+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Azospirillum sp. B510
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D AZL_011820 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C AZL_011830 era; GTP-binding protein K03595 era; GTPase
C AZL_023280 obg; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C AZL_018380 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C AZL_028570 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C AZL_010140 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C AZL_005670 nusG; transcriptional antiterminator K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D AZL_018600 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D AZL_002370 sun; Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D AZL_019500 tRNA/rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D AZL_013970 rsmC; rRNA (guanine-N2-)-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D AZL_019800 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D AZL_007590 ribosomal RNA small subunit methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D AZL_000130 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D AZL_020740 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D AZL_028060 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D AZL_c01010 tlyA; hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D AZL_005640 yjfH; RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D AZL_020940 ftsJ; cell division protein methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D AZL_023350 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D AZL_003340 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D AZL_014120 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D AZL_011860 RNA 2'-O-ribose methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D AZL_001710 radical SAM enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D AZL_c01010 tlyA; hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D AZL_003330 ygcA; RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D AZL_d00300 rluC; ribosomal large subunit pseudouridine synthase C K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AZL_a07660 rluD; ribosomal large subunit pseudouridine synthase D K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AZL_019810 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D AZL_021170 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D AZL_d04590 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D AZL_026050 rluE; ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D AZL_002810 yfiF; RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C AZL_000470 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C AZL_014200 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C AZL_009550 rimJ; ribosomal-protein-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C AZL_005170 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C AZL_d01680 hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C AZL_a09740 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C AZL_022710 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C AZL_019650 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C AZL_010480 yfcB; adenine-specific DNA-methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
B rRNA processing factors
C AZL_011820 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C AZL_005310 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C AZL_d03690 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C AZL_019290 ruvX; holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C AZL_011830 era; GTP-binding protein K03595 era; GTPase
C AZL_017090 engA; GTP-binding protein K03977 engA; GTPase
C AZL_023280 obg; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C AZL_015000 hflX; GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C AZL_023880 sua5; translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C AZL_011780 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C AZL_016970 hD domain-containing protein 3 K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C AZL_b04490 hypothetical protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C AZL_028600 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C AZL_028560 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C AZL_023360 hypothetical protein K09710 ybeB; ribosome-associated protein
C AZL_028490 metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C AZL_001100 sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C AZL_019980 GTP-dependent nucleic acid-binding protein K06942 ychF; ribosome-binding ATPase
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024