+D Transcription factors KO #

  Transcription Factors - Bacillus velezensis FZB42

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D RBAM_002130 AraC family transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon D RBAM_037970 methylphosphotriester-DNA--protein-cysteine methyltransferase family protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C LysR family D RBAM_018630 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon D RBAM_009690 LysR family transcriptional regulator K19242 citR; LysR family transcriptional regulator, repressor for citA D RBAM_003790 LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD D RBAM_034830 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D RBAM_018580 LysR family transcriptional regulator K21959 ftsR; LysR family transcriptional regulator, cell division regulator D RBAM_030860 LysR family transcriptional regulator K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon C DeoR family D RBAM_012190 DeoR/GlpR transcriptional regulator K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor D RBAM_014120 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D RBAM_033620 spoIIID; sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D RBAM_036790 DeoR/GlpR transcriptional regulator K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor D RBAM_033520 DeoR/GlpR transcriptional regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D RBAM_023550 helix-turn-helix transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D RBAM_004210 DeoR/GlpR transcriptional regulator K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor C LacI family D RBAM_008050 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RBAM_026860 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RBAM_027180 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RBAM_033080 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RBAM_018000 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D RBAM_031840 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D RBAM_012400 LacI family transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor C GntR family D RBAM_031330 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D RBAM_007990 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D RBAM_019370 GntR family transcriptional regulator K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA D RBAM_006170 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization D RBAM_029620 phoB; transcriptional regulator PhoB K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator D RBAM_032220 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D RBAM_016660 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D RBAM_031490 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RBAM_004140 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RBAM_005770 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RBAM_005860 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RBAM_027400 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator C TetR/AcrR family D RBAM_025610 TetR/AcrR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D RBAM_002990 TetR/AcrR family transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor D RBAM_032230 TetR/AcrR family transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor D RBAM_024270 TetR/AcrR family transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon C Lrp/AsnC family D RBAM_004470 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RBAM_005220 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RBAM_033280 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D RBAM_025480 gerE; spore germination protein GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein D RBAM_006530 NACHT domain-containing protein K16247 gutR; LuxR family transcriptional regulator, glucitol operon activator C MarR family D RBAM_010230 HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr D RBAM_013160 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D RBAM_013430 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D RBAM_034680 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D RBAM_005270 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RBAM_009270 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RBAM_012960 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D RBAM_017250 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D RBAM_009790 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator D RBAM_005750 MerR family transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator D RBAM_013130 MerR family transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator D RBAM_007640 MerR family transcriptional regulator K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon C Fur family D RBAM_021640 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RBAM_023410 transcriptional repressor K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D RBAM_008820 perR; peroxide-responsive transcriptional repressor PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family C CRP/FNR family D RBAM_013030 yeiL; transcriptional regulator YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator C Rrf2 family D RBAM_009640 nsrR; nitric oxide-sensing transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D RBAM_024630 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D RBAM_035850 winged helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RBAM_018890 winged helix-turn-helix transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D RBAM_022930 helix-turn-helix domain-containing protein K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation D RBAM_031680 helix-turn-helix domain-containing protein K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator C PadR family D RBAM_008450 PadR family transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator D RBAM_034740 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D RBAM_035250 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D RBAM_022840 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D RBAM_008370 MurR/RpiR family transcriptional regulator K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator D RBAM_020590 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RBAM_030940 helix-turn-helix transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator D RBAM_030950 helix-turn-helix transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator D RBAM_028170 GbsR/MarR family transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator D RBAM_031060 GbsR/MarR family transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator D RBAM_031110 GbsR/MarR family transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator D RBAM_026760 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D RBAM_000560 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D RBAM_008340 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D RBAM_030360 hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA D RBAM_025740 hypothetical protein K02647 cdaR; carbohydrate diacid regulator D RBAM_037260 sigma-54-dependent transcriptional regulator K06714 rocR; arginine utilization regulatory protein D RBAM_006420 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D RBAM_016000 codY; GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor D RBAM_034550 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator D RBAM_38355 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D RBAM_004990 CopG family ribbon-helix-helix protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family D RBAM_036200 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator D RBAM_035300 transcription antiterminator K26932 sacT; sacPA operon transcriptional antiterminator D RBAM_013650 transcription antiterminator K03480 glcT; transcriptional antiterminator D RBAM_004390 transcription antiterminator K03483 mtlR; mannitol operon transcriptional activator D RBAM_024210 BglG family transcription antiterminator K02538 manR; mannose operon transcriptional activator D RBAM_035800 transcription antiterminator K03491 licR; probable licABCH operon transcriptional regulator C Others D RBAM_030700 csoR; copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D RBAM_029510 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RBAM_003470 PucR family transcriptional regulator K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator D RBAM_000460 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D RBAM_014220 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D RBAM_000650 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D RBAM_038070 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RBAM_038090 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RBAM_005410 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D RBAM_009530 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D RBAM_022580 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism D RBAM_017340 ROK family protein K02565 nagC; N-acetylglucosamine repressor D RBAM_023790 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D RBAM_011660 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D RBAM_011670 tenI; thiazole tautomerase TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] D RBAM_001080 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D RBAM_031310 sugar-binding transcriptional regulator K05311 cggR; central glycolytic genes regulator D RBAM_036490 sugar-binding transcriptional regulator K05346 deoR; deoxyribonucleoside regulator D RBAM_011300 BMP family ABC transporter substrate-binding protein K05519 med; transcriptional activator of comK gene D RBAM_020930 mtrB; trp RNA-binding attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D RBAM_015300 pyrR; bifunctional pyrimidine operon transcriptional regulator/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D RBAM_034730 RsfA family transcriptional regulator K06314 rsfA; prespore-specific regulator D RBAM_013690 transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon D RBAM_005780 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D RBAM_026040 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D RBAM_036400 hutP; hut operon transcriptional regulator HutP K09683 hutP; hut operon positive regulatory protein D RBAM_010600 competence protein K02250 comK; competence protein ComK D RBAM_014990 transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ D RBAM_030400 hypothetical protein K26991 yvrL; membrane-bound negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0