+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Bicyclus anynana (squinting bush brown)

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors E 112055544 mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] E 112053878 mRNA-capping enzyme isoform X1 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] E 112057570 cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E 112046196 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 isoform X1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] E 112046744 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296] D Cap binding complex E 112049510 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1 E 112051435 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2 C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) E 112056147 cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 E 112051357 cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 D Pre-mRNA cleavage factor IIm (CFIIm) E 112054488 protein CLP1 homolog isoform X2 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] E 112048477 pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 D Cleavage and polyadenylation specificity factor (CPSF) complex E 112048851 cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 E 112046917 probable cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E 112045638 cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E 112042899 pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 E 112049135 pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2 E 112058588 WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2 E 112056036 serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 112048418 serine/threonine-protein phosphatase alpha-2 isoform K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 112053942 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] E 112050440 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] D Cleavage stimulation factor (CSTF) complex E 112045684 retrovirus-related Pol polyprotein from transposon 412 isoform X1 K14406 CSTF1; cleavage stimulation factor subunit 1 E 112057763 cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2 E 112058617 protein suppressor of forked K14408 CSTF3; cleavage stimulation factor subunit 3 E 112055527 symplekin isoform X1 K06100 SYMPK; symplekin D U7-dependent histone pre-mRNA processing factors E 112052230 small nuclear ribonucleoprotein-associated protein B K11086 SNRPB; small nuclear ribonucleoprotein B and B' E 112048614 small nuclear ribonucleoprotein Sm D3 isoform X1 K11088 SNRPD3; small nuclear ribonucleoprotein D3 E 112043414 probable small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E E 112052200 small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F E 112053989 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G E 112047309 U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10 E 112051405 U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 E 112046917 probable cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E 112057763 cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2 E 112055527 symplekin isoform X1 K06100 SYMPK; symplekin E 112046228 histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein D DRB sensitivity inducing factor (DSIF) complex E 112043559 transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4 E 112050876 transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5 D N6-methyltransferase complex E 112052401 N6-adenosine-methyltransferase subunit METTL3 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] E 112050642 N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit E 112058026 DNA N6-methyl methyltransferase K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] E 112046226 U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase isoform X2 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] E 112045249 pre-mRNA-splicing regulator female-lethal(2)D K22824 WTAP; pre-mRNA-splicing regulator WTAP E 112052804 protein virilizer K22910 VIRMA; protein virilizer E 112052740 RNA-binding protein spenito K13190 RBM15; RNA-binding protein 15 E 112045229 E3 ubiquitin-protein ligase Hakai K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] D Poly(A) addition factors E 112058093 poly(A) polymerase type 3 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] E 112051276 poly(A) RNA polymerase gld-2 homolog A K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] E 112047592 speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52] D Negative regulators of mRNA 3' end processing E 112050909 RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26 E 112043405 TAR DNA-binding protein 43-like K23600 TARDBP; TAR DNA-binding protein 43 E 112043293 TAR DNA-binding protein 43-like K23600 TARDBP; TAR DNA-binding protein 43 E 112052800 TAR DNA-binding protein 43-like K23600 TARDBP; TAR DNA-binding protein 43 C Other processing factors D 112050790 DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17 D 112054164 methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] D 112052500 zinc finger CCCH domain-containing protein 14 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 D 112046876 serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule B mRNA surveillance and transport factors C Transport factors D EJC complex E 112052998 RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A E 112043324 protein mago nashi K12877 MAGOH; protein mago nashi E 112046225 THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4 E 112050704 ATP-dependent RNA helicase WM6 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] E 112044353 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E 112051155 coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174 E 112045291 putative mediator of RNA polymerase II transcription subunit 12 K14323 CASC3; protein CASC3 E 112043068 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18 E 112050537 pinin K13114 PNN; pinin E 112044461 RNA-binding protein with serine-rich domain 1-A isoform X3 K14325 RNPS1; RNA-binding protein with serine-rich domain 1 E 112046720 serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1 D TREX complex E 112051706 THO complex subunit 1 K12878 THOC1; THO complex subunit 1 E 112053642 THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2 E 112044011 THO complex subunit 3 K12880 THOC3; THO complex subunit 3 E 112046225 THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4 E 112046192 THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5 E 112043744 THO complex subunit 6 K13175 THOC6; THO complex subunit 6 E 112052792 THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7 D TREX-2 complex E 112047761 PCI domain-containing protein 2 homolog K23801 PCID2; nuclear mRNA export protein PCID2/THP1 E 112044099 enhancer of yellow 2 transcription factor K11368 ENY2; enhancer of yellow 2 transcription factor E 112055151 uncharacterized protein LOC112055151 K10840 CETN2; centrin-2 D Nuclear pore complex E 112051655 nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR E 112049847 protein Rae1 K14298 RAE1; mRNA export factor E 112044339 protein SEC13 homolog K14004 SEC13; protein transport protein SEC13 E 112055732 nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85 E 112050966 nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43 E 112050312 nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50 E 112054792 probable nucleoporin Nup54 K14308 NUP54; nuclear pore complex protein Nup54 E 112045368 nuclear pore glycoprotein p62 isoform X1 K14306 NUP62; nuclear pore complex protein Nup62 E 112047748 nucleoporin 88 isoform X1 K14318 NUP88; nuclear pore complex protein Nup88 E 112052479 nuclear pore complex protein Nup93-1 K14309 NUP93; nuclear pore complex protein Nup93 E 112048866 nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96 E 112058064 nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107 E 112050200 nucleoporin Nup188 K14311 NUP188; nuclear pore complex protein Nup188 E 112046300 nuclear pore complex protein Nup153 K14296 NUP153; nuclear pore complex protein Nup153 E 112050082 nuclear pore complex protein Nup154 K14312 NUP155; nuclear pore complex protein Nup155 E 112043155 nuclear pore complex protein Nup160 homolog isoform X1 K14303 NUP160; nuclear pore complex protein Nup160 E 112047396 nucleoporin Nup35 K14313 NUP35; nuclear pore complex protein Nup53 E 112046723 nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205 E 112045315 nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210 E 112048180 nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214 E 112043697 nuclear pore complex protein Nup58 isoform X1 K14307 NUPL1; nucleoporin p58/p45 E 112043599 nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1 E 112047069 nucleoporin SEH1 K14299 SEH1; nucleoporin SEH1 E 112043285 E3 SUMO-protein ligase RanBP2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-] E 112047990 aladin K14320 AAAS; aladin E 112044359 mRNA export factor Gle1 K18723 GLE1; nucleoporin GLE1 E 112046844 nuclear RNA export factor 2 isoform X1 K14284 NXF; nuclear RNA export factor E 112049052 uncharacterized protein LOC112049052 isoform X1 K14284 NXF; nuclear RNA export factor E 112057846 nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor E 112044301 NTF2-related export protein K14285 NXT1_2; NTF2-related export protein 1/2 D Ran-mediated transport factors E 112047046 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran E 112054023 acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D E 112048383 ELAV-like protein 1-B isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 112043663 ELAV-like protein 1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 112054083 protein elav-like K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 112046306 ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 112053427 FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2 E 112055397 transitional endoplasmic reticulum ATPase TER94 K13525 VCP; transitional endoplasmic reticulum ATPase E 112043601 protein N-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] E 112055817 exportin-1 K14290 XPO1; exportin-1 E 112053453 exportin-7-A K18460 XPO7; exportin-7 E 112045593 ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1 D eIF4F and regulatory proteins E 112047404 eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E 112043579 eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E E 112050044 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A E 112047834 eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G E 112051185 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G E 112053082 eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G E 128198900 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G E 112049763 eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B E 112049919 eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H E 112044599 eukaryotic translation initiation factor 4E-binding protein K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 E 112053159 eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter E 112043798 protein angel isoform X1 K18729 ANGEL; protein angel E 112046986 RNA-binding protein FXR1 isoform X3 K15516 FMR; fragile X mental retardation protein E 112048125 LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein K05749 CYFIP; cytoplasmic FMR1 interacting protein E 112043593 cytoplasmic polyadenylation element-binding protein 1-B isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 112053757 cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 112045639 ATP-dependent RNA helicase bel K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E 112053753 GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein E 112046904 polyadenylate-binding protein 1-A K13126 PABPC; polyadenylate-binding protein E 112055189 polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 E 112047212 helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] E 112045868 deformed epidermal autoregulatory factor 1 K23041 DEAF1; deformed epidermal autoregulatory factor 1 E 112050776 malignant T-cell-amplified sequence 1 homolog K07575 MCTS; malignant T-cell-amplified sequence E 112046195 density-regulated protein homolog K24272 DENR; density-regulated protein D APOBEC1-ACF complex D Other transport factors E 112046482 partner of Y14 and mago K14294 WIBG; partner of Y14 and mago E 112057756 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 112057757 heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 112044663 heterogeneous nuclear ribonucleoprotein 27C isoform X4 K14411 MSI; RNA-binding protein Musashi E 112045689 RNA-binding protein Musashi homolog Rbp6-like K14411 MSI; RNA-binding protein Musashi E 112042986 protein HBS1 K14416 HBS1; elongation factor 1 alpha-like protein E 112047082 protein pelota isoform X2 K06965 PELO; protein pelota E 112058005 polyadenylate-binding protein 2-B K14396 PABPN1; polyadenylate-binding protein 2 E 112053943 DEAD-box helicase Dbp80 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] E 112048288 pre-mRNA-splicing factor syf1 homolog K12867 SYF1; pre-mRNA-splicing factor SYF1 E 112057550 SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein E 112046070 regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation E 112047875 la-related protein 6 K18733 LARP6; la-related protein 6 E 112047001 transcriptional activator protein Pur-alpha isoform X5 K21772 PURA; transcriptional activator protein Pur-alpha E 112053002 polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3 E 112050961 uncharacterized protein LOC112050961 isoform X1 K22415 ZC3H11; zinc finger CCCH domain-containing protein 11 E 112046267 leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3 C Surveillance factors D Surveillance complex E 112049370 eukaryotic peptide chain release factor subunit 1 isoform X1 K03265 ETF1; peptide chain release factor subunit 1 E 112048134 eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3 E 112056176 regulator of nonsense transcripts 1 isoform X2 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E 112052477 regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2 E 112051067 regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3 D Protein phosphatase 2A E 112044614 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E 112052613 serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A E 112045423 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 112058452 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 112045289 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 112057089 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X2 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' E 112044304 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' D Other surveillance factors E 112052799 serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 112052166 nonsense-mediated mRNA decay factor SMG5 isoform X1 K11125 SMG5; protein SMG5 E 112052786 telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 112054836 nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7 E 112043581 nonsense-mediated mRNA decay factor SMG8 isoform X1 K18734 SMG8; protein SMG8 E 112056896 nonsense-mediated mRNA decay factor SMG9 isoform X1 K18735 SMG9; protein SMG9 E 112053753 GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein E 112046380 probable ATP-dependent RNA helicase DHX34 isoform X1 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6] E 112056865 GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1 C Factors involved in mRNA localization D Cargo complex E 112049525 protein penguin K14844 PUF6; pumilio homology domain family member 6 E 112045940 unconventional myosin-Va K10357 MYO5; myosin V E 112047142 protein bicaudal D isoform X1 K18739 BICD; protein bicaudal D E 112048403 egalitarian protein homolog K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 E 112043201 piRNA biogenesis protein EXD1-like K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 D Factors that have mRNA localization signals E 112049885 actin-5C K05692 ACTB_G1; actin beta/gamma 1 E 112049886 actin, cytoplasmic A3a K05692 ACTB_G1; actin beta/gamma 1 E 112046269 myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein E 112043550 T-box transcription factor TBX6 isoform X1 K10180 TBX6; T-box protein 6 E 112048276 uncharacterized protein LOC112048276 K18741 NANOS1; protein nanos 1 E 112048945 uncharacterized protein LOC112048945 K18741 NANOS1; protein nanos 1 E 112043569 uncharacterized protein LOC112043569 K18741 NANOS1; protein nanos 1 E 112048538 NADPH oxidase activator-like K09090 HESN; hairy and enhancer of split, invertebrate E 112051896 hairy/enhancer-of-split related with YRPW motif protein 1 K09090 HESN; hairy and enhancer of split, invertebrate E 112045264 enhancer of split mbeta protein-like K09090 HESN; hairy and enhancer of split, invertebrate E 112043553 protein hairy K09090 HESN; hairy and enhancer of split, invertebrate E 112051893 enhancer of split mbeta protein-like K09090 HESN; hairy and enhancer of split, invertebrate D Trans-acting binding proteins E 112056839 far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein E 112043292 elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha E 112054291 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha E 112051765 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma E 112050338 HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1 E 112052481 arf-GAP domain and FG repeat-containing protein 1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 E 112055597 polypyrimidine tract-binding protein 2 isoform X5 K13218 PTBP1; polypyrimidine tract-binding protein 1 E 112050417 RNA-binding protein squid isoform X1 K03102 SQD; squid E 112043593 cytoplasmic polyadenylation element-binding protein 1-B isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 112053757 cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein D Other mRNA localization factors E 112046986 RNA-binding protein FXR1 isoform X3 K15516 FMR; fragile X mental retardation protein E 112048125 LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein K05749 CYFIP; cytoplasmic FMR1 interacting protein E 112051672 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4 E 112049201 caprin homolog K18743 CAPRIN1; caprin-1 E 112058473 CUGBP Elav-like family member 1 isoform X1 K02177 BRU; bruno E 112046888 maternal protein exuperantia-1 K18745 EXU; maternal protein exuperantia E 112047844 Y-box factor homolog K09276 YBX1; Y-box-binding protein 1 E 112045989 sex-lethal homolog K18747 SXL; protein sex-lethal C mRNA cycle factors D Common to processing body (P body) and stress granule E 112043027 protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C E 112044407 protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C E 112047404 eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E 112043579 eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E E 112056176 regulator of nonsense transcripts 1 isoform X2 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E 112045639 ATP-dependent RNA helicase bel K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E 112044808 ATP-dependent RNA helicase me31b K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E 112046830 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] E 112055061 protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14 E 112047844 Y-box factor homolog K09276 YBX1; Y-box-binding protein 1 E 112048300 LIM domain-containing protein jub K16682 AJUBA; LIM domain-containing protein E 112058380 putative helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] E 112044240 transportin-1 K18752 TNPO1; transportin-1 E 112052799 serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 112052166 nonsense-mediated mRNA decay factor SMG5 isoform X1 K11125 SMG5; protein SMG5 E 112052786 telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 112054836 nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7 E 112051814 protein TIS11 K15308 TTP; tristetraprolin E 112048304 protein lin-28 homolog isoform X2 K18754 LIN28; protein lin-28 E 112055863 huntingtin isoform X1 K04533 HD; huntingtin E 112056770 protein bicaudal C isoform X1 K18756 BICC1; protein bicaudal C E 112057756 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 112057757 heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 112048100 cAMP-dependent protein kinase catalytic subunit 1 K04345 PKA; protein kinase A [EC:2.7.11.11] E 112058524 cAMP-dependent protein kinase catalytic subunit alpha-like K04345 PKA; protein kinase A [EC:2.7.11.11] E 112051470 cAMP-dependent protein kinase catalytic subunit 1-like K04345 PKA; protein kinase A [EC:2.7.11.11] E 112051480 cAMP-dependent protein kinase catalytic subunit beta-like K04345 PKA; protein kinase A [EC:2.7.11.11] E 112054185 la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1 D P-body specific factors E 112050140 m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E 112045024 mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] E 112058116 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E 112042830 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E 112045252 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E 112046158 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E 112049065 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 112043749 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E 112049506 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E 112051602 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 E 112052587 kinesin light chain isoform X1 K10407 KLC; kinesin light chain E 112045940 unconventional myosin-Va K10357 MYO5; myosin V E 112056414 tubulin alpha chain K07374 TUBA; tubulin alpha E 112044166 tubulin alpha chain-like K07374 TUBA; tubulin alpha E 112045786 tubulin alpha chain K07374 TUBA; tubulin alpha E 112045875 tubulin alpha-1 chain-like K07374 TUBA; tubulin alpha E 112054335 tubulin alpha-1A chain K07374 TUBA; tubulin alpha E 112043593 cytoplasmic polyadenylation element-binding protein 1-B isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 112053757 cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 112048119 protein Gawky isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein E 112043807 CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E 112047364 regulator of gene activity isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E 112044045 uncharacterized protein DDB_G0288805 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E 112050357 CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 112055969 CCR4-NOT transcription complex subunit 7-like isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 112051065 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 112044939 DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] E 112050597 PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] E 112054302 PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 E 112048602 protein Tob1 K14443 TOB; protein Tob/BTG E 112053159 eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter E 112047611 putative uncharacterized protein DDB_G0287457 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 E 112044836 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3 E 112049351 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4 E 112052477 regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2 E 112051067 regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3 E 112047156 protein wech K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] E 112045027 RING finger protein nhl-1 isoform X1 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] E 112044380 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 E 112058448 YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein D Stress granule specific factors E 112056858 nucleolysin TIAR K13201 TIA1; nucleolysin TIA-1/TIAR E 112046177 cytotoxic granule associated RNA binding protein TIA1 K13201 TIA1; nucleolysin TIA-1/TIAR E 112046904 polyadenylate-binding protein 1-A K13126 PABPC; polyadenylate-binding protein E 112046986 RNA-binding protein FXR1 isoform X3 K15516 FMR; fragile X mental retardation protein E 112047314 eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A E 112056260 eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B E 112050044 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A E 112044353 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E 112049763 eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B E 112047834 eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G E 112051185 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G E 112053082 eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G E 128198900 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G E 112057941 ribosomal protein S6 kinase 2 beta K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 112044613 guanine nucleotide-binding protein subunit beta-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein E 112046844 nuclear RNA export factor 2 isoform X1 K14284 NXF; nuclear RNA export factor E 112049052 uncharacterized protein LOC112049052 isoform X1 K14284 NXF; nuclear RNA export factor E 112057846 nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor E 112050121 histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] E 112048712 tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3 B mRNA degradation factors C 5'-3' decay D Decapping complex E 112045024 mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] E 112050140 m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E 112044808 ATP-dependent RNA helicase me31b K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E 112044836 enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3 E 112049351 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4 E 112047611 putative uncharacterized protein DDB_G0287457 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 D Lsm complex E 112058116 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E 112042830 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E 112045252 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E 112046158 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E 112049065 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 112043749 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E 112049506 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E 112051602 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 D 5' exonucleases E 112054779 5'-3' exoribonuclease 2 homolog K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] D Other 5'-3' decay factors E 112045047 m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] C 3'-5' decay D Core exosome factors E 112045393 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4 E 112055414 exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E 112057901 exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40 E 112046843 exosome complex component RRP41 isoform X1 K11600 RRP41; exosome complex component RRP41 E 112054628 exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46 E 112050454 exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3 E 112052509 exosome complex component RRP42 isoform X1 K12589 RRP42; exosome complex component RRP42 E 112052204 exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43 E 112049278 exosome complex component RRP45 isoform X1 K03678 RRP45; exosome complex component RRP45 D Exosome cofactors E 112048496 exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] E 112045724 exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] E 112053363 M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type D TRAMP complex E 112049868 non-canonical poly(A) RNA polymerase protein Trf4-1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E 112052164 exosome RNA helicase MTR4 isoform X1 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] D Ski complex E 112047212 helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] E 112052268 tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3 E 112056032 WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61 D Ccr4-NOT complex E 112050357 CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 112043807 CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E 112047364 regulator of gene activity isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E 112044045 uncharacterized protein DDB_G0288805 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E 112055969 CCR4-NOT transcription complex subunit 7-like isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 112051065 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 112055458 CCR4-NOT transcription complex subunit 9-like K12606 RCD1; CCR4-NOT transcription complex subunit 9 E 112049921 CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10 D Pan complex E 112050597 PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] E 112054302 PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 D Other 3'-5' decay factors E 112049522 poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] E 112052135 pre-piRNA 3'-exonuclease trimmer K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] E 112048987 ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] E 112048602 protein Tob1 K14443 TOB; protein Tob/BTG E 112045047 m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] E 112058544 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] E 112054463 LOW QUALITY PROTEIN: protein Smaug K27396 SMG; protein Smaug E 112044843 focadhesin isoform X1 K27498 FOCAD; focadhesin C Other degradation factors D RNases E 112045239 probable ribonuclease ZC3H12D isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E 112044033 ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] E 112050406 probable oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases D Other RNA degradosome components E 112046182 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E 112054364 polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E 112046902 ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E 112053457 heat shock 70 kDa protein cognate 5 K04043 dnaK; molecular chaperone DnaK E 128199526 heat shock 70 kDa protein cognate 5-like isoform X1 K04043 dnaK; molecular chaperone DnaK E 112047473 63 kDa chaperonin, mitochondrial-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E 112051834 heat shock protein 60A K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Others D Bacterial Small RNA Regulators B Archeal mRNA degradation factors C Exosome components D Core exosome E 112055414 exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E 112045393 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4 D Cofactors E 112046843 exosome complex component RRP41 isoform X1 K11600 RRP41; exosome complex component RRP41 E 112052509 exosome complex component RRP42 isoform X1 K12589 RRP42; exosome complex component RRP42 D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024