolase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C Ava_3914 Aromatic amino acid beta-eliminating lyase/threonine aldolase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C Ava_B0304 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C Ava_0437 Aromatic amino acid beta-eliminating lyase/threonine aldolase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C Ava_2209 Phosphoadenosine phosphosulfate reductase K19170 dndC; DNA sulfur modification protein DndC
C Ava_2201 conserved hypothetical protein K19171 dndD; DNA sulfur modification protein DndD
C Ava_2210 conserved hypothetical protein K19171 dndD; DNA sulfur modification protein DndD
C Ava_2211 conserved hypothetical protein K19172 dndE; DNA sulfur modification protein DndE
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023