+F Repair protein KO
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DNA Repair and Recombination Proteins - Bacillus sp. BS34A
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BS34A_15020 ogt; methylated-dna--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BS34A_41150 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BS34A_41830 yxlJ; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BS34A_09610 yfhQ; A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BS34A_24620 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BS34A_33290 ytkD; 8-oxo-dGTP diphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BS34A_37880 yvcI; Nudix hydrolase YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BS34A_04960 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BS34A_19540 yncF; deoxyuridine 5'-triphosphate nucleotidohydrolase YncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BS34A_22170 yosS; deoxyuridine 5'-triphosphate nucleotidohydrolase YosS K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BS34A_15020 ogt; methylated-dna--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BS34A_02380 adaA; bifunctional transcriptional activator/DNA repair enzyme AdaA K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D BS34A_02390 adaB; methylated-dna--protein-cysteine methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BS34A_41150 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BS34A_02370 alkA; DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BS34A_08970 yfjP; DNA-3-methyladenine glycosylase YfjP K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BS34A_41830 yxlJ; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BS34A_09610 yfhQ; A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BS34A_31710 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BS34A_24620 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BS34A_44250 exoAA; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BS34A_27540 yqfS; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E BS34A_39300 ywqL; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E BS34A_22520 yorK; single-strand DNA-specific exonuclease YorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BS34A_30150 recJ; single-stranded-dna-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BS34A_07590 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BS34A_31720 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BS34A_38260 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E BS34A_38270 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E BS34A_31080 uvrC_1; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E BS34A_13060 yjcD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BS34A_36510 helD; helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BS34A_07580 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BS34A_31720 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BS34A_07590 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BS34A_01420 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BS34A_01430 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BS34A_01780 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BS34A_40310 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
F BS34A_17380 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BS34A_00720 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BS34A_18710 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E BS34A_31180 mutSB; methyl-directed mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E BS34A_18720 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BS34A_26680 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BS34A_26670 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BS34A_22510 yorL; DNA polymerase YorL K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BS34A_31860 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BS34A_18260 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E BS34A_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BS34A_27990 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BS34A_00480 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BS34A_00300 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BS34A_07590 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BS34A_13060 yjcD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BS34A_36510 helD; helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BS34A_07580 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BS34A_39450 ssbB; single-stranded DNA-binding protein SsbB K03111 ssb; single-strand DNA-binding protein
E BS34A_44270 ssbA; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BS34A_29990 recD2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E BS34A_18610 recA; recombinase RecA K03553 recA; recombination protein RecA
E BS34A_30280 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BS34A_30270 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BS34A_17400 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BS34A_11790 sbcC; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E BS34A_11780 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E BS34A_18610 recA; recombinase RecA K03553 recA; recombination protein RecA
E BS34A_01210 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E BS34A_00040 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E BS34A_17550 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BS34A_22520 yorK; single-strand DNA-specific exonuclease YorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BS34A_30150 recJ; single-stranded-dna-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BS34A_27690 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E BS34A_00320 recR; recombination protein RecR K06187 recR; recombination protein RecR
E BS34A_26610 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E BS34A_24590 recU; holliday junction resolvase RecU K03700 recU; recombination protein U
E BS34A_30280 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BS34A_30270 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E BS34A_11770 addA; ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E BS34A_11760 addB; ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E BS34A_11790 sbcC; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E BS34A_11780 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E BS34A_14870 ykoV; DNA repair protein YkoV K10979 ku; DNA end-binding protein Ku
E BS34A_14860 ligD; ATP-dependent DNA ligase YkoU K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BS34A_00070 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BS34A_00060 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BS34A_17800 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BS34A_23220 yonN; DNA-binding protein HU 2 K03530 hupB; DNA-binding protein HU-beta
F BS34A_25080 hbs; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BS34A_28750 recombination and repair protein RecT K07455 recT; recombination protein RecT
F BS34A_22520 yorK; single-strand DNA-specific exonuclease YorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BS34A_30150 recJ; single-stranded-dna-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BS34A_27690 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F BS34A_00320 recR; recombination protein RecR K06187 recR; recombination protein RecR
F BS34A_07590 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F BS34A_25330 recQ; ATP-dependent DNA helicase RecS K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BS34A_21310 yocI; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BS34A_38260 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F BS34A_38270 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BS34A_26220 yqjH; DNA polymerase IV 1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D BS34A_23700 uvrX; UV-damage repair protein UvrX K03502 umuC; DNA polymerase V
D BS34A_21000 yobH; DNA repair protein K03502 umuC; DNA polymerase V
C Other SOS response factors
D BS34A_18610 recA; recombinase RecA K03553 recA; recombination protein RecA
D BS34A_19790 lexA; lexa repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D BS34A_26610 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BS34A_39450 ssbB; single-stranded DNA-binding protein SsbB K03111 ssb; single-strand DNA-binding protein
D BS34A_44270 ssbA; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BS34A_09490 recX; regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D BS34A_31190 yshC; DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X)
C DNA helicases
D BS34A_24680 dinG; hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D BS34A_24420 ypvA; ATP-dependent helicase YpvA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D BS34A_33290 ytkD; 8-oxo-dGTP diphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BS34A_37880 yvcI; Nudix hydrolase YvcI K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BS34A_04960 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BS34A_19540 yncF; deoxyuridine 5'-triphosphate nucleotidohydrolase YncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BS34A_22170 yosS; deoxyuridine 5'-triphosphate nucleotidohydrolase YosS K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BS34A_22220 nrdEB_1; ribonucleoside-diphosphate reductase NrdEB subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BS34A_19080 nrdE; ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BS34A_22240 nrdEB_2; ribonucleoside-diphosphate reductase NrdEB subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BS34A_22210 nrdF_3; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BS34A_19090 nrdF_1; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D BS34A_31900 nrnA_1; bifunctional oligoribonuclease and PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024