+F Chromosome and associated proteins KO
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Chromosome and Associated Proteins - Achromobacter xylosoxidans NH44784-1996
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AEukaryotic type
B Sister chromatid cohesion proteins
C Cohesin complex
C Adherin complex
C CTF18-RFC complex
C Fork protection complex
C Other sister chromatid cohesion factors
B Meiosis-specific proteins
C Cohesin complex and associated proteins
C Synaptonemal complex
C DSB formation-related proteins
C Others
B Nucleosome assembly factors
C Histones
C Histone chaperones
D Nucleoplasmins
D NAPs (Nucleosome assembly proteins)
D CAF-1
D FACT complex
D Other Histone chaperones and regulators
C HMG (high mobility group) proteins
B Histone modification proteins
C HATs (histone acetyltransferases)
C HAT complexes
D PCAF complex
D STAGA complex
D TFTC complex
D TIP60 complex
D HBO1 complex
D MOZ/MORF complex
D SAGA complex
D SLIK complex
D ADA-HAT complex
D HAT-A2 complex
D ATAC complex
D HATB complex
D NSL complex
D MSL complex
D NuA3 complex
D NuA4 complex
D SAS complex
C HDACs (histone deacetylases)
D Class I HDACs
D Class II HDACs
D SIRTs (sirtuins, class III HDACs)
D Class IV HDACs
C HDAC complexes
D Sin3A-HDAC complex
D BRAF-HDAC complex
D REST complex
D SHIP complex
D MiDAC complex
D SMART complex
D Other HDAC associated proteins
C HMTs (histone methyltransferases)
D HKMTs (histone lysine methyltransferases)
D PRMTs (protein arginine metyltransferases)
C HMT complexes
D COMPASS/SET1 complex
D COMPASS/SET1 complex (yeast)
D MLL-HCF complex
D MLL3/MLL4 complex
D Dot1-containing complex
C Histone demethylases
C Polycomb repressive complex (PRC) and associated proteins
D Canonical PRC1 (PRC1.2/1.4)
E PRC1.4 specific proteins
D Noncanonical PRC1 (PRC1.1)
D Noncanonical PRC1 (PRC1.3/1.5)
D Noncanonical PRC1 (PRC1.6)
D PRC2.1
D PRC2.2
D PR-DUB complex
D Other PRC associated proteins
C Sir proteins
C Other histone modification proteins
B Chromosome condensation proteins
C Condensin I
C Condensin II
C Other regulators of chromosome condensation
B Centromeric chromatin formation proteins
C Kinetochore proteins
D Centromere proteins
D CPC (chromosomal passenger complex)
D KMN network proteins
E MIS12 complex
E NDC80 complex
D Mis6 complex
D COMA complex
D NMS complex
E NDC80 complex
E MIND kinetochore complex
D MIS16-MIS18 complex
D DASH complex
D CBF3 complex
D Others
C SAC (spindle assembly checkpoint) factors
D Core SAC proteins
D Motor proteins
E RZZ complex
E Dynein complex
D Protein kinases
D Others
C Other centromeric chromatin formation proteins
D Shugoshin
D PP2A (protein phosphatase 2A)
B Heterochromatin formation proteins
C HP1 (heterochromatin protein 1)
C MBPs (metylated DNA binding proteins)
C Other heterochromatin formation proteins
D NH44784_008851 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Gene silencing
C RISC (RNA-induced silencing complex)
C piRNA pathway
C RNA interference (RNAi) pathway
D RITS (RNA-induced transcriptional silencing) complex
D RDRC (RNA-directed RNA polymerase complex)
D Other RNAi proteins
C microRNA pathway
D Microprocessor complex
E NH44784_005181 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RISC loading complex
D Other miRNA pathway proteins
C Transposable elements
B Centrosome formation proteins
C Centriole proteins
C Pericentriolar materials (PCM)
D Centriolar satellite
D Other PCM proteins
C Cyclins
C Kinases and associated factors
D Kinase anchoring protein
C Microtubules and associated factors
D gamma-tubulin ring complex
D Other tubulins
D Dynactin complex
D BRISC complex
D Microtubule-associated proteins
C Augmin complex
C Centrosome duplication proteins
D Centriole replication proteins
D Regulators of centriole replication
D Other centrosome duplication proteins
C Nde1-Su48 complex
C LINC complex
C 3M complex
C Other centrosome associated proteins
C Spindle formation proteins
B Sister chromatid separation proteins
C Securin and associated proteins
C Separase
C APC/C complex
C Aurora kinases
D Regulators of Aurora kinases
C TACC proteins
C Polo kinases
C Early mitotic inhibitors
B Chromatin remodeling factors
C BAF complex
C PBAF complex
C GBAF(ncBAF) complex
C CHRAC complex
C RSF complex
C WICH complex
C B-WICH complex
C NORC complex
C BRF complex
C NuRD complex
C NuRF complex
C NuRF complex (fruit fly)
C CERF complex
C SRCAP complex
C INO80 complex
C INO80 complex (yeast)
C RSC complex
C SWI/SNF complex
C SWR1 complex
C ASTRA complex
C Other chromatin remodeling factors
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AProkaryotic type
B Nucleoid associated proteins
C HNS (histone-like nucleoid structuring protein)
D NH44784_001921 putative DNA-binding protein (histone K03746 hns; DNA-binding protein H-NS
C HU (heat unstable protein)
D NH44784_001251 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
C IHF (integration host factor)
D NH44784_039051 Integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
D NH44784_003661 Integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
C Other nucleoid associated proteins
D NH44784_034531 DnaJ-class molecular chaperone CbpA K05516 cbpA; curved DNA-binding protein
D NH44784_034541 FIG00432169: hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM
D NH44784_022051 Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D NH44784_045611 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase K04047 dps; starvation-inducible DNA-binding protein
D NH44784_049641 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase K04047 dps; starvation-inducible DNA-binding protein
D NH44784_011361 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NH44784_037581 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D NH44784_024951 probable LysR-family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D NH44784_019561 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_026291 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_041161 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_013581 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_013921 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_021411 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_043761 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_044371 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_051951 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_046061 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_039231 Transcriptional regulator BkdR of isoleucine and valine catabolism operon K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NH44784_015321 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
B Chromosome partitioning proteins
C MukBEF complex
C Condensin-like complex
D NH44784_005821 Chromosome partition protein smc K03529 smc; chromosome segregation protein
D NH44784_016301 Segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D NH44784_003011 Segregation and condensation protein B K06024 scpB; segregation and condensation protein B
C Divisome proteins
D NH44784_013371 Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D NH44784_004671 Cell division protein FtsB K05589 ftsB; cell division protein FtsB
D NH44784_016551 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1 K09812 ftsE; cell division transport system ATP-binding protein
D NH44784_013461 Cell division protein FtsI [Peptidoglycan synthetase] K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NH44784_007901 Cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D NH44784_013471 Cell division protein FtsL K03586 ftsL; cell division protein FtsL
D NH44784_013381 Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D NH44784_013421 Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D NH44784_016561 Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D NH44784_013361 Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NH44784_013651 FIG017670: hypothetical protein K09888 zapA; cell division protein ZapA
D NH44784_016241 FIG002842: hypothetical protein K18778 zapD; cell division protein ZapD
D NH44784_004301 ATPase, AFG1 family K06916 zapE; cell division protein ZapE
D NH44784_012281 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NH44784_024631 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NH44784_063681 RND efflux system, membrane fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D NH44784_042261 RND efflux system, membrane fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D NH44784_014271 Probable Co/Zn/Cd efflux system membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
C Inhibitors of FtsZ assembly
D NH44784_011501 Septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D NH44784_011511 Septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D NH44784_011521 Cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D NH44784_025111 Transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
C Other chromosome partitioning proteins
D NH44784_025041 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D NH44784_025051 Rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D NH44784_025061 Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D NH44784_025081 Rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D NH44784_022341 Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D NH44784_009321 putative plasmid stabilization protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NH44784_037741 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NH44784_022361 Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NH44784_055651 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NH44784_037201 Topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D NH44784_037181 Topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D NH44784_022321 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NH44784_022331 rRNA small subunit methyltransferase, glucose inhibited division protein GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NH44784_024211 putative integrase/recombinase K03733 xerC; integrase/recombinase XerC
D NH44784_035231 ortholog of Bordetella pertussis (BX470248) BP1540 K04763 xerD; integrase/recombinase XerD
D NH44784_029131 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NH44784_023201 GTP-binding protein EngB K03978 engB; GTP-binding protein
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 30, 2024