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Transfer RNA Biogenesis - Bacillus velezensis UCMB5033
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D RBAU_2351 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D RBAU_2199 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D RBAU_1618 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RBAU_1502 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RBAU_2863 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RBAU_0043 metG; methionyl-tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RBAU_3584 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RBAU_0087 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RBAU_2604 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D RBAU_2589 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RBAU_2190 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RBAU_2736 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RBAU_1829 thrZ; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RBAU_0015 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RBAU_0102 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RBAU_2652 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RBAU_2605 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RBAU_2708 pheS; phenylalanyl-tRNA synthetase (alpha subunit) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RBAU_2707 pheT; phenylalanyl-tRNA synthetase (beta subunit) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RBAU_2816 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RBAU_1102 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D RBAU_2608 dtd; D-Tyr-tRNATyr deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D RBAU_0989 hinT; Hit-family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D RBAU_2839 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D RBAU_0155 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RBAU_1627 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D RBAU_2631 nifS; putative desulfurase involved in iron-sulfur clusters for NAD biosynthesis K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RBAU_2791 iscSB; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RBAU_2600 iscSA; cysteine desulfurase involved in tRNA thiolation K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D RBAU_3547 tsaC; tRNA(NNU) t(6)A37 threonylcarbamoyladenosine modification; threonine-dependent ADP-forming ATPase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RBAU_1696 miaA; tRNA isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RBAU_3931 mnmE; tRNA modification GTPase and tRNA-U34 5-formylation enzyme K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RBAU_3930 trmF; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D RBAU_3934 rnpA; protein component of ribonuclease P (RNase P) (substrate specificity) K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RBAU_misc_RNA_12 RNaseP_bact_b K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D RBAU_2351 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D RBAU_2681 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
C CCA adding factors
D RBAU_2199 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D RBAU_2844 ytlP; 2'-5' RNA-ligase family protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D RBAU_2863 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RBAU_1618 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D RBAU_2816 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RBAU_1102 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RBAU_2736 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RBAU_1829 thrZ; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RBAU_1502 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RBAU_0087 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RBAU_2589 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RBAU_2652 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RBAU_0043 metG; methionyl-tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RBAU_0015 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RBAU_2604 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RBAU_2490 glyQ; glycyl-tRNA synthetase (alpha subunit) K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RBAU_2489 glyS; glycyl-tRNA synthetase (beta subunit) K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RBAU_0102 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RBAU_3584 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RBAU_2708 pheS; phenylalanyl-tRNA synthetase (alpha subunit) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RBAU_2707 pheT; phenylalanyl-tRNA synthetase (beta subunit) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RBAU_2605 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RBAU_2190 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D RBAU_0100 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
C Trans-editing factors
D RBAU_2608 dtd; D-Tyr-tRNATyr deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D RBAU_2560 yjdI; Putative Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D RBAU_0021 tadA; tRNA specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D RBAU_0086 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D RBAU_1662 miaB; enzyme for ms(2)i(6)A formation for tRNA modification K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RBAU_2507 mtaB; tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
C Methyltransferases
D RBAU_1572 trmFO; tRNA:m(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D RBAU_2839 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RBAU_1562 trmD; tRNA(m1G37)methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RBAU_3931 mnmE; tRNA modification GTPase and tRNA-U34 5-formylation enzyme K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RBAU_2482 trmK; tRNA (adenine(22)-N(1))-methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D RBAU_0883 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D RBAU_2709 ysgA; putative RNA methylase K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D RBAU_0155 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RBAU_1627 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D RBAU_2599 mnmA; tRNA 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RBAU_3057 sufA; chaperone involved in Fe-S cluster assembly K13628 iscA; iron-sulfur cluster assembly protein
D RBAU_2631 nifS; putative desulfurase involved in iron-sulfur clusters for NAD biosynthesis K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RBAU_2791 iscSB; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RBAU_2600 iscSA; cysteine desulfurase involved in tRNA thiolation K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Other tRNA modification factors
D RBAU_3930 trmF; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RBAU_1696 miaA; tRNA isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RBAU_2621 queA; S-adenosylmethionine tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RBAU_1328 queC; pre-queuosine 0 synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RBAU_1329 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase; queuosine biosynthesis K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RBAU_1330 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RBAU_1331 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RBAU_0881 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D RBAU_2620 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RBAU_2790 thiI; putative persulfide ATP pyrophosphatase involved in thiamine biosynthesis and tRNA modification K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D RBAU_0072 tilS; tRNAile lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RBAU_0592 tsaB; tRNA(NNU) t(6)A37 threonylcarbamoyladenosine modification; protease involved in TsaD function K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RBAU_3547 tsaC; tRNA(NNU) t(6)A37 threonylcarbamoyladenosine modification; threonine-dependent ADP-forming ATPase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RBAU_0594 tsaD; tRNA(NNU) t(6)A37 threonylcarbamoyladenosine modification; glycation binding protein K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RBAU_0591 tsaE; tRNA(NNU) t(6)A37 threonylcarbamoyladenosine modification; ADP binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RBAU_2603 yrvM; putative factor involved in sulfur-containing coenzyme synthesis K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D RBAU_1469 ylbM; Putative nucleotidyltransferase family protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
B tRNA degradation factors
C RBAU_3225 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C RBAU_1630 pnpA; polynucleotide phosphorylase (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024