+D GENES KO
#
KEGG Orthology (KO) - Bifidobacterium animalis subsp. lactis BB-12
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:bbb00010]
D BIF_02104 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BIF_01437 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BIF_01901 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D BIF_00940 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BIF_00277 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D BIF_00415 histidine phosphatase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BIF_01127 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BIF_01197 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BIF_00125 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BIF_00419 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BIF_00382 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BIF_02099 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D BIF_00899 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D BIF_01321 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BIF_02615 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
C 00020 Citrate cycle (TCA cycle) [PATH:bbb00020]
D BIF_01003 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D BIF_00057 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D BIF_00445 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BIF_01073 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D BIF_01074 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D BIF_01064 FAD-binding protein K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BIF_01063 4Fe-4S dicluster domain-containing protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
C 00030 Pentose phosphate pathway [PATH:bbb00030]
D BIF_02104 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BIF_00790 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BIF_00792 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D BIF_01147 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D BIF_01279 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D BIF_00963 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D BIF_00287 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D BIF_00267 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D BIF_00105 phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D BIF_00857 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D BIF_01321 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BIF_01056 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BIF_00739 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BIF_01437 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
C 00040 Pentose and glucuronate interconversions [PATH:bbb00040]
D BIF_01523 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BIF_00196 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BIF_01647 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D BIF_01279 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D BIF_01646 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D BIF_00829 xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D BIF_00501 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
C 00051 Fructose and mannose metabolism [PATH:bbb00051]
D BIF_00941 cellulase family glycosylhydrolase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D BIF_00330 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BIF_01402 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D BIF_01161 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D BIF_00501 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D BIF_01437 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BIF_01901 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:bbb00052]
D BIF_00899 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D BIF_01979 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D BIF_01978 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D BIF_01311 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BIF_00196 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BIF_01321 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BIF_01526 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BIF_00647 DUF4981 domain-containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BIF_00799 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D BIF_01474 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D BIF_02191 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D BIF_01624 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D BIF_00525 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D BIF_01865 GH32 C-terminal domain-containing protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D BIF_02268 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D BIF_00496 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D BIF_01621 alpha-amylase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D BIF_01597 alpha-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism [PATH:bbb00053]
D BIF_01523 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BIF_01577 GDP-mannose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D BIF_01647 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
C 00500 Starch and sucrose metabolism [PATH:bbb00500]
D BIF_01865 GH32 C-terminal domain-containing protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D BIF_02268 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D BIF_00496 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D BIF_01621 alpha-amylase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D BIF_02090 sucrose phosphorylase K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7]
D BIF_00196 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BIF_01607 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BIF_01664 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BIF_02125 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D BIF_00244 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D BIF_00132 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BIF_00871 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D BIF_01617 pullulanase K01200 pulA; pullulanase [EC:3.2.1.41]
D BIF_00181 pullulanase K01200 pulA; pullulanase [EC:3.2.1.41]
D BIF_00500 alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D BIF_01597 alpha-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D BIF_00869 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D BIF_01314 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D BIF_01519 DUF3416 domain-containing protein K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D BIF_00645 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D BIF_00611 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D BIF_01373 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D BIF_01321 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BIF_02104 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BIF_00330 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:bbb00520]
D BIF_00491 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D BIF_00330 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BIF_00755 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D BIF_00530 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D BIF_00738 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D BIF_02395 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D BIF_00678 FAD-binding protein K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D BIF_01649 alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D BIF_00092 glycoside hydrolase family 43 protein K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D BIF_00405 glycoside hydrolase family 43 protein K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D BIF_02615 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D BIF_01321 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BIF_00196 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BIF_01523 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BIF_01979 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D BIF_01978 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D BIF_01311 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BIF_02191 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D BIF_01577 GDP-mannose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D BIF_02104 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BIF_01402 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D BIF_01161 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D BIF_00244 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:bbb00620]
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BIF_00155 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D BIF_02099 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D BIF_00693 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D BIF_00008 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BIF_00125 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BIF_01199 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D BIF_00419 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BIF_00382 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BIF_01297 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D BIF_01494 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:bbb00630]
D BIF_01003 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D BIF_00057 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D BIF_01198 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D BIF_01199 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D BIF_01920 HAD hydrolase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D BIF_02012 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_00348 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BIF_01867 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D BIF_00592 oxc; oxalyl-CoA decarboxylase K01577 oxc; oxalyl-CoA decarboxylase [EC:4.1.1.8]
C 00640 Propanoate metabolism [PATH:bbb00640]
D BIF_00693 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D BIF_00008 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BIF_00155 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D BIF_01199 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D BIF_01198 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D BIF_01074 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D BIF_01073 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D BIF_00419 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BIF_00382 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:bbb00650]
D BIF_02099 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D BIF_01064 FAD-binding protein K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BIF_01063 4Fe-4S dicluster domain-containing protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BIF_00155 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D BIF_00863 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BIF_01769 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D BIF_02081 acetoin reductase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:bbb00660]
D BIF_00863 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BIF_01769 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D BIF_01074 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D BIF_01073 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D BIF_02390 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D BIF_01510 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D BIF_02900 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:bbb00562]
D BIF_01342 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D BIF_00908 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D BIF_01901 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:bbb00190]
D BIF_01064 FAD-binding protein K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BIF_01063 4Fe-4S dicluster domain-containing protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BIF_01340 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D BIF_00327 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D BIF_00544 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D BIF_01339 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D BIF_01897 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D BIF_01337 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D BIF_01338 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D BIF_01896 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D BIF_01115 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D BIF_01426 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:bbb00680]
D BIF_01197 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BIF_01297 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D BIF_01437 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BIF_00693 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D BIF_00008 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BIF_00415 histidine phosphatase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BIF_01127 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BIF_01365 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BIF_01399 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BIF_02600 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:bbb00910]
D BIF_01557 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D BIF_02012 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_00348 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_00554 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D BIF_00406 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D BIF_01655 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:bbb00920]
D BIF_02068 NrtA/SsuA/CpmA family ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D BIF_00922 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D BIF_00066 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D BIF_01336 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D BIF_00399 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:bbb00061]
D BIF_01199 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D BIF_00783 type I polyketide synthase K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D BIF_01159 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00385 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00380 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00162 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:bbb00071]
D BIF_01159 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00385 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00380 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00162 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_02099 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:bbb00121]
D BIF_00207 choloylglycine hydrolase family protein K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:bbb00561]
D BIF_00918 HAD-IIA family hydrolase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D BIF_02264 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D BIF_01383 glycosyltransferase K19003 mgdA; 1,2-diacylglycerol 3-beta-glucosyltransferase [EC:2.4.1.336]
D BIF_01624 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D BIF_00525 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:bbb00564]
D BIF_02405 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D BIF_02264 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D BIF_01504 alpha/beta hydrolase K01048 pldB; lysophospholipase [EC:3.1.1.5]
D BIF_02013 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D BIF_01830 CDP-alcohol phosphatidyltransferase family protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D BIF_00018 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D BIF_01276 CDP-alcohol phosphatidyltransferase family protein K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:bbb00600]
D BIF_01487 glucan endo-1,6-beta-glucosidase K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D BIF_01558 glycoside hydrolase K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D BIF_01526 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BIF_00647 DUF4981 domain-containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BIF_01624 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D BIF_00525 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D BIF_00412 thioesterase family protein K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:bbb00230]
D BIF_00208 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D BIF_01321 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BIF_01056 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BIF_00739 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BIF_01091 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D BIF_00947 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D BIF_00367 purT; formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D BIF_00341 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D BIF_00948 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D BIF_01181 purK; 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D BIF_01180 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D BIF_00342 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D BIF_00886 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D BIF_00506 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BIF_01075 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D BIF_02230 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D BIF_00523 laccase domain-containing protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D BIF_01895 nucleoside hydrolase K25589 inuH; inosine/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]
D BIF_00577 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D BIF_00769 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BIF_02112 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BIF_01302 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D BIF_02715 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D BIF_00705 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BIF_01846 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D BIF_01349 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BIF_01348 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BIF_01471 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D BIF_01789 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D BIF_01195 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D BIF_02086 GTP pyrophosphokinase family protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D BIF_01438 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D BIF_02730 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D BIF_00325 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00240 Pyrimidine metabolism [PATH:bbb00240]
D BIF_01973 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D BIF_00454 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D BIF_00850 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D BIF_01872 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D BIF_00849 amidohydrolase family protein K01465 URA4; dihydroorotase [EC:3.5.2.3]
D BIF_00173 dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D BIF_02073 dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D BIF_02895 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D BIF_00893 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D BIF_02157 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D BIF_00269 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D BIF_00848 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D BIF_01915 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D BIF_02184 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D BIF_00104 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D BIF_02230 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D BIF_01895 nucleoside hydrolase K25589 inuH; inosine/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]
D BIF_01268 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D BIF_01471 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D BIF_00943 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D BIF_01349 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BIF_01348 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BIF_01805 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D BIF_01790 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BIF_01243 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:bbb00250]
D BIF_01460 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BIF_01444 pyridoxal phosphate-dependent aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BIF_02076 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BIF_00795 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D BIF_00681 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BIF_00354 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BIF_01438 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D BIF_00886 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D BIF_00850 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D BIF_01872 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D BIF_00554 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D BIF_00406 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D BIF_01557 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D BIF_02012 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_00348 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_01973 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D BIF_00454 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D BIF_00755 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D BIF_01091 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:bbb00260]
D BIF_02134 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BIF_01496 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BIF_01299 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D BIF_01300 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D BIF_00882 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D BIF_01760 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D BIF_00415 histidine phosphatase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BIF_01127 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BIF_01365 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BIF_01399 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BIF_02600 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BIF_01867 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D BIF_00615 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D BIF_01193 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D BIF_01598 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D BIF_00031 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D BIF_00318 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:bbb00270]
D BIF_00733 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BIF_00320 pyridoxal phosphate-dependent aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BIF_00916 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BIF_00615 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D BIF_00275 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D BIF_01203 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D BIF_01100 mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D BIF_00523 laccase domain-containing protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D BIF_00727 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117]
D BIF_01698 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BIF_01888 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D BIF_02134 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BIF_01496 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BIF_01299 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D BIF_01336 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D BIF_00399 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D BIF_01213 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D BIF_00034 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D BIF_00734 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D BIF_01826 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BIF_01389 gamma-glutamylcysteine synthetase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D BIF_01460 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BIF_01444 pyridoxal phosphate-dependent aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BIF_00419 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BIF_00382 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BIF_01193 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D BIF_01365 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BIF_01399 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:bbb00280]
D BIF_01826 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BIF_01198 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D BIF_01199 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:bbb00290]
D BIF_01598 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D BIF_02390 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D BIF_01510 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D BIF_02900 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D BIF_00863 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BIF_01769 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D BIF_01396 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D BIF_00467 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D BIF_01826 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BIF_02076 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BIF_01494 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:bbb00300]
D BIF_01299 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D BIF_02134 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BIF_01496 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BIF_00297 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D BIF_00298 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D BIF_00154 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D BIF_00862 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D BIF_02435 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D BIF_00860 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D BIF_02022 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D BIF_01077 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BIF_00378 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00220 Arginine biosynthesis [PATH:bbb00220]
D BIF_00861 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D BIF_00681 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BIF_00354 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BIF_02012 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_00348 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_01973 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D BIF_00454 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D BIF_01557 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D BIF_01460 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BIF_01444 pyridoxal phosphate-dependent aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BIF_02076 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BIF_00810 argJ; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D BIF_00894 GNAT family N-acetyltransferase K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1]
D BIF_00809 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D BIF_01029 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D BIF_00862 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:bbb00330]
D BIF_00260 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D BIF_01459 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D BIF_00883 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D BIF_01460 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BIF_01444 pyridoxal phosphate-dependent aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:bbb00340]
D BIF_02247 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D BIF_02246 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D BIF_01259 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D BIF_00845 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D BIF_00844 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D BIF_01260 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D BIF_00842 hisB; imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D BIF_00143 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BIF_00107 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D BIF_01627 class II glutamine amidotransferase K07008 egtC; gamma-glutamyl hercynylcysteine S-oxide hydrolase [EC:3.5.1.118]
C 00350 Tyrosine metabolism [PATH:bbb00350]
D BIF_01460 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BIF_01444 pyridoxal phosphate-dependent aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BIF_00143 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BIF_02099 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00360 Phenylalanine metabolism [PATH:bbb00360]
D BIF_01460 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BIF_01444 pyridoxal phosphate-dependent aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BIF_00143 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:bbb00400]
D BIF_02096 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BIF_02097 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BIF_00638 bifunctional shikimate kinase/3-dehydroquinate synthase K13829 aroKB; shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
D BIF_01823 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D BIF_00329 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D BIF_00637 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D BIF_00560 chorismate-binding protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D BIF_01409 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D BIF_00845 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D BIF_00031 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D BIF_00318 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D BIF_01818 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D BIF_00702 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D BIF_00146 prephenate dehydrogenase/arogenate dehydrogenase family protein K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D BIF_01460 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BIF_01444 pyridoxal phosphate-dependent aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BIF_00143 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism [PATH:bbb00430]
D BIF_00008 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BIF_00693 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:bbb00450]
D BIF_00399 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D BIF_00733 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BIF_00320 pyridoxal phosphate-dependent aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BIF_00916 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BIF_00275 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D BIF_00622 sufS; SufS family cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D BIF_02198 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D BIF_00641 FAD-dependent oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D BIF_02960 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:bbb00460]
D BIF_01607 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BIF_01664 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BIF_02125 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00470 D-Amino acid metabolism [PATH:bbb00470]
D BIF_02122 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D BIF_01368 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BIF_00547 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D BIF_00509 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D BIF_01419 DUF4392 domain-containing protein K22210 DGLUCY; D-glutamate cyclase [EC:4.2.1.48]
D BIF_00860 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D BIF_02022 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:bbb00480]
D BIF_01389 gamma-glutamylcysteine synthetase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D BIF_00521 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D BIF_00445 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D BIF_01147 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D BIF_00790 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:bbb00515]
D BIF_00930 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:bbb00514]
D BIF_00930 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:bbb00511]
D BIF_01526 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BIF_00647 DUF4981 domain-containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BIF_01487 glucan endo-1,6-beta-glucosidase K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D BIF_01558 glycoside hydrolase K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:bbb00542]
D BIF_00770 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:bbb00541]
D BIF_00196 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BIF_01311 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BIF_02191 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D BIF_01523 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D BIF_01577 GDP-mannose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D BIF_01544 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BIF_01541 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BIF_01543 sugar nucleotide-binding protein K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D BIF_01402 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D BIF_01161 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D BIF_00738 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:bbb00550]
D BIF_02395 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D BIF_00678 FAD-binding protein K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D BIF_00646 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D BIF_00509 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D BIF_01077 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BIF_01368 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BIF_00378 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D BIF_00373 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D BIF_01744 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BIF_02213 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BIF_00379 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BIF_02825 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D BIF_00315 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BIF_01570 penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D BIF_01386 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D BIF_00786 DUF1727 domain-containing protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D BIF_00785 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D BIF_00564 aminoacyltransferase K12554 murN; alanine adding enzyme [EC:2.3.2.-]
C 00552 Teichoic acid biosynthesis [PATH:bbb00552]
D BIF_01744 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BIF_02213 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BIF_00770 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:bbb00543]
D BIF_00770 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:bbb00730]
D BIF_02010 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D BIF_01179 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D BIF_02835 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D BIF_00939 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D BIF_00325 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D BIF_00231 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:bbb00740]
D BIF_00762 bifunctional riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D BIF_01684 nitroreductase family protein K19285 nfrA1; FMN reductase (NADPH) [EC:1.5.1.38]
D BIF_02835 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D BIF_00208 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:bbb00750]
D BIF_00789 pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D BIF_00226 aldo/keto reductase K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]
D BIF_01399 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BIF_00882 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D BIF_01575 pdxS; pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D BIF_01576 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:bbb00760]
D BIF_01305 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D BIF_02230 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D BIF_00366 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D BIF_00629 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D BIF_00593 NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D BIF_01313 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D BIF_00840 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D BIF_01546 Sir2 family NAD-dependent protein deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D BIF_00726 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D BIF_00112 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D BIF_00111 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D BIF_00441 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:bbb00770]
D BIF_00863 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BIF_01769 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D BIF_01396 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D BIF_00467 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D BIF_01223 ketopantoate reductase family protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D BIF_01412 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D BIF_01250 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D BIF_00408 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D BIF_00819 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D BIF_01826 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:bbb00780]
D BIF_01466 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:bbb00785]
D BIF_00118 lipoate--protein ligase family protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BIF_01867 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:bbb00790]
D BIF_00485 diguanylate cyclase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3]
D BIF_01242 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D BIF_02001 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D BIF_01567 glutamine amidotransferase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
C 00670 One carbon pool by folate [PATH:bbb00670]
D BIF_01242 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D BIF_01353 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D BIF_01088 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D BIF_00506 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BIF_01284 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D BIF_01243 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D BIF_00317 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D BIF_02470 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism
D BIF_01514 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
D BIF_02515 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:bbb00900]
D BIF_01179 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D BIF_00605 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D BIF_00524 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D BIF_01675 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D BIF_01834 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D BIF_00608 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D BIF_00898 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D BIF_01405 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D BIF_00373 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D BIF_00963 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:bbb00523]
D BIF_01544 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BIF_01541 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BIF_01543 sugar nucleotide-binding protein K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D BIF_01121 chorismate mutase K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21]
C 01055 Biosynthesis of vancomycin group antibiotics
D BIF_01541 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:bbb00946]
D BIF_01607 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BIF_01664 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BIF_02125 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:bbb00332]
D BIF_01459 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D BIF_00883 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:bbb00261]
D BIF_02134 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BIF_01496 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BIF_00297 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D BIF_00298 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:bbb00521]
D BIF_01321 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BIF_00908 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D BIF_01342 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D BIF_01544 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BIF_01541 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BIF_01543 sugar nucleotide-binding protein K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:bbb00525]
D BIF_01544 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BIF_01541 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:bbb00401]
D BIF_00146 prephenate dehydrogenase/arogenate dehydrogenase family protein K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D BIF_01460 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BIF_01444 pyridoxal phosphate-dependent aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BIF_00143 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D BIF_00560 chorismate-binding protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites [PATH:bbb00999]
D BIF_01203 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D BIF_01607 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BIF_01664 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D BIF_02125 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D BIF_02205 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D BIF_00416 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:bbb00625]
D BIF_02099 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D BIF_00911 HAD family phosphatase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D BIF_01001 HAD family phosphatase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D BIF_01958 HAD hydrolase-like protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation
D BIF_00911 HAD family phosphatase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D BIF_01001 HAD family phosphatase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D BIF_01958 HAD hydrolase-like protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:bbb00626]
D BIF_02099 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:bbb03020]
D BIF_01034 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BIF_00211 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BIF_01155 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BIF_01204 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:bbb03010]
D BIF_02745 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D BIF_01742 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D BIF_00371 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D BIF_02255 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D BIF_00903 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D BIF_01054 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D BIF_00032 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D BIF_00215 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D BIF_00273 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D BIF_00967 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D BIF_01156 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D BIF_02242 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D BIF_01157 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D BIF_00214 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D BIF_00418 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D BIF_01527 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D BIF_00076 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D BIF_01052 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D BIF_01966 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D BIF_01828 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D BIF_01464 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D BIF_00670 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D BIF_00968 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D BIF_00668 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D BIF_00213 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D BIF_00134 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D BIF_01236 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D BIF_01051 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D BIF_01235 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D BIF_02450 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D BIF_00272 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D BIF_02225 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D BIF_00902 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D BIF_00370 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D BIF_01154 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D BIF_00135 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D BIF_01142 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D BIF_00765 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D BIF_00413 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D BIF_01965 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D BIF_00669 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D BIF_01964 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D BIF_00020 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D BIF_01950 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D BIF_01946 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D BIF_00369 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D BIF_01963 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D BIF_00831 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BIF_02560 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BIF_01883 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D BIF_00677 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D BIF_01906 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D BIF_01848 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D BIF_01961 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D BIF_16SrRNA03 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_16SrRNA12 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_16SrRNA06 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_16SrRNA09 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_23SrRNA02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_23SrRNA05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_23SrRNA08 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_23SrRNA11 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_5SrRNA01 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BIF_5SrRNA04 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BIF_5SrRNA07 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BIF_5SrRNA10 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:bbb00970]
D BIF_02645 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BIF_02650 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BIF_02965 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BIF_02270 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BIF_02910 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BIF_02775 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BIF_02780 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BIF_02875 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BIF_02585 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BIF_02655 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D BIF_02660 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D BIF_02540 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BIF_02545 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BIF_02690 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D BIF_02640 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BIF_02385 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BIF_02380 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BIF_02525 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BIF_02455 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BIF_02320 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BIF_02675 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BIF_02695 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BIF_02855 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BIF_02590 tRNA-His K14226 tRNA-His; tRNA His
D BIF_02275 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BIF_02755 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BIF_02420 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BIF_02315 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BIF_02705 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BIF_02740 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BIF_02940 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BIF_02365 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BIF_02490 tRNA-Met K14230 tRNA-Met; tRNA Met
D BIF_02555 tRNA-Ile K14230 tRNA-Met; tRNA Met
D BIF_02915 tRNA-Met K14230 tRNA-Met; tRNA Met
D BIF_02550 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D BIF_02735 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BIF_02510 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BIF_02670 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BIF_02495 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BIF_02950 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BIF_02500 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BIF_02505 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BIF_02485 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BIF_02985 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BIF_02425 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BIF_02445 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D BIF_02480 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D BIF_02685 tRNA-Val K14237 tRNA-Val; tRNA Val
D BIF_02850 tRNA-Val K14237 tRNA-Val; tRNA Val
D BIF_02845 tRNA-Val K14237 tRNA-Val; tRNA Val
D BIF_02680 tRNA-Val K14237 tRNA-Val; tRNA Val
D BIF_01514 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BIF_00447 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D BIF_00924 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D BIF_02930 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D BIF_00673 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BIF_02065 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BIF_01125 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BIF_00522 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BIF_01323 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BIF_00811 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BIF_02960 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BIF_01284 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D BIF_00854 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BIF_00793 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BIF_01997 ileS; mupirocin-resistant isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BIF_01044 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BIF_01486 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BIF_00473 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BIF_00016 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BIF_00187 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BIF_00495 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BIF_00553 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BIF_01081 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:bbb03060]
D BIF_00901 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D BIF_01461 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D BIF_01902 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D BIF_01832 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BIF_01208 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BIF_00806 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BIF_00707 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BIF_01431 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BIF_01141 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BIF_00335 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system
C 03050 Proteasome
D BIF_01286 arc; proteasome ATPase K13527 mpa; proteasome-associated ATPase
C 03018 RNA degradation [PATH:bbb03018]
D BIF_00201 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D BIF_01197 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BIF_00099 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D BIF_01869 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BIF_00700 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D BIF_01983 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D BIF_01614 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D BIF_00400 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BIF_01426 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D BIF_01673 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:bbb03030]
D BIF_02011 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BIF_00801 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BIF_01500 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BIF_00203 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BIF_00697 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BIF_01452 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BIF_01436 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D BIF_00286 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D BIF_00472 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_01053 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_01325 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D BIF_02105 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D BIF_00179 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:bbb03410]
D BIF_01112 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D BIF_01164 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D BIF_00775 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D BIF_01328 endonuclease/exonuclease/phosphatase family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D BIF_00179 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:bbb03420]
D BIF_01169 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D BIF_00976 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D BIF_01691 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D BIF_00301 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D BIF_00475 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D BIF_02176 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BIF_00621 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BIF_00428 exodeoxyribonuclease V subunit gamma K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BIF_00179 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:bbb03430]
D BIF_02176 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BIF_00621 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BIF_00428 exodeoxyribonuclease V subunit gamma K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BIF_00285 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D BIF_01935 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D BIF_00472 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_01053 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_00801 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BIF_01452 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BIF_01500 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BIF_00697 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BIF_00203 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BIF_02011 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BIF_00179 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:bbb03440]
D BIF_00472 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_01053 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_01454 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D BIF_00372 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D BIF_01499 recR; recombination protein RecR K06187 recR; recombination protein RecR
D BIF_00053 recA; recombinase RecA K03553 recA; recombination protein RecA
D BIF_00563 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D BIF_00229 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D BIF_00562 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D BIF_00398 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BIF_01689 winged helix-turn-helix transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BIF_00801 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BIF_01452 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BIF_01500 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BIF_00697 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BIF_00203 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BIF_02011 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BIF_01283 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:bbb03250]
D BIF_01746 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:bbb02010]
D BIF_02068 NrtA/SsuA/CpmA family ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D BIF_00922 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D BIF_00066 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D BIF_01681 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D BIF_01620 extracellular solute-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D BIF_01619 sugar ABC transporter permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D BIF_01618 sugar ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D BIF_01592 carbohydrate ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D BIF_00212 extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D BIF_00257 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D BIF_01593 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D BIF_00258 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D BIF_01594 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D BIF_02021 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein
D BIF_01097 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D BIF_01096 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D BIF_00309 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D BIF_00142 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D BIF_00778 glutamate ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D BIF_00650 transporter substrate-binding domain-containing protein K10005 gluB; glutamate transport system substrate-binding protein
D BIF_00777 ABC transporter permease subunit K10006 gluC; glutamate transport system permease protein
D BIF_00776 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein
D BIF_00779 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D BIF_01357 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D BIF_01216 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D BIF_01442 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D BIF_01219 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D BIF_02330 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D BIF_01217 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D BIF_01222 metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D BIF_01747 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D BIF_00728 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D BIF_00052 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D BIF_01221 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D BIF_00083 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D BIF_01105 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D BIF_00737 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D BIF_02805 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D BIF_00040 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D BIF_02143 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D BIF_02350 ZinT/AdcA family metal-binding protein K09815 znuA; zinc transport system substrate-binding protein
D BIF_01200 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D BIF_00555 ATP-binding cassette domain-containing protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D BIF_01134 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D BIF_01879 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D BIF_00824 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D BIF_00823 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BIF_02195 ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_00887 ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_01533 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_01274 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_00037 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_00689 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_02024 ATP-binding cassette domain-containing protein K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:bbb03070]
D BIF_01461 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D BIF_01902 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D BIF_00901 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D BIF_01832 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BIF_01208 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BIF_00806 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BIF_01431 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BIF_00707 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:bbb02020]
D BIF_01099 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BIF_01401 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BIF_01098 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3
D BIF_01097 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D BIF_00686 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D BIF_00360 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BIF_00316 response regulator transcription factor K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D BIF_00156 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR
D BIF_00340 tadA; Flp pilus assembly complex ATPase component TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D BIF_00599 pilus assembly protein K12510 tadB; tight adherence protein B
D BIF_01434 nucleotidyltransferase domain-containing protein K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D BIF_01433 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D BIF_02012 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_00348 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_00395 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BIF_01241 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D BIF_01478 low molecular weight phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:bbb02024]
D BIF_01888 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D BIF_00560 chorismate-binding protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D BIF_01520 glycosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D BIF_01875 glycosyltransferase family 2 protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D BIF_01903 glycosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D BIF_01874 glycosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D BIF_02096 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BIF_02097 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BIF_00164 amino acid permease K20265 gadC; glutamate:GABA antiporter
D BIF_01357 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D BIF_01216 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D BIF_01442 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D BIF_01219 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D BIF_02330 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D BIF_01217 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D BIF_01159 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00385 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00380 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00162 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00395 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BIF_00941 cellulase family glycosylhydrolase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D BIF_01105 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D BIF_00737 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D BIF_02805 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D BIF_00040 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D BIF_02143 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D BIF_02118 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D BIF_00853 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D BIF_01415 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D BIF_01149 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D BIF_01416 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D BIF_01148 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D BIF_00293 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D BIF_01417 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D BIF_01418 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D BIF_01208 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BIF_01461 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D BIF_01902 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D BIF_00901 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D BIF_01832 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BIF_00806 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BIF_01431 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BIF_00707 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D BIF_01031 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D BIF_01197 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:bbb01501]
D BIF_00491 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D BIF_01105 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D BIF_00737 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D BIF_02805 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D BIF_00040 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D BIF_02143 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D BIF_00315 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:bbb01502]
D BIF_01368 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BIF_02122 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D BIF_00378 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D BIF_00379 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BIF_02825 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance
D BIF_01746 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:bbb01000]
C 01001 Protein kinases [BR:bbb01001]
D BIF_01407 PASTA domain-containing protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BIF_01568 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BIF_01569 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BIF_00451 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BIF_01476 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D BIF_01099 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BIF_01401 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BIF_00936 HAMP domain-containing histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D BIF_00170 histidine kinase N-terminal domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:bbb01009]
D BIF_01058 serine/threonine-protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D BIF_02600 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:bbb01002]
D BIF_00335 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D BIF_02254 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D BIF_00088 C1 family peptidase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D BIF_00833 C1 family peptidase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D BIF_00158 pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D BIF_00705 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BIF_00954 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase
D BIF_00825 CHAP domain-containing protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D BIF_01914 C40 family peptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D BIF_00558 cell division protein K21473 ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]
D BIF_01091 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D BIF_00554 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D BIF_00755 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D BIF_00207 choloylglycine hydrolase family protein K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D BIF_00667 class C sortase K07284 srtA; sortase A [EC:3.4.22.70]
D BIF_01042 class C sortase K07284 srtA; sortase A [EC:3.4.22.70]
D BIF_01566 class E sortase K07284 srtA; sortase A [EC:3.4.22.70]
D BIF_01294 C69 family dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D BIF_01092 C69 family dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D BIF_01093 C69 family dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D BIF_01450 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D BIF_00521 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D BIF_00205 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D BIF_02435 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D BIF_02570 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D BIF_00643 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D BIF_01924 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D BIF_01589 htpX; zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D BIF_00686 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D BIF_01502 prolyl oligopeptidase family serine peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D BIF_00168 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D BIF_01386 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D BIF_00225 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D BIF_00224 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D BIF_01255 Lon protease K07177 K07177; Lon-like protease
D BIF_00542 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BIF_01141 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BIF_02770 Type 1 glutamine amidotransferase-like domain-containing protein K05995 pepE; dipeptidase E [EC:3.4.13.21]
D BIF_00913 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:bbb01003]
D BIF_02890 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D BIF_00930 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D BIF_01831 glycosyltransferase family 4 protein K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D BIF_00971 glycosyltransferase family 4 protein K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D BIF_01383 glycosyltransferase K19003 mgdA; 1,2-diacylglycerol 3-beta-glucosyltransferase [EC:2.4.1.336]
D BIF_00645 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D BIF_00770 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D BIF_01491 glycosyltransferase K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
D BIF_01252 glycosyltransferase K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:bbb01005]
D BIF_01520 glycosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D BIF_01875 glycosyltransferase family 2 protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D BIF_01903 glycosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D BIF_01874 glycosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D BIF_00770 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:bbb01011]
D BIF_02395 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D BIF_00678 FAD-binding protein K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D BIF_00646 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D BIF_00509 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D BIF_01077 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BIF_01368 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BIF_00564 aminoacyltransferase K12554 murN; alanine adding enzyme [EC:2.3.2.-]
D BIF_02122 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D BIF_00547 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D BIF_00379 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BIF_02825 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D BIF_01744 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BIF_02213 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BIF_01669 hypothetical protein K03980 murJ; putative peptidoglycan lipid II flippase
D BIF_00315 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BIF_01570 penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D BIF_01386 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D BIF_00825 CHAP domain-containing protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D BIF_01914 C40 family peptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D BIF_00558 cell division protein K21473 ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]
D BIF_00667 class C sortase K07284 srtA; sortase A [EC:3.4.22.70]
D BIF_01042 class C sortase K07284 srtA; sortase A [EC:3.4.22.70]
D BIF_01566 class E sortase K07284 srtA; sortase A [EC:3.4.22.70]
D BIF_00634 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:bbb01004]
D BIF_00783 type I polyketide synthase K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D BIF_00412 thioesterase family protein K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D BIF_01159 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00385 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00380 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00162 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_02264 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:bbb01006]
D BIF_01405 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D BIF_00373 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D BIF_01017 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D BIF_02515 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
C 01007 Amino acid related enzymes [BR:bbb01007]
D BIF_01514 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BIF_00826 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D BIF_00553 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BIF_01081 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D BIF_00811 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BIF_01486 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BIF_02960 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BIF_01997 ileS; mupirocin-resistant isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BIF_00854 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BIF_00793 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BIF_01044 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BIF_02065 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BIF_00016 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BIF_01125 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BIF_01323 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BIF_00473 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BIF_00522 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BIF_00673 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BIF_00187 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BIF_00495 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BIF_01460 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BIF_01444 pyridoxal phosphate-dependent aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BIF_02076 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BIF_00727 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117]
D BIF_00086 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K10907 K10907; aminotransferase [EC:2.6.1.-]
D BIF_00143 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BIF_00320 pyridoxal phosphate-dependent aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BIF_00916 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BIF_00862 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D BIF_01826 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BIF_01399 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:bbb00194]
D BIF_01897 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D BIF_00327 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D BIF_00544 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D BIF_01340 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D BIF_01339 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D BIF_01338 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D BIF_01896 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D BIF_01337 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:bbb03000]
D BIF_01698 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BIF_00490 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BIF_00912 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BIF_00432 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BIF_00680 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BIF_01547 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BIF_01615 LacI family DNA-binding transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BIF_01423 LacI family DNA-binding transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D BIF_01650 LacI family DNA-binding transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D BIF_00197 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BIF_02179 winged helix-turn-helix transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BIF_00256 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D BIF_01610 helix-turn-helix transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D BIF_01182 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BIF_00395 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BIF_01466 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BIF_02258 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D BIF_00741 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BIF_00324 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D BIF_00682 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D BIF_01372 ROK family transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D BIF_00962 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BIF_00231 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BIF_01231 helix-turn-helix domain-containing protein K07733 alpA; prophage regulatory protein
D BIF_02171 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D BIF_01363 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:bbb03021]
D BIF_01155 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BIF_01034 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BIF_00211 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BIF_01204 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D BIF_01031 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D BIF_01078 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D BIF_00442 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D BIF_00453 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D BIF_01462 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D BIF_01191 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D BIF_00700 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:bbb03019]
D BIF_00201 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D BIF_01247 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BIF_01983 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D BIF_00588 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D BIF_01869 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BIF_01197 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BIF_00099 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D BIF_00700 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D BIF_01614 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D BIF_00400 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BIF_01426 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D BIF_01673 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D BIF_00539 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
D BIF_00604 DEAD/DEAH box helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D BIF_01186 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:bbb03011]
D BIF_02745 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D BIF_01742 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D BIF_00371 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D BIF_02255 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D BIF_00903 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D BIF_01054 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D BIF_00032 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D BIF_00215 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D BIF_00273 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D BIF_00967 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D BIF_01156 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D BIF_02242 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D BIF_01157 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D BIF_00214 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D BIF_00418 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D BIF_01527 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D BIF_00076 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D BIF_01052 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D BIF_01966 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D BIF_01828 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D BIF_01464 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D BIF_00670 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D BIF_00968 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D BIF_00668 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D BIF_00213 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D BIF_00134 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D BIF_01051 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D BIF_01235 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D BIF_02450 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D BIF_01236 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D BIF_00272 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D BIF_02225 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D BIF_00902 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D BIF_00370 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D BIF_01154 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D BIF_00135 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D BIF_01142 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D BIF_00765 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D BIF_00413 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D BIF_01965 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D BIF_00669 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D BIF_01964 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D BIF_01950 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D BIF_01946 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D BIF_00369 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D BIF_01963 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D BIF_00831 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BIF_02560 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BIF_01883 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D BIF_00677 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D BIF_01906 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D BIF_01848 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D BIF_01961 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D BIF_00020 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D BIF_5SrRNA01 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BIF_5SrRNA04 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BIF_5SrRNA07 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BIF_5SrRNA10 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BIF_16SrRNA03 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_16SrRNA12 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_16SrRNA06 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_16SrRNA09 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_23SrRNA02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_23SrRNA05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_23SrRNA08 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_23SrRNA11 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:bbb03009]
D BIF_01247 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BIF_00588 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D BIF_00129 era; GTPase Era K03595 era; GTPase
D BIF_02440 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D BIF_00442 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D BIF_00453 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D BIF_01462 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D BIF_01676 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BIF_01185 class I SAM-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D BIF_01531 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BIF_00067 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BIF_00658 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BIF_01362 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BIF_01084 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BIF_00919 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D BIF_01506 methyltransferase domain-containing protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D BIF_01240 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BIF_01005 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BIF_01264 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BIF_01410 23S rRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D BIF_00660 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BIF_00334 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BIF_00245 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D BIF_01529 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D BIF_00201 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D BIF_02094 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D BIF_00627 der; bifunctional cytidylate kinase/GTPase Der K03977 engA; GTPase
D BIF_01184 hflX; GTPase HflX K03665 hflX; GTPase
D BIF_00602 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D BIF_01789 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D BIF_00219 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D BIF_01799 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D BIF_00389 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D BIF_01751 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
D BIF_00038 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D BIF_01248 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:bbb03016]
D BIF_01514 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BIF_00473 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BIF_01997 ileS; mupirocin-resistant isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BIF_00793 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BIF_02960 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BIF_01486 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BIF_01044 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BIF_02065 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BIF_00673 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BIF_01125 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BIF_00522 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BIF_01323 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BIF_00811 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BIF_00854 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BIF_00016 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BIF_00187 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BIF_00495 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BIF_00553 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BIF_01081 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D BIF_00331 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D BIF_01810 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D BIF_00254 tRNA (adenine-N1)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D BIF_01026 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D BIF_01153 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D BIF_00761 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D BIF_00602 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D BIF_01017 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D BIF_01905 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D BIF_01303 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D BIF_00713 HRDC domain-containing protein K03684 rnd; ribonuclease D [EC:3.1.13.5]
D BIF_00826 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D BIF_00421 ybaK; Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D BIF_00953 prolyl-tRNA synthetase associated domain-containing protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D BIF_01481 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D BIF_01018 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D BIF_01530 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D BIF_00774 tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D BIF_00345 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D BIF_01410 23S rRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D BIF_01590 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D BIF_00579 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D BIF_00426 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D BIF_00246 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D BIF_00427 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D BIF_00099 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:bbb03012]
D BIF_00193 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D BIF_00766 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D BIF_02111 elongation factor Ts K02357 tsf; elongation factor Ts
D BIF_01972 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D BIF_00045 fusA; elongation factor G K02355 fusA; elongation factor G
D BIF_02565 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D BIF_01916 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D BIF_00601 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D BIF_02760 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D BIF_01962 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D BIF_01845 efp; elongation factor P K02356 efp; elongation factor P
D BIF_00137 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:bbb03110]
D BIF_01318 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D BIF_00332 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D BIF_00321 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D BIF_01614 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D BIF_00400 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BIF_00236 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D BIF_01612 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D BIF_00675 groES; co-chaperone GroES K04078 groES; chaperonin GroES
D BIF_01924 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D BIF_01337 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D BIF_01746 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D BIF_01289 trxA; thioredoxin K03671 TXN; thioredoxin
D BIF_01172 tetratricopeptide repeat protein K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:bbb04131]
D BIF_00940 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BIF_00415 histidine phosphatase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BIF_01127 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BIF_00125 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system [BR:bbb04121]
D BIF_01343 ubiquitin-like protein Pup K13570 pup; prokaryotic ubiquitin-like protein Pup
C 03051 Proteasome [BR:bbb03051]
D BIF_01286 arc; proteasome ATPase K13527 mpa; proteasome-associated ATPase
D BIF_01344 proteasome accessory factor PafA2 family protein K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D BIF_00519 proteasome accessory factor PafA2 K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
C 03032 DNA replication proteins [BR:bbb03032]
D BIF_01325 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D BIF_01698 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BIF_01345 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D BIF_00360 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BIF_01436 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D BIF_00286 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D BIF_00472 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_01053 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_00801 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BIF_01452 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BIF_00697 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BIF_00203 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BIF_02011 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BIF_01500 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BIF_02105 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D BIF_00179 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D BIF_00866 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BIF_01457 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BIF_01033 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BIF_01456 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BIF_01023 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:bbb03036]
D BIF_01698 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BIF_01247 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BIF_01345 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D BIF_00360 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BIF_01657 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D BIF_00197 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BIF_00823 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BIF_00315 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BIF_00512 DNA translocase FtsK 4TM domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D BIF_01833 hypothetical protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D BIF_01151 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ
D BIF_01048 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D BIF_00824 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D BIF_00177 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BIF_00304 cell division protein SepF K09772 sepF; cell division inhibitor SepF
D BIF_00740 ParA family protein K03496 parA; chromosome partitioning protein
D BIF_01332 ParA family protein K03496 parA; chromosome partitioning protein
D BIF_00741 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BIF_00658 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BIF_00736 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D BIF_01849 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D BIF_00879 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D BIF_00278 whiA; DNA-binding protein WhiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:bbb03400]
D BIF_01584 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BIF_01164 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D BIF_00775 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D BIF_01112 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D BIF_01309 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BIF_02137 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BIF_02700 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BIF_01790 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BIF_01328 endonuclease/exonuclease/phosphatase family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D BIF_00179 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D BIF_00976 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D BIF_01691 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D BIF_00301 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D BIF_00475 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D BIF_02176 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BIF_00621 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BIF_00428 exodeoxyribonuclease V subunit gamma K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BIF_01034 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BIF_00211 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BIF_01155 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BIF_01204 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D BIF_01169 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D BIF_00285 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D BIF_01935 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D BIF_00801 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BIF_01452 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BIF_00697 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BIF_00203 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BIF_02011 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BIF_01500 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BIF_00472 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_01053 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_01536 vsr; DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D BIF_00005 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D BIF_00053 recA; recombinase RecA K03553 recA; recombination protein RecA
D BIF_00563 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D BIF_00229 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D BIF_00562 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D BIF_01283 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D BIF_00209 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D BIF_01454 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D BIF_00398 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BIF_01689 winged helix-turn-helix transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BIF_00372 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D BIF_01499 recR; recombination protein RecR K06187 recR; recombination protein RecR
D BIF_00725 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BIF_01985 CRISPR-associated endonuclease Cas4/Cas1 K15342 cas1; CRISP-associated protein Cas1
D BIF_00866 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BIF_01457 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BIF_01033 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BIF_01456 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BIF_01023 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D BIF_01345 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D BIF_01869 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BIF_00961 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D BIF_01090 type VI secretion protein ImpB K03502 umuC; DNA polymerase V
D BIF_00542 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BIF_00423 regulatory protein RecX K03565 recX; regulatory protein
D BIF_00683 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D BIF_01427 NUDIX hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D BIF_01788 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D BIF_01349 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BIF_01348 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:bbb03029]
D BIF_00193 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D BIF_00766 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D BIF_02111 elongation factor Ts K02357 tsf; elongation factor Ts
D BIF_01972 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D BIF_00045 fusA; elongation factor G K02355 fusA; elongation factor G
D BIF_00129 era; GTPase Era K03595 era; GTPase
D BIF_00553 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BIF_00793 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BIF_02065 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BIF_01125 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BIF_01486 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BIF_00447 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D BIF_00924 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D BIF_02930 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D BIF_00472 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_01053 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BIF_01614 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D BIF_01612 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D BIF_00400 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BIF_00675 groES; co-chaperone GroES K04078 groES; chaperonin GroES
D BIF_00236 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D BIF_00879 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D BIF_01208 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:bbb02000]
D BIF_02195 ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_00887 ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_01533 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_01274 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_00037 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_00689 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BIF_02024 ATP-binding cassette domain-containing protein K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
D BIF_00812 ABC-F family ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein
D BIF_02068 NrtA/SsuA/CpmA family ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D BIF_00922 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D BIF_00066 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D BIF_00743 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D BIF_01681 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D BIF_00469 ABC transporter substrate-binding protein K25086 musE; maltose transport system substrate-binding protein
D BIF_02970 ABC transporter substrate-binding protein K25086 musE; maltose transport system substrate-binding protein
D BIF_00746 sugar ABC transporter permease K25087 musF; maltose transport system permease protein
D BIF_00747 carbohydrate ABC transporter permease K25088 musG; maltose transport system permease protein
D BIF_01620 extracellular solute-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D BIF_01619 sugar ABC transporter permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D BIF_01618 sugar ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D BIF_01592 carbohydrate ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D BIF_00212 extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D BIF_00257 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D BIF_01593 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D BIF_00258 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D BIF_01594 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D BIF_02021 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein
D BIF_01606 fetB; iron export ABC transporter permease subunit FetB K02069 STAR2; UDP-glucose/iron transport system permease protein
D BIF_01969 ATP-binding cassette domain-containing protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein
D BIF_02535 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D BIF_01926 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D BIF_00071 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D BIF_01652 sugar ABC transporter ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D BIF_01097 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D BIF_01096 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D BIF_00309 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D BIF_00142 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D BIF_00778 glutamate ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D BIF_00650 transporter substrate-binding domain-containing protein K10005 gluB; glutamate transport system substrate-binding protein
D BIF_00777 ABC transporter permease subunit K10006 gluC; glutamate transport system permease protein
D BIF_00776 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein
D BIF_00779 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D BIF_01357 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D BIF_01216 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D BIF_01442 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D BIF_01219 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D BIF_02330 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D BIF_01217 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D BIF_01222 metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D BIF_01747 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D BIF_00728 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D BIF_00052 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D BIF_01221 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D BIF_00083 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D BIF_00455 cysteine ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D BIF_00905 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D BIF_01811 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D BIF_00617 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D BIF_00616 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D BIF_00580 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D BIF_00619 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D BIF_01038 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D BIF_01105 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D BIF_00737 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D BIF_02805 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D BIF_00040 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D BIF_02143 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D BIF_02118 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D BIF_00853 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D BIF_01415 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D BIF_01149 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D BIF_01416 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D BIF_01148 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D BIF_00293 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D BIF_01417 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D BIF_01418 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D BIF_00126 ATP-binding cassette domain-containing protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D BIF_02350 ZinT/AdcA family metal-binding protein K09815 znuA; zinc transport system substrate-binding protein
D BIF_01200 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D BIF_00555 ATP-binding cassette domain-containing protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D BIF_01135 MptD family putative ECF transporter S component K16926 htsT; energy-coupling factor transport system substrate-specific component
D BIF_01134 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D BIF_01879 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D BIF_00635 ATP-binding cassette domain-containing protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D BIF_01133 ATP-binding cassette domain-containing protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D BIF_01117 ATP-binding cassette domain-containing protein K24040 ecfTA; energy-coupling factor transport system permease/ATP-binding protein [EC:7.-.-.-]
D BIF_00363 ATP-binding cassette domain-containing protein K24040 ecfTA; energy-coupling factor transport system permease/ATP-binding protein [EC:7.-.-.-]
D BIF_00880 ECF transporter S component K16925 ykoE; energy-coupling factor transport system permease protein
D BIF_00821 ECF transporter S component K16925 ykoE; energy-coupling factor transport system permease protein
D BIF_01212 ECF transporter S component K16925 ykoE; energy-coupling factor transport system permease protein
D BIF_01234 zinc ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D BIF_01087 zinc ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D BIF_01817 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D BIF_01086 ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D BIF_00333 ABC transporter permease K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D BIF_00438 ABC transporter permease K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D BIF_00440 ABC transporter ATP-binding protein K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D BIF_00824 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D BIF_00823 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BIF_01261 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D BIF_01385 transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D BIF_01640 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D BIF_01014 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D BIF_01194 cadmium transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D BIF_01013 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BIF_01262 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BIF_01639 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BIF_00566 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BIF_01384 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BIF_01602 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BIF_00322 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BIF_00153 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D BIF_00002 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BIF_01630 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D BIF_01271 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D BIF_01603 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BIF_00078 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BIF_00152 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BIF_01139 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BIF_01800 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BIF_01629 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BIF_02211 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BIF_00623 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D BIF_00489 MFS transporter K02532 lacY; MFS transporter, OHS family, lactose permease
D BIF_01587 MFS transporter K08156 araJ; MFS transporter, DHA1 family, arabinose polymer utilization protein
D BIF_00468 MFS transporter K08168 tetB; MFS transporter, DHA2 family, metal-tetracycline-proton antiporter
D BIF_01104 MFS transporter K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D BIF_00009 multidrug efflux MFS transporter K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D BIF_01334 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D BIF_00659 aquaporin K06188 aqpZ; aquaporin Z
D BIF_02935 aquaporin family protein K02440 glpF; glycerol uptake facilitator
D BIF_01680 potassium channel family protein K10716 kch; voltage-gated potassium channel
D BIF_01432 ammonium transporter K03320 amt; ammonium transporter, Amt family
D BIF_00731 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D BIF_00732 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D BIF_01553 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D BIF_00651 magnesium transporter CorA family protein K03284 corA; magnesium transporter
D BIF_00754 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter
D BIF_00753 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter
D BIF_01440 CrcB family protein K06199 crcB; fluoride exporter
D BIF_02181 DUF1211 domain-containing protein K24915 TMEM175; TMEM175 potassium channel family protein
D BIF_01656 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BIF_02252 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BIF_00671 tubuliform spidroin K21449 ata; trimeric autotransporter adhesin
D BIF_00311 MFS transporter K16209 lacS; lactose/raffinose/galactose permease
D BIF_00221 amino acid permease K03758 arcD; arginine:ornithine antiporter / lysine permease
D BIF_00164 amino acid permease K20265 gadC; glutamate:GABA antiporter
D BIF_00383 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D BIF_00684 glucose transporter K05340 glcU; glucose uptake protein
D BIF_01060 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D BIF_01482 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D BIF_00920 potassium transporter Trk K03498 trkH; trk/ktr system potassium uptake protein
D BIF_00921 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D BIF_01233 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D BIF_01266 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D BIF_01880 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D BIF_01572 Nramp family divalent metal transporter K03322 mntH; manganese transport protein
D BIF_01669 hypothetical protein K03980 murJ; putative peptidoglycan lipid II flippase
D BIF_02430 AEC family transporter K13936 mdcF; malonate transporter and related proteins
D BIF_02925 AEC family transporter K13936 mdcF; malonate transporter and related proteins
D BIF_01160 permease K24180 mleP; malate permease and related proteins
D BIF_01626 KUP/HAK/KT family potassium transporter K03549 kup; KUP system potassium uptake protein
D BIF_02610 ECF transporter S component K23675 fmnP; riboflavin transporter
D BIF_01048 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D BIF_01475 hypothetical protein K03646 tolA; colicin import membrane protein
D BIF_01476 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D BIF_00041 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D BIF_00870 YesL family protein K25089 musI; membrane protein
C 02044 Secretion system [BR:bbb02044]
D BIF_02254 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D BIF_00340 tadA; Flp pilus assembly complex ATPase component TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D BIF_00599 pilus assembly protein K12510 tadB; tight adherence protein B
D BIF_00305 YggT family protein K02221 yggT; YggT family protein
D BIF_00276 ComEA family DNA-binding protein K02237 comEA; competence protein ComEA
D BIF_00696 ComEC/Rec2 family competence protein K02238 comEC; competence protein ComEC
D BIF_00806 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BIF_01461 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D BIF_01902 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D BIF_00901 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D BIF_00707 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BIF_01431 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D BIF_01832 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BIF_01208 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:bbb02042]
D BIF_01656 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BIF_02252 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BIF_00841 hemolysin III family protein K11068 hlyIII; hemolysin III
D BIF_01753 hemolysin III family protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:bbb02022]
D BIF_01099 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BIF_01401 histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BIF_01098 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3
D BIF_00936 HAMP domain-containing histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D BIF_00892 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D BIF_00316 response regulator transcription factor K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D BIF_00156 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR
D BIF_00170 histidine kinase N-terminal domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D BIF_00124 response regulator K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:bbb02035]
D BIF_02254 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D BIF_00340 tadA; Flp pilus assembly complex ATPase component TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:bbb04812]
D BIF_00177 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BIF_00740 ParA family protein K03496 parA; chromosome partitioning protein
D BIF_01332 ParA family protein K03496 parA; chromosome partitioning protein
D BIF_00741 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:bbb04147]
D BIF_01197 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BIF_00940 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BIF_00277 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D BIF_00125 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BIF_01746 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D BIF_00400 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BIF_01614 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D BIF_02104 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BIF_01502 prolyl oligopeptidase family serine peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D BIF_00769 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BIF_02112 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BIF_01972 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D BIF_01810 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D BIF_00419 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BIF_00382 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BIF_01159 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00385 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00380 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00162 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BIF_00325 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D BIF_01075 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D BIF_00354 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BIF_00681 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BIF_01979 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D BIF_00132 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BIF_02012 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_00348 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BIF_01365 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BIF_00506 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BIF_01803 FAD-dependent oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BIF_00790 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BIF_01901 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D BIF_00415 histidine phosphatase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BIF_01127 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:bbb02048]
D BIF_01985 CRISPR-associated endonuclease Cas4/Cas1 K15342 cas1; CRISP-associated protein Cas1
D BIF_02870 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D BIF_01989 CRISPR-associated protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D BIF_01987 cas7u; type I-U CRISPR-associated protein Cas7 K19131 csb1; CRISPR-associated protein Csb1
D BIF_01988 cas5u6u; type I-U CRISPR-associated protein Cas5/Cas6 K19132 csb2; CRISPR-associated protein Csb2
D BIF_01990 CRISPR-associated protein Csb3 K19133 csb3; CRISPR-associated protein Csb3
D BIF_01698 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BIF_02295 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D BIF_02290 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K07172 mazE; antitoxin MazE
D BIF_01661 type II toxin-antitoxin system YafQ family toxin K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D BIF_02196 type II toxin-antitoxin system RelB/DinJ family antitoxin K07473 dinJ; DNA-damage-inducible protein J
D BIF_01585 type II toxin-antitoxin system RelB/DinJ family antitoxin K07473 dinJ; DNA-damage-inducible protein J
D BIF_01887 Fic family protein K07341 doc; death on curing protein
D BIF_00177 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BIF_01514 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:bbb04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:bbb04090]
D BIF_01502 prolyl oligopeptidase family serine peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 01504 Antimicrobial resistance genes [BR:bbb01504]
D BIF_01665 phosphotransferase K00897 aphA; kanamycin kinase [EC:2.7.1.95]
D BIF_00468 MFS transporter K08168 tetB; MFS transporter, DHA2 family, metal-tetracycline-proton antiporter
D BIF_00492 tet(W); tetracycline resistance ribosomal protection protein Tet(W) K18220 tetM; ribosomal protection tetracycline resistance protein
D BIF_00493 TetM/TetW/TetO/TetS family tetracycline resistance ribosomal protection protein K18220 tetM; ribosomal protection tetracycline resistance protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:bbb00537]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:bbb03100]
D BIF_02645 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BIF_02650 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BIF_02965 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BIF_02270 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BIF_02910 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BIF_02775 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BIF_02780 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BIF_02875 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BIF_02585 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BIF_02655 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D BIF_02660 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D BIF_02540 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BIF_02545 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BIF_02690 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D BIF_02640 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BIF_02385 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BIF_02380 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BIF_02525 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BIF_02455 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BIF_02320 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BIF_02675 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BIF_02695 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BIF_02855 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BIF_02590 tRNA-His K14226 tRNA-His; tRNA His
D BIF_02275 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BIF_02755 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BIF_02420 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BIF_02315 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BIF_02705 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BIF_02740 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BIF_02940 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BIF_02365 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BIF_02490 tRNA-Met K14230 tRNA-Met; tRNA Met
D BIF_02555 tRNA-Ile K14230 tRNA-Met; tRNA Met
D BIF_02915 tRNA-Met K14230 tRNA-Met; tRNA Met
D BIF_02550 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D BIF_02735 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BIF_02510 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BIF_02670 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BIF_02495 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BIF_02950 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BIF_02500 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BIF_02505 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BIF_02485 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BIF_02985 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BIF_02425 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BIF_02445 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D BIF_02480 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D BIF_02685 tRNA-Val K14237 tRNA-Val; tRNA Val
D BIF_02850 tRNA-Val K14237 tRNA-Val; tRNA Val
D BIF_02845 tRNA-Val K14237 tRNA-Val; tRNA Val
D BIF_02680 tRNA-Val K14237 tRNA-Val; tRNA Val
D BIF_16SrRNA03 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_16SrRNA12 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_16SrRNA06 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_16SrRNA09 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BIF_23SrRNA02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_23SrRNA05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_23SrRNA08 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_23SrRNA11 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BIF_5SrRNA01 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BIF_5SrRNA04 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BIF_5SrRNA07 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BIF_5SrRNA10 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D BIF_01298 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D BIF_01132 iron-containing alcohol dehydrogenase family protein K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-]
D BIF_01306 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D BIF_00723 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D BIF_02266 dihydrodipicolinate reductase K25950 amdH; secondary-alkyl amine dehydrogenase [NAD(P)+] [EC:1.4.1.28]
D BIF_01403 zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D BIF_01144 msrB; peptide-methionine (R)-S-oxide reductase MsrB K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D BIF_00644 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D BIF_00497 ahpC; peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D BIF_01138 FAD-dependent oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D BIF_01470 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D BIF_00712 pflA; pyruvate formate lyase-activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D BIF_01202 class I SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D BIF_01360 sugar O-acetyltransferase K00633 lacA; galactoside O-acetyltransferase [EC:2.3.1.18]
D BIF_00376 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D BIF_00888 sugar O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D BIF_01280 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D BIF_00377 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D BIF_01176 frc; formyl-CoA transferase K07749 frc; formyl-CoA transferase [EC:2.8.3.16]
D BIF_01171 9-O-acetylesterase K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53]
D BIF_00477 9-O-acetylesterase K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53]
D BIF_01170 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D BIF_00228 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D BIF_01798 histidine phosphatase family protein K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D BIF_00858 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D BIF_01907 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D BIF_01625 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D BIF_00055 nucS; endonuclease NucS K07503 nucS; endonuclease [EC:3.1.-.-]
D BIF_01548 glycoside hydrolase family 127 protein K18205 hypBA1; non-reducing end beta-L-arabinofuranosidase [EC:3.2.1.185]
D BIF_01214 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D BIF_00531 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D BIF_01745 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D BIF_00991 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D BIF_00058 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D BIF_02055 NAD+ synthetase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D BIF_01165 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D BIF_02880 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D BIF_00956 oleate hydratase K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D BIF_00498 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D BIF_01192 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D BIF_02126 AGE family epimerase/isomerase K18479 yihS; sulfoquinovose isomerase [EC:5.3.1.31]
D BIF_00250 cation-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D BIF_00241 HAD-IC family P-type ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D BIF_01785 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
D BIF_02460 nrdI; class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D BIF_00827 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D BIF_01290 G5 domain-containing protein K21688 rpfB; resuscitation-promoting factor RpfB
D BIF_01677 G5 domain-containing protein K21688 rpfB; resuscitation-promoting factor RpfB
C 99987 Cofactor metabolism
D BIF_01270 AarF/ABC1/UbiB kinase family protein K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
D BIF_01535 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
D BIF_01694 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D BIF_01483 esterase K06999 K06999; phospholipase/carboxylesterase
D BIF_00980 esterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D BIF_01928 cold shock domain-containing protein K03704 cspA; cold shock protein
D BIF_00935 cold shock domain-containing protein K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D BIF_00120 trigger factor K03545 tig; trigger factor
D BIF_00906 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D BIF_02465 glutaredoxin family protein K06191 nrdH; glutaredoxin-like protein NrdH
D BIF_00191 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D BIF_01911 AAA family ATPase K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D BIF_00788 YraN family protein K07460 yraN; putative endonuclease
D BIF_02083 DNA-protecting protein DprA K04096 smf; DNA processing protein
D BIF_00505 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D BIF_00230 IS5-like element ISBian1 family transposase K07481 K07481; transposase, IS5 family
D BIF_02023 ISL3-like element IS2001 family transposase K07485 K07485; transposase
D BIF_01559 ISL3-like element IS2001 family transposase K07485 K07485; transposase
D BIF_01938 ISL3-like element IS2001 family transposase K07485 K07485; transposase
D BIF_02030 ISL3-like element IS2001 family transposase K07485 K07485; transposase
D BIF_01821 ISL3-like element IS2001 family transposase K07485 K07485; transposase
D BIF_00760 IS256 family transposase K07493 K07493; putative transposase
C 99979 Viral proteins
C 99998 Others
D BIF_00549 PspA/IM30 family protein K03969 pspA; phage shock protein A
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D BIF_01549 MFS transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D BIF_01601 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D BIF_01605 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D BIF_00933 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D BIF_01145 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D BIF_00074 purine permease K03458 TC.NCS2; nucleobase:cation symporter-2, NCS2 family
C 99978 Cell growth
D BIF_01209 hypothetical protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D BIF_00149 carbon starvation protein A K06200 cstA; carbon starvation protein
D BIF_01335 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D BIF_00666 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D BIF_01809 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D BIF_01632 glycoside hydrolase family 25 protein K07273 acm; lysozyme
D BIF_01633 glycoside hydrolase family 25 protein K07273 acm; lysozyme
C 99994 Others
D BIF_01400 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein
D BIF_00300 TerC family protein K05794 terC; tellurite resistance protein TerC
B
B 09194 Poorly characterized
C 99996 General function prediction only
D BIF_01616 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D BIF_00694 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D BIF_00695 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D BIF_02222 LemA family protein K03744 lemA; LemA protein
D BIF_00927 DedA family protein K03975 dedA; membrane-associated protein
D BIF_01355 YhgE/Pip domain-containing protein K01421 yhgE; putative membrane protein
D BIF_00931 YhgE/Pip domain-containing protein K01421 yhgE; putative membrane protein
D BIF_02095 phage holin family protein K08972 K08972; putative membrane protein
D BIF_01468 DUF1304 domain-containing protein K08987 K08987; putative membrane protein
C 99997 Function unknown
D BIF_00780 alpha/beta fold hydrolase K06889 K06889; uncharacterized protein
D BIF_00122 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D BIF_01581 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D BIF_00771 Bax inhibitor-1/YccA family protein K06890 K06890; uncharacterized protein
D BIF_00552 HD domain-containing protein K06950 K06950; uncharacterized protein
D BIF_01628 HD domain-containing protein K06950 K06950; uncharacterized protein
D BIF_01528 RNA-binding protein K06960 K06960; uncharacterized protein
D BIF_00279 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D BIF_00414 pyridoxamine 5'-phosphate oxidase family protein K07006 K07006; uncharacterized protein
D BIF_01749 SDR family NAD(P)-dependent oxidoreductase K07124 K07124; uncharacterized protein
D BIF_01354 ATP-binding protein K07133 K07133; uncharacterized protein
D BIF_02050 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D BIF_01825 DUF501 domain-containing protein K09009 K09009; uncharacterized protein
D BIF_00729 UPF0182 family protein K09118 K09118; uncharacterized protein
D BIF_00665 PFL family protein K09157 K09157; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 31, 2024