+E Transcription factors KO
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Transcription Factors - Bacillus sp. YP1
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D QF06_20005 AraC family transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D QF06_01475 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D QF06_20110 AraC family transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D QF06_08310 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D QF06_03655 LysR family transcriptional regulator K19242 citR; LysR family transcriptional regulator, repressor for citA
D QF06_00765 LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D QF06_17265 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D QF06_08290 transcriptional regulator K21959 ftsR; LysR family transcriptional regulator, cell division regulator
D QF06_12910 LysR family transcriptional regulator K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon
C DeoR family
D QF06_06215 DeoR faimly transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D QF06_16620 stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D QF06_18350 DeoR faimly transcriptional regulator K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D QF06_16550 DeoR faimly transcriptional regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D QF06_10805 transcriptional repressor CcpN K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D QF06_00950 DeoR faimly transcriptional regulator K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor
C LacI family
D QF06_15465 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D QF06_16370 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D QF06_13075 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D QF06_13320 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D QF06_09265 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D QF06_04215 NTD biosynthesis operon regulator NtdR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D QF06_05180 LacI family transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D QF06_15365 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D QF06_02785 trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D QF06_18530 GntR family transcriptional regulator K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D QF06_01845 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D QF06_14600 GntR family transcriptional regulator K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator
D QF06_00140 GntR family transcriptional regulator K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator
D QF06_15900 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D QF06_07460 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D QF06_00205 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D QF06_15470 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D QF06_11565 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D QF06_00915 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D QF06_01520 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D QF06_03680 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D QF06_01585 GntR family transcriptional regulator K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC
D QF06_13420 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
D QF06_18485 GntR family transcriptional regulator K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D QF06_12475 TetR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D QF06_02335 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D QF06_00295 TetR family transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D QF06_18450 TetR family transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D QF06_11775 TetR family transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
C Lrp/AsnC family
D QF06_01100 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D QF06_02190 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D QF06_16470 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D QF06_11515 ArsR family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D QF06_12410 LuxR family transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
D QF06_01980 transcriptional regulator K16247 gutR; LuxR family transcriptional regulator, glucitol operon activator
C MarR family
D QF06_16625 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D QF06_03920 transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D QF06_05685 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D QF06_05845 transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D QF06_05590 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D QF06_07775 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D QF06_03720 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D QF06_10200 multidrug transporter K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene
D QF06_16705 MerR family transcriptional regulator K21743 mta; MerR family transcriptional regulator, multidrug-efflux activator
D QF06_11685 transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D QF06_05675 MerR family transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
D QF06_02600 MerR family transcriptional regulator K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D QF06_09945 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D QF06_10735 Fur family transcriptional regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D QF06_03200 Fur family transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
C Rrf2 family
D QF06_03630 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D QF06_11955 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D QF06_01565 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D QF06_11090 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D QF06_08675 ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D QF06_10495 transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D QF06_15565 transcriptional regulator K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator
C PadR family
D QF06_03025 PadR family transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D QF06_04470 DNA-binding protein K10947 K10947; PadR family transcriptional regulator
D QF06_17445 DNA-binding protein K10947 K10947; PadR family transcriptional regulator
C Other families
D QF06_10450 manganese transport transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D QF06_02965 RpiR family transcriptional regulator K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D QF06_09415 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D QF06_04230 hypothetical protein K11925 sgrR; SgrR family transcriptional regulator
D QF06_15190 XRE family transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D QF06_15185 XRE family transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D QF06_13840 transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D QF06_15275 MarR family transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D QF06_15300 MarR family transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D QF06_11745 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D QF06_19240 purine operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D QF06_02920 acetoin dehydrogenase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D QF06_14945 hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA
D QF06_12540 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D QF06_18640 ATPase AAA K06714 rocR; arginine utilization regulatory protein
D QF06_01940 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D QF06_07110 transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor
D QF06_08495 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D QF06_01435 Cro/Cl family transcriptional regulator K07729 K07729; putative transcriptional regulator
D QF06_03380 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D QF06_01295 antitoxin endoai K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D QF06_18010 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D QF06_17660 levansucrase K26931 sacY; levansucrase and sucrase synthesis operon transcriptional antiterminator
D QF06_17475 levansucrase K26932 sacT; sacPA operon transcriptional antiterminator
D QF06_05970 PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator
D QF06_01055 PTS sugar transporter subunit IIA K03483 mtlR; mannitol operon transcriptional activator
D QF06_04980 PTS sugar transporter subunit IIA K02538 manR; mannose operon transcriptional activator
D QF06_17770 PTS fructose transporter subunit IIA K03491 licR; probable licABCH operon transcriptional regulator
C Others
D QF06_15105 transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D QF06_14525 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D QF06_00570 hypothetical protein K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D QF06_06260 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D QF06_19190 transition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D QF06_19285 stage VI sporulation protein D K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D QF06_18920 plasmid partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D QF06_18935 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D QF06_01455 transcription factor YdeB K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D QF06_03575 glycerol-3-phosphate responsive antiterminator GlpP K02443 glpP; glycerol uptake operon antiterminator
D QF06_10315 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D QF06_10925 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D QF06_04775 thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D QF06_04780 transcriptional regulator K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D QF06_19490 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D QF06_15940 membrane protein K03973 pspC; phage shock protein C
D QF06_15355 central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D QF06_18185 RNA polymerase sigma70 K05346 deoR; deoxyribonucleoside regulator
D QF06_04590 transcriptional regulator K05519 med; transcriptional activator of comK gene
D QF06_09580 transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D QF06_06760 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D QF06_17250 Prespore-specific transcriptional regulator RsfA K06314 rsfA; prespore-specific regulator
D QF06_05990 transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D QF06_14385 protease K07734 paiB; transcriptional regulator
D QF06_12700 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D QF06_18140 Hut operon positive regulatory protein K09683 hutP; hut operon positive regulatory protein
D QF06_04135 competence protein K02250 comK; competence protein ComK
D QF06_06590 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
D QF06_14960 membrane protein K26991 yvrL; membrane-bound negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0