+E Transcription factors KO
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Transcription Factors - Bacillus velezensis UCMB5036
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D BAM5036_0797 sau96IM; Modification methylase Sau96I / Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BAM5036_0172 btr; HTH-type transcriptional activator Btr K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D BAM5036_3713 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D BAM5036_1798 gltC; transcriptional regulator (LysR family) K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D BAM5036_2914 putative transcriptional regulator (LysR family) K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D BAM5036_0871 citR; transcriptional regulator CitR (LysR family) K19242 citR; LysR family transcriptional regulator, repressor for citA
D BAM5036_0338 bsdA; HTH-type transcriptional regulator BsdA (LysR family) K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D BAM5036_3413 cysL; regulator of sulfur assimilation CysL, activates cysJI expression K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D BAM5036_1794 ftsR; transcriptional regulator (LysR family) K21959 ftsR; LysR family transcriptional regulator, cell division regulator
D BAM5036_2999 ytlI; transcriptional regulator (LysR family) K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon
C DeoR family
D BAM5036_1125 lacR; Lactose phosphotransferase system repressor K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D BAM5036_1350 fruR; transcriptional regulator (DeoR family) K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D BAM5036_3290 spoIIID; transcriptional regulator K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D BAM5036_3599 iolR; transcriptional regulator (DeoR family) K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D BAM5036_3280 glcR; transcriptional regulator (DeoR family) K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D BAM5036_2274 ccpN; negative regulator of gluconeogenesis K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D BAM5036_0380 ycnK; HTH-type transcriptional repressor ycnK K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor
C LacI family
D BAM5036_0716 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BAM5036_3233 rbsR; transcriptional regulator (LacI family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BAM5036_2624 ccpA; transcriptional regulator (Lacl family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BAM5036_2657 msmR; transcriptional regulator (LacI family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BAM5036_1739 endR; putative HTH-type transcriptional regulator endR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D BAM5036_3096 scrR; Sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D BAM5036_1147 exuR; transcriptional regulator (LacI family) K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D BAM5036_3047 araR; transcriptional repressor of the ara regulon (LacI family) K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D BAM5036_0710 treR; transcriptional regulator (GntR family) K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D BAM5036_1869 yydK; putative transcriptional regulator (GntR family) K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D BAM5036_0544 gmuR; transcriptional regulator (GntR family) K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D BAM5036_2875 frlR; FrlR transcriptional regulator (GntR family) K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator
D BAM5036_3136 nagR; transcriptional regulator (GntR family) K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BAM5036_1603 ymfC; putative transcriptional regulator (GntR family) K03710 K03710; GntR family transcriptional regulator
D BAM5036_3064 yvfI; putative transcriptional regulator (GntR family) K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BAM5036_0373 gabR; transcriptional regulator (GntR/MocR family) with PLP binding site K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BAM5036_0507 putative transcriptional regulator (GntR family) K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BAM5036_0513 ydeL; putative PLP-dependent transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BAM5036_3699 ydfD; putative PLP-dependent transcriptional regulator K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC
D BAM5036_2679 ytrA; transcriptional regulator (GntR family) K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D BAM5036_2501 fadR; transcriptional regulator of fatty acids degradation (TetR/AcrR family) K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D BAM5036_0254 lmrA; transcriptional repressor of lmrAB and yxaGH operons K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D BAM5036_3137 yxaF; Uncharacterized HTH-type transcriptional regulator yxaF K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D BAM5036_2366 bscR; transcriptional regulator for cypB K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
D BAM5036_2598 yttP; putative transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D BAM5036_0407 lrpC; transcriptional regulator (Lrp/AsnC family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BAM5036_0469 lrpA; transcriptional regulator (Lrp/AsnC family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BAM5036_3251 ywrC; putative transcriptional regulator (Lrp/AsnC family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D BAM5036_2488 gerE; transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
D BAM5036_0573 gutR; transcriptional regulator of the glucitol operon K16247 gutR; LuxR family transcriptional regulator, glucitol operon activator
C MarR family
D BAM5036_3292 ywoH; putative transcriptional regulator (MarR family) K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BAM5036_0925 scoC; transcriptional regulator of extracellular protease production, sporulation and bacilysin production (MarR family) K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D BAM5036_1279 mhqR; transcriptional regulator (MarR family) K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BAM5036_1251 ykoM; putative transcriptional regulator (MarR family) K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BAM5036_3398 ywhA; putative transcriptional regulator (MarR family) K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D BAM5036_1231 ohrR; transcriptional regulator sensing organic peroxides K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D BAM5036_0473 Putative transcriptional regulato K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D BAM5036_0829 yhbI; putative transcriptional regulator (MarR family) K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BAM5036_1669 glnR; transcriptional regulator (nitrogen metabolism) K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D BAM5036_0881 cueR; copper efflux transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D BAM5036_0505 yraB; putative transcriptional regulator (MerR family) K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D BAM5036_1248 tnrA; nitrogen sensing transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
D BAM5036_0677 yfmP; transcriptional regulator (MerR family) of metal efflux transporter expression K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D BAM5036_2090 fur; transcriptional regulator for iron transport and metabolism K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BAM5036_2260 zur; transcriptional regulator (Fur family) K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D BAM5036_0791 perR; transcriptional regulator (Fur family) K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D BAM5036_0393 kipR; transcriptional regulator (IclR family) K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D BAM5036_1238 DNA-binding transcriptional activator YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D BAM5036_0866 nsrR; NO-dependent activator of the ResDE regulon K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D BAM5036_2404 cymR; transcriptional regulator of cysteine biosynthesis K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D BAM5036_3505 aseR; transcriptional regulator (metals sensing ArsR-SmtB repressors family) K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BAM5036_1819 czrA; transcriptional regulator (multiple metal-sensing ArsR-SmtB transcriptional repressors family) K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D BAM5036_3647 sdpR; transcriptional regulator (ArsR family) K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
D BAM5036_2215 sinR; HTH-type transcriptional regulator sinR K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D BAM5036_3083 slrR; transcriptional regulator of autolysin genes K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator
C PadR family
D BAM5036_0755 padR; transcriptional regulator of PadC K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D BAM5036_3404 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
C Other families
D BAM5036_2206 mntR; transcriptional regulator (DtxR family) K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D BAM5036_0748 malR; transcriptional activator of the Mal operon K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D BAM5036_1986 birA; biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BAM5036_3009 rghRB; putative transcriptional repressor K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D BAM5036_3008 rghRA; transcriptional repressor K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D BAM5036_2728 yuaC; putative transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D BAM5036_3020 yvaV; putative transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D BAM5036_3025 yvbF; putative transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D BAM5036_2613 putative transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D BAM5036_0050 purR; transcriptional regulator of the purine biosynthesis operon K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D BAM5036_0745 acoR; transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BAM5036_2948 rsoA; regulator of sigma-O K26990 rsoA; sigma-O factor regulatory protein RsoA
D BAM5036_2514 ysfB; putative regulator K02647 cdaR; carbohydrate diacid regulator
D BAM5036_3648 rocR; transcriptional regulator (NtrC/NifA family) K06714 rocR; arginine utilization regulatory protein
D BAM5036_0564 rex; transcription repressor of cydABCD and yjlC-ndh expression K01926 rex; redox-sensing transcriptional repressor
D BAM5036_1537 codY; transcriptional regulator, GTP and BCAA-dependent K03706 codY; transcriptional pleiotropic repressor
D BAM5036_3384 ygzD; Uncharacterized HTH-type transcriptional regulator ygzD K07729 K07729; putative transcriptional regulator
D BAM5036_0818 ygzD; putative HTH-type transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D BAM5036_0453 ndoAI; antitoxin EndoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D BAM5036_3540 licT; transcriptional antiterminator (BglG family) K03488 licT; beta-glucoside operon transcriptional antiterminator
D BAM5036_3453 sacT; transcriptional antiterminator K26932 sacT; sacPA operon transcriptional antiterminator
D BAM5036_1304 glcT; transcriptional antiterminator (BglG family) K03480 glcT; transcriptional antiterminator
D BAM5036_0399 mtlR; transcriptional regulator K03483 mtlR; mannitol operon transcriptional activator
D BAM5036_2360 manR; transcriptional antiterminator K02538 manR; mannose operon transcriptional activator
D BAM5036_3500 licR; transcriptional activator of the lichenan operon K03491 licR; probable licABCH operon transcriptional regulator
C Others
D BAM5036_2983 csoR; repressor of copper utilisation proteins K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D BAM5036_2866 pucR; transcriptional regulator of the purine degradation operon K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D BAM5036_0306 putR; transcriptional activator of proline degradation operon / Regulator of polyketide synthase expression K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D BAM5036_0040 abrB; Transition state regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BAM5036_1360 abh; transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D BAM5036_0059 spoVT; transcriptional regulator K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D BAM5036_3723 parB; site-specific DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BAM5036_3725 noc; DNA-binding protein Spo0J-like K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BAM5036_0483 ydeB; putative transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D BAM5036_0855 glpP; glycerol-3-phosphate responding transcription antiterminator K02443 glpP; glycerol uptake operon antiterminator
D BAM5036_2180 ahrC; transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D BAM5036_1680 xylR; transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D BAM5036_2299 hrcA; transcriptional regulator of heat-shock genes K03705 hrcA; heat-inducible transcriptional repressor
D BAM5036_1066 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BAM5036_1067 tenI; Regulatory protein tenI (inhibitor of thiaminase TenA) K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D BAM5036_0087 ctsR; Transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D BAM5036_3140 yvlC; putative regulator (stress mediated) K03973 pspC; phage shock protein C
D BAM5036_3045 cggR; transcriptional regulator of gapA K05311 cggR; central glycolytic genes regulator
D BAM5036_3571 deoR; transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D BAM5036_1030 med; positive regulator of comK K05519 med; transcriptional activator of comK gene
D BAM5036_2020 mtrB; tryptophan operon RNA-binding attenuation protein (TRAP) K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D BAM5036_1466 pyrR; Uracil phosphoribosyltransferase / Pyrimidine operon regulatory, Bifunctional protein pyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D BAM5036_3403 rsfA; prespore-specific regulatory gene K06314 rsfA; prespore-specific regulator
D BAM5036_1431 gerR; DNA-binding regulator K06314 rsfA; prespore-specific regulator
D BAM5036_1308 splA; TRAP-like transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D BAM5036_0508 paiB; Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator
D BAM5036_2544 nrdR; negative regulator of transcription of ribonucleotide reductase nrd genes and operons K07738 nrdR; transcriptional repressor NrdR
D BAM5036_3562 hutP; transcriptional antiterminator K09683 hutP; hut operon positive regulatory protein
D BAM5036_0963 comK; competence transcription factor (CTF) K02250 comK; competence protein ComK
D BAM5036_1435 mraZ; putative protein involved in cell division or replication K03925 mraZ; transcriptional regulator MraZ
D BAM5036_2952 yvrL; putative integral inner membrane protein K26991 yvrL; membrane-bound negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0