+E Transcription factors KO
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Transcription Factors - Aeromonas veronii TH0426
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D AMS64_12575 DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D AMS64_13765 AraC family transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D AMS64_07790 AraC family transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D AMS64_02325 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D AMS64_07280 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D AMS64_08080 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D AMS64_08425 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D AMS64_17430 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D AMS64_10940 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AMS64_18670 AraC family transcriptional regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D AMS64_18175 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AMS64_04135 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AMS64_01005 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D AMS64_19915 transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D AMS64_08095 XRE family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D AMS64_20215 nhaR; transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D AMS64_00150 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D AMS64_12830 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D AMS64_06560 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D AMS64_04430 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D AMS64_22425 transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D AMS64_14310 cysB; CysB family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D AMS64_20635 cbl; transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D AMS64_12840 transcriptional regulator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D AMS64_14350 LysR family transcriptional regulator K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator
D AMS64_08070 LysR family transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D AMS64_12385 transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D AMS64_12410 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D AMS64_01595 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AMS64_15970 repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AMS64_09875 transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D AMS64_16470 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D AMS64_03645 treR; trehalose repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D AMS64_00845 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D AMS64_09375 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D AMS64_01865 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D AMS64_00090 transcriptional regulator K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D AMS64_07640 transcriptional regulator K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
D AMS64_09220 LacI family transcriptional regulator K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D AMS64_21485 GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D AMS64_10970 transcriptional regulator K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
D AMS64_08645 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D AMS64_03345 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D AMS64_16720 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D AMS64_00315 TetR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D AMS64_01025 TetR family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D AMS64_04895 TetR family transcriptional regulator K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D AMS64_05155 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AMS64_03410 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D AMS64_21650 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D AMS64_21940 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D AMS64_04605 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AMS64_11145 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D AMS64_17585 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
C MerR family
D AMS64_00010 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AMS64_19860 zntR; zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D AMS64_18330 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D AMS64_16100 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
C CRP/FNR family
D AMS64_05675 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D AMS64_09455 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D AMS64_11660 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D AMS64_22415 BadM/Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D AMS64_20295 transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D AMS64_16950 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AMS64_20210 transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D AMS64_20880 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D AMS64_07260 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D AMS64_21800 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D AMS64_19640 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D AMS64_02260 ABC transporter substrate-binding protein K11925 sgrR; SgrR family transcriptional regulator
D AMS64_17060 transcriptional regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D AMS64_15725 Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D AMS64_17545 AAA family ATPase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D AMS64_11275 AAA family ATPase K11908 vasH; sigma-54 dependent transcriptional regulator
D AMS64_10210 AAA family ATPase K15836 fhlA; formate hydrogenlyase transcriptional activator
D AMS64_20450 XRE family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D AMS64_02545 XRE family transcriptional regulator K07726 K07726; putative transcriptional regulator
D AMS64_17400 XRE family transcriptional regulator K07726 K07726; putative transcriptional regulator
D AMS64_05900 Cro/Cl family transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D AMS64_20715 Met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D AMS64_05355 pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D AMS64_18235 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D AMS64_00515 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AMS64_19480 transcriptional regulator K05785 rfaH; transcriptional antiterminator RfaH
D AMS64_20335 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D AMS64_22235 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D AMS64_16130 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D AMS64_08400 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D AMS64_03960 transcriptional regulator K02562 mtlR; mannitol operon repressor
D AMS64_08010 transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D AMS64_17770 transcriptional regulator K03765 cadC; transcriptional activator of cad operon
D AMS64_19550 transcriptional regulator K03567 gcvR; glycine cleavage system transcriptional repressor
D AMS64_07970 AAA family ATPase K03974 pspF; psp operon transcriptional activator
D AMS64_07985 phage-shock protein K03973 pspC; phage shock protein C
D AMS64_21015 transcriptional regulator K05880 dhaR; transcriptional activator for dhaKLM operon
D AMS64_15335 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D AMS64_11975 transcriptional regulator K07733 alpA; prophage regulatory protein
D AMS64_17905 hypothetical protein K07735 algH; putative transcriptional regulator
D AMS64_04810 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D AMS64_01680 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D AMS64_08480 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor
D AMS64_18925 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D AMS64_19285 sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl
D AMS64_22015 hypothetical protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D AMS64_03205 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0