+F Repair protein KO
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DNA Repair and Recombination Proteins - Azoarcus sp. CIB
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AzCIB_3219 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AzCIB_3888 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AzCIB_4656 single-strand selective monofunctional uracil DNA glycosylase K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
E AzCIB_4576 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AzCIB_1891 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D AzCIB_0567 thiamine monophosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AzCIB_3279 NUDIX [(Di)nucleoside polyphosphate] hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AzCIB_2694 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AzCIB_3280 deoxyuridine 5-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AzCIB_3219 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AzCIB_2016 O6-methylguanine-DNA methyltransferase/Ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AzCIB_3888 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D AzCIB_2886 Alkylated DNA repair protein alkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E AzCIB_4656 single-strand selective monofunctional uracil DNA glycosylase K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
E AzCIB_2028 DNA polymerase-related protein, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E AzCIB_2015 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E AzCIB_4576 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AzCIB_0525 DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AzCIB_0602 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AzCIB_1891 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AzCIB_0811 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E AzCIB_4286 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E AzCIB_2009 exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E AzCIB_2756 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E AzCIB_0490 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AzCIB_0027 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E AzCIB_4009 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E AzCIB_2813 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E AzCIB_2781 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E AzCIB_1922 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AzCIB_3213 DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AzCIB_0490 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E AzCIB_2756 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F AzCIB_4046 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F AzCIB_4045 DNA-directed RNA polymerase subunit beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F AzCIB_4013 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F AzCIB_0221 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F AzCIB_2065 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AzCIB_2151 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E AzCIB_3559 putative DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E AzCIB_3140 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E AzCIB_3313 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E AzCIB_3207 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E AzCIB_0002 DNA polymerase III (Beta chain) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E AzCIB_1114 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E AzCIB_3217 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E AzCIB_2826 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E AzCIB_0227 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AzCIB_1329 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AzCIB_2153 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AzCIB_2907 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AzCIB_4152 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AzCIB_0753 DNA polymerase III gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E AzCIB_2756 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E AzCIB_1922 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AzCIB_3213 DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AzCIB_4007 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E AzCIB_2557 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E AzCIB_4563 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E AzCIB_0157 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E AzCIB_0156 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E AzCIB_0160 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E AzCIB_4258 recombinase A K03553 recA; recombination protein RecA
E AzCIB_0476 Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
E AzCIB_0475 Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AzCIB_0440 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E AzCIB_4710 primosomal protein N prime K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E AzCIB_0998 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AzCIB_1424 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AzCIB_1425 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AzCIB_0999 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E AzCIB_1426 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E AzCIB_4258 recombinase A K03553 recA; recombination protein RecA
E AzCIB_2025 DNA repair protein, RadA K04485 radA; DNA repair protein RadA/Sms
E AzCIB_4184 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AzCIB_4384 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AzCIB_4733 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AzCIB_2009 exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E AzCIB_2785 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E AzCIB_0755 recombination protein K06187 recR; recombination protein RecR
E AzCIB_3014 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E AzCIB_0021 recombination associated protein K03554 rdgC; recombination associated protein RdgC
E AzCIB_0476 Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
E AzCIB_0475 Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AzCIB_0440 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E AzCIB_0998 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AzCIB_1424 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AzCIB_1425 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AzCIB_0999 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E AzCIB_1426 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E AzCIB_0454 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F AzCIB_3621 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F AzCIB_0003 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
F AzCIB_0359 DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta
F AzCIB_2888 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F AzCIB_2009 exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F AzCIB_2785 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F AzCIB_0755 recombination protein K06187 recR; recombination protein RecR
F AzCIB_2756 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F AzCIB_0798 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F AzCIB_2413 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F AzCIB_3589 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F AzCIB_3615 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
F AzCIB_4542 integration host factor beta-subunit (ihf-beta) K05788 ihfB; integration host factor subunit beta
E Supressor
F AzCIB_1346 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AzCIB_0133 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AzCIB_3724 ATP-dependent DNA helicase protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AzCIB_0027 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F AzCIB_4009 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F AzCIB_2813 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F AzCIB_3222 trans-acting regulatory protein K03746 hns; DNA-binding protein H-NS
F AzCIB_4554 histone-like nucleoid-structuring protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D AzCIB_4143 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D AzCIB_4258 recombinase A K03553 recA; recombination protein RecA
D AzCIB_2162 SOS-response transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D AzCIB_3014 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D AzCIB_2164 hypothetical protein K14160 imuA; protein ImuA
D AzCIB_2165 hypothetical protein K14161 imuB; protein ImuB
D AzCIB_2169 hypothetical protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D AzCIB_4007 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AzCIB_2557 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AzCIB_4563 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AzCIB_4259 regulatory protein, RexX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D AzCIB_0116 hypothetical protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D AzCIB_1860 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D AzCIB_0567 thiamine monophosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AzCIB_3279 NUDIX [(Di)nucleoside polyphosphate] hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AzCIB_2694 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AzCIB_3280 deoxyuridine 5-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AzCIB_2981 ribonucleotide reductase, coenzyme B12-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024