+F Repair protein KO
#
DNA Repair and Recombination Proteins - Aeromonas veronii TH0426
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AMS64_18675 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AMS64_20370 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AMS64_18325 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AMS64_06860 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AMS64_04205 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AMS64_12615 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D AMS64_03290 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMS64_04620 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMS64_22590 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMS64_06130 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMS64_08215 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMS64_01035 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AMS64_18675 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AMS64_20370 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AMS64_10940 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AMS64_18325 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D AMS64_10190 photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E AMS64_06860 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AMS64_18670 AraC family transcriptional regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E AMS64_04205 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AMS64_00890 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AMS64_01175 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AMS64_12615 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AMS64_13010 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E AMS64_08510 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E AMS64_06275 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E AMS64_17630 ligA; aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E AMS64_01300 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AMS64_20925 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E AMS64_08620 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E AMS64_12330 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E AMS64_01475 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AMS64_01300 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E AMS64_17630 ligA; aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F AMS64_21740 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F AMS64_21735 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F AMS64_02080 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F AMS64_00260 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F AMS64_10890 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AMS64_03560 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E AMS64_19425 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E AMS64_20250 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E AMS64_10155 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E AMS64_10965 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E AMS64_18850 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E AMS64_17965 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E AMS64_00425 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E AMS64_02345 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E AMS64_06220 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E AMS64_09780 AAA family ATPase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E AMS64_10780 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AMS64_13095 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AMS64_08500 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E AMS64_19955 hypothetical protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
E AMS64_12130 hypothetical protein K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DNA ligase
E AMS64_17630 ligA; aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E AMS64_01475 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AMS64_20965 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E AMS64_12300 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E AMS64_06610 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E AMS64_12565 DNA glycosylase K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E AMS64_02170 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E AMS64_02165 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E AMS64_02175 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E AMS64_03570 recombinase RecA K03553 recA; recombination protein RecA
E AMS64_04455 ruvA; ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AMS64_04460 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AMS64_13695 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E AMS64_01785 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E AMS64_19600 hypothetical protein K02317 dnaT; DNA replication protein DnaT
E AMS64_10155 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E AMS64_17125 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AMS64_17120 metallophosphatase K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E AMS64_03570 recombinase RecA K03553 recA; recombination protein RecA
E AMS64_20060 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E AMS64_00420 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
E AMS64_01835 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AMS64_06275 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E AMS64_05495 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E AMS64_07935 recR; recombination protein RecR K06187 recR; recombination protein RecR
E AMS64_16515 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E AMS64_17110 recombination associated protein K03554 rdgC; recombination associated protein RdgC
E AMS64_04455 ruvA; ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AMS64_04460 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AMS64_13695 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E AMS64_16170 carboxylate--amine ligase K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E AMS64_17125 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AMS64_17120 metallophosphatase K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F AMS64_09290 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F AMS64_00415 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F AMS64_06980 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F AMS64_20045 DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
F AMS64_10835 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F AMS64_06275 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F AMS64_05495 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F AMS64_07935 recR; recombination protein RecR K06187 recR; recombination protein RecR
F AMS64_17630 ligA; aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F AMS64_19640 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F AMS64_09340 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F AMS64_14290 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F AMS64_10155 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F AMS64_01740 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AMS64_09980 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AMS64_20925 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F AMS64_08620 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F AMS64_01080 transcriptional regulator K03746 hns; DNA-binding protein H-NS
F AMS64_16545 transcriptional regulator K03746 hns; DNA-binding protein H-NS
F AMS64_13980 transcriptional regulator K03746 hns; DNA-binding protein H-NS
F AMS64_14240 transcriptional regulator K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D AMS64_18185 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D AMS64_12140 protein UmuC K03502 umuC; DNA polymerase V
D AMS64_18530 protein UmuC K03502 umuC; DNA polymerase V
D AMS64_12135 UV protection and mutation protein K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AMS64_18525 protein impA K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D AMS64_03570 recombinase RecA K03553 recA; recombination protein RecA
D AMS64_01240 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D AMS64_16515 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D AMS64_08555 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D AMS64_20965 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AMS64_12300 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AMS64_08560 damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D AMS64_03575 RecX family transcriptional regulator K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D AMS64_01345 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D AMS64_01115 helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D AMS64_09120 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D AMS64_15295 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D AMS64_03290 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMS64_04620 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMS64_22590 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMS64_06130 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMS64_08215 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMS64_01035 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AMS64_19740 NrdJa K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AMS64_09275 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AMS64_09270 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024