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Transcription Machinery - Archangium violaceum
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E JQX13_37685 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E JQX13_47470 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E JQX13_47465 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E JQX13_33785 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E JQX13_48300 sigma-70 family RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
E JQX13_50800 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E JQX13_18885 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_05175 RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_07145 RNA polymerase subunit sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_21505 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_07925 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_10600 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_10850 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_10875 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_13385 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_14805 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_29470 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_32040 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_32130 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_33645 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_34225 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_34890 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_35290 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_39920 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_41595 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_41930 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_42960 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_44320 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_00955 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_50565 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_51325 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_52480 RNA polymerase subunit sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_03765 RNA polymerase subunit sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_04130 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_16425 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_16740 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_30005 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_04220 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_42320 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_45650 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_32245 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E JQX13_26070 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor
E JQX13_43760 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor
E JQX13_45585 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
E JQX13_50505 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor
E JQX13_23485 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
E JQX13_30490 sigma-70 family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E JQX13_20505 DEAD/DEAH box helicase family protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E JQX13_28730 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
E JQX13_34745 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
E JQX13_47495 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E JQX13_28690 stringent starvation protein B K03600 sspB; stringent starvation protein B
E JQX13_18305 anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E JQX13_18300 STAS domain-containing protein K17762 rsbS; rsbT antagonist protein RsbS
E JQX13_18295 STAS domain-containing protein K17763 rsbR; rsbT co-antagonist protein RsbR
E JQX13_06385 PAS domain S-box protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E JQX13_35675 SpoIIE family protein phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E JQX13_00710 PAS domain-containing protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E JQX13_01000 response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E JQX13_06390 alpha/beta hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ
E JQX13_41060 alpha/beta hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ
E JQX13_28115 STAS domain-containing protein K04749 rsbV; anti-sigma B factor antagonist
D Transcription elongation factors
E JQX13_09740 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
E JQX13_27645 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
E JQX13_45820 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
E JQX13_48015 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
E JQX13_37825 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E JQX13_45880 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
E JQX13_03605 GreA/GreB family elongation factor K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E JQX13_28030 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
E JQX13_30805 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
E JQX13_30240 hypothetical protein K19000 rof; Rho-binding antiterminator
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024