+D Messenger RNA Biogenesis KO #

  Prokaryotic Defense System - Trichormus variabilis

% ! ACRISPR-Cas system B Universal Cas proteins C Ava_4176 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 C Ava_4177 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2 B Type I CRISPR-Cas system C Type I signiture cas proteins D Ava_4165 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] C Subtype I-A factors D Ava_3492 CRISPR-associated autoregulator, Cst2 family K19075 cst2; CRISPR-associated protein Cst2 D Ava_4175 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Ava_3493 fruiting body developmental protein S-like protein K19090 cas5t; CRISPR-associated protein Cas5t D Ava_4174 CRISPR-associated protein, Cas6 family K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] C Subtype I-B factors D Ava_4175 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] C Subtype I-C factors D Ava_4175 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] C Subtype I-D factors D Ava_4172 CRISPR-associated protein Csc1 K19120 csc1; CRISPR-associated protein Csc1 D Ava_4171 CRISPR-associated protein Csc2 K19121 csc2; CRISPR-associated protein Csc2 D Ava_4170 CRISPR-associated protein Csc3 K19122 csc3; CRISPR-associated protein Csc3 D Ava_4175 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Ava_4174 CRISPR-associated protein, Cas6 family K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] C Subtype I-E factors C Subtype I-F factors C Subtype I-U factors B Type II CRISPR-Cas system C Type II signiture cas proteins C Subtype II-A factors C Subtype II-B factors D Ava_4175 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] B Type III CRISPR-Cas system C Type III signiture cas proteins C Subtype III-A factors C Subtype III-B factors C Subtype III-U factors # ARestriction and modification system (R-M system) B Type I R-M system C Ava_1156 Type I site-specific deoxyribonuclease HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C Ava_3273 conserved hypothetical protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C Ava_3502 Type I site-specific deoxyribonuclease HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C Ava_3267 Restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C Ava_3499 Restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C Ava_1158 Restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C Ava_1159 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C Ava_3271 Putative RNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C Ava_3498 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] B Type II R-M system C Restriction endonucleases C DNA methyltransferases D Ava_2663 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Ava_4407 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Ava_B0330 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Ava_C0232 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Ava_0101 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Ava_0731 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] B Type III R-M system B Type IV R-M system C Ava_3259 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] C Ava_4561 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] C Ava_B0091 restriction endonuclease K07448 mrr; restriction system protein # AToxin-antitoxin system (TA system) B Type I TA system C Hok-Sok C SymE-SymR C Ldr-Rdl C TisB-IstR C Ibs-Sib C ShoB-OhsC C RalR-RalA B Type II TA system C MazF-MazE D Ava_4869 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D Ava_4870 transcriptional regulator/antitoxin, MazE K07172 mazE; antitoxin MazE C ChpB-ChpS C YhaV-PrlF C RelE/StbE-RelB/StbD D Ava_2497 Plasmid stabilization system K06218 relE; mRNA interferase RelE/StbE D Ava_4655 hypothetical protein K06218 relE; mRNA interferase RelE/StbE C YafQ-dinJ D Ava_1311 Plasmid stabilization system K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] C YoeB-YefM D Ava_2088 Addiction module toxin, Txe/YoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-] D Ava_2087 Prevent-host-death protein K19159 yefM; antitoxin YefM C HipA-HipB C HicA-HicB D Ava_2178 Protein of unknown function UPF0150 K18843 hicB; antitoxin HicB C YafO-YafN C Hha-TomB C PspC-PspB C CcdB-CcdA C ParE-ParD D Ava_1707 Protein of unknown function UPF0156 K07746 parD1_3_4; antitoxin ParD1/3/4 D Ava_B0335 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain K07746 parD1_3_4; antitoxin ParD1/3/4 C Doc-Phd C HigB-HigA D Ava_2130 conserved hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D Ava_3242 Plasmid maintenance system killer K07334 higB-1; toxin HigB-1 D Ava_2129 transcription regulator containing HTH K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Ava_3243 Plasmid maintenance system antidote protein K21498 higA-1; antitoxin HigA-1 C MqsR-MqsA C VapC-VapB D Ava_3269 PilT protein-like protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D Ava_2505 PilT protein-like protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] C PezT-PezA C YobL-YobK C YokI-YokJ C YqcG-YqcF C YxiD-YxxD C FitB-FitA C BC_0920-BC_0921 C Type II TA system related factors D Ava_1837 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Ava_1461 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Ava_4861 glutamate--tRNA(Gln) ligase / glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] B Type III TA system C AbiQ system B Type IV TA system C YeeV-YeeU C CptA-CptB B Type V TA system C GhoT-GhoS # ADNA phosphothiolation system B Sulfur modification proteins C Ava_4245 Aromatic amino acid beta-eliminating lyase/threonine aldolase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C Ava_4856 Aromatic amino acid beta-eliminating lyase/threonine aldolase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C Ava_3914 Aromatic amino acid beta-eliminating lyase/threonine aldolase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C Ava_B0304 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C Ava_0437 Aromatic amino acid beta-eliminating lyase/threonine aldolase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C Ava_2209 Phosphoadenosine phosphosulfate reductase K19170 dndC; DNA sulfur modification protein DndC C Ava_2201 conserved hypothetical protein K19171 dndD; DNA sulfur modification protein DndD C Ava_2210 conserved hypothetical protein K19171 dndD; DNA sulfur modification protein DndD C Ava_2211 conserved hypothetical protein K19172 dndE; DNA sulfur modification protein DndE B DNA phosphorothioation-dependent restriction proteins ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023