+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Burkholderia ambifaria MC40-6

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D BamMC406_1014 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D BamMC406_0958 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C BamMC406_1015 GTP-binding protein Era K03595 era; GTPase C BamMC406_0511 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C BamMC406_2999 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor C BamMC406_4116 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor C BamMC406_1421 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA C BamMC406_0825 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB C BamMC406_0263 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D BamMC406_2405 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D BamMC406_2626 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D BamMC406_3061 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D BamMC406_2427 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D BamMC406_2726 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D BamMC406_0559 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D BamMC406_0095 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BamMC406_0480 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D BamMC406_0996 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D BamMC406_0215 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D BamMC406_1469 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D BamMC406_1185 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D BamMC406_2216 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D BamMC406_2997 PUA domain containing protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D BamMC406_2131 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D BamMC406_0623 putative RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D BamMC406_1725 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D BamMC406_1728 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D BamMC406_1419 RNA-binding S4 domain protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D BamMC406_0992 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D BamMC406_1704 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D BamMC406_2444 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D BamMC406_1924 RNA-binding S4 domain protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C BamMC406_1945 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C BamMC406_0950 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C BamMC406_1695 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C BamMC406_0529 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C BamMC406_1934 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C BamMC406_2001 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C BamMC406_1014 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C BamMC406_0991 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] C BamMC406_2218 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] C BamMC406_0755 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C BamMC406_3249 DEAD/DEAH box helicase domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] B GTPases C BamMC406_1015 GTP-binding protein Era K03595 era; GTPase C BamMC406_0956 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C BamMC406_1719 small GTP-binding protein K03977 engA; GTPase C BamMC406_0511 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] C BamMC406_1717 GTP-binding proten HflX K03665 hflX; GTPase B Other maturation factors C BamMC406_2542 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C BamMC406_5732 metal dependent phosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C BamMC406_0873 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C BamMC406_1423 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C BamMC406_1420 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP C BamMC406_0972 conserved hypothetical protein K14761 rlbA; ribosome-associated protein C BamMC406_2215 iojap-like protein K09710 ybeB; ribosome-associated protein C BamMC406_2612 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor C BamMC406_1184 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein C BamMC406_0960 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein C BamMC406_2710 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor C BamMC406_0453 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C BamMC406_0998 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024