+E Transcription factors KO
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Transcription Factors - Brucella abortus A13334
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BAA13334_II01172 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D BAA13334_I03333 ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BAA13334_II00788 methylated-DNA-protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D BAA13334_II00758 transcriptional regulator LysR K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BAA13334_II01169 transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D BAA13334_II01064 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BAA13334_II01548 Bacterial regulatory protein LysR, HTH motif protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BAA13334_II00921 Transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
C DeoR family
D BAA13334_I00148 DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D BAA13334_I00136 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BAA13334_I03071 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BAA13334_II01616 alanine racemase K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BAA13334_II01676 Ribitol operon repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
C GntR family
D BAA13334_I02214 transcriptional regulator K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D BAA13334_II00714 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D BAA13334_II01358 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BAA13334_II00741 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BAA13334_II00175 Bacterial regulatory protein, GntR family K03710 K03710; GntR family transcriptional regulator
D BAA13334_II00487 GntR domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D BAA13334_I03064 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D BAA13334_I03457 TetR/AcrR family transcriptional regulator, acrAB operon repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D BAA13334_I03478 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D BAA13334_II01436 Bacterial regulatory protein TetR, HTH motif protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D BAA13334_II01040 Proline dehydrogenase transcriptional activator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BAA13334_I01458 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BAA13334_I01310 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D BAA13334_I02582 Transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D BAA13334_II00960 Bacterial regulatory protein, AsnC family K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D BAA13334_II00402 HTH-type quorum sensing-dependent transcriptional regulator vjbR K21697 vjbR; LuxR family transcriptional regulator, quorum-sensing system regulator VjbR
C MarR family
D BAA13334_II00977 transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BAA13334_I01115 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BAA13334_II01421 MarR family regulatory protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BAA13334_II00793 Bacterial regulatory protein, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BAA13334_I00107 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D BAA13334_I01339 Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BAA13334_II00079 Ferric-uptake regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D BAA13334_I00494 iron response regulator K09826 irr; Fur family transcriptional regulator, iron response regulator
D BAA13334_I03339 Ferric uptake regulation protein K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D BAA13334_II01173 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BAA13334_I01358 regulatory protein IclR K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor
C CRP/FNR family
D BAA13334_I02913 CRP/FNR family transcriptional regulator, anaerobic regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BAA13334_II01617 transcriptional activator FtrB K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB
D BAA13334_II01649 CRP/FNR family transcriptional regulator, anaerobic regulatory protein K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
D BAA13334_II01678 bacterial regulatory protein K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
D BAA13334_II01295 rrf2 family protein (transcriptional regulator) K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
C ArsR family
D BAA13334_I01434 transcriptional regulator LysR K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D BAA13334_I02080 putative transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D BAA13334_I01397 putative transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D BAA13334_I02668 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
B Ribbon-helix-helix
C CopG family
D BAA13334_II00913 nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D BAA13334_II01041 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D BAA13334_II01658 FMN-binding domain-containing protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D BAA13334_I00254 Protein of unknown function DUF156 K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D BAA13334_I00755 BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D BAA13334_I00703 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BAA13334_II00214 plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BAA13334_I01158 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D BAA13334_I00196 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BAA13334_I00123 TENA/THI-4 family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BAA13334_II01204 prokaryotic transcription elongation factor GreA/GreB K06140 rnk; regulator of nucleoside diphosphate kinase
D BAA13334_I03158 Putative transcriptional regulator K07735 algH; putative transcriptional regulator
D BAA13334_I02320 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D BAA13334_I02744 putative transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains K07738 nrdR; transcriptional repressor NrdR
D BAA13334_I02578 Sel1 repeat-containing protein K25885 exoR; exopolysaccharide production negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0