+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacteroidales bacterium CF

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BRDCF_p2088 phr; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BRDCF_p1177 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BRDCF_p211 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BRDCF_p2088 phr; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BRDCF_p1177 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BRDCF_p1995 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BRDCF_p611 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D AP endonucleases E BRDCF_p914 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E BRDCF_p1523 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BRDCF_p1043 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E BRDCF_p203 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E BRDCF_p782 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E BRDCF_p780 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E BRDCF_p2175 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E BRDCF_p1432 pcrA; ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRDCF_p614 helD; Helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRDCF_p1043 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BRDCF_p1542 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BRDCF_p1543 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BRDCF_p1760 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BRDCF_p15 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BRDCF_p28 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS E BRDCF_p1913 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS E BRDCF_p1914 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS E BRDCF_p2161 MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2 E BRDCF_p1069 mutS2; MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BRDCF_p2004 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BRDCF_p577 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BRDCF_p578 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BRDCF_p2206 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BRDCF_p957 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BRDCF_p529 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BRDCF_p103 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BRDCF_p956 exoX; Exonuclease RNAse T And DNA Polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BRDCF_p884 polC; DNA polymerase III polC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BRDCF_p1590 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BRDCF_p1043 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BRDCF_p1432 pcrA; ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRDCF_p614 helD; Helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRDCF_p1528 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BRDCF_p1814 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BRDCF_p1640 recA; Protein RecA K03553 recA; recombination protein RecA E BRDCF_p2306 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E BRDCF_p14 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BRDCF_p1372 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BRDCF_p565 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E BRDCF_p1640 recA; Protein RecA K03553 recA; recombination protein RecA E BRDCF_p180 radA; DNA repair protein RadA-like protein K04485 radA; DNA repair protein RadA/Sms E BRDCF_p1204 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E BRDCF_p2222 Transcriptional Regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BRDCF_p1468 Transcriptional Regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BRDCF_p915 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BRDCF_p133 Transcriptional Regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BRDCF_p1523 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BRDCF_p2166 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E BRDCF_p1300 recR; Recombination protein recR K06187 recR; recombination protein RecR E BRDCF_p1573 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) E BRDCF_p2306 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E BRDCF_p14 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BRDCF_p1372 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E BRDCF_p1865 CRISPR-Associated Cas1 Family Protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E BRDCF_p1694 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BRDCF_p942 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BRDCF_p842 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BRDCF_p167 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BRDCF_p1750 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta F BRDCF_p1174 hupB; Integration Host Factor Beta Subunit K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BRDCF_p1523 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BRDCF_p2166 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F BRDCF_p1300 recR; Recombination protein recR K06187 recR; recombination protein RecR F BRDCF_p1043 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BRDCF_p474 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BRDCF_p1007 ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BRDCF_p203 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F BRDCF_p782 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F BRDCF_p780 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BRDCF_p1040 umuC; Error-prone, lesion bypass DNA polymerase V (UmuC) K03502 umuC; DNA polymerase V D BRDCF_p1038 umuD; Error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D BRDCF_p1640 recA; Protein RecA K03553 recA; recombination protein RecA D BRDCF_p1573 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) D BRDCF_p1528 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BRDCF_p1814 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BRDCF_p1659 DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D BRDCF_p1636 Putative regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D BRDCF_p211 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BRDCF_p2199 nrdZ; Ribonucleoside-diphosphate reductase nrdZ K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D BRDCF_p1413 nrnA; Bifunctional oligoribonuclease and PAP phosphatase nrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024