+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Besnoitia besnoiti

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs D BESB_072890 fibrillarin K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-] D BESB_005720 putative nucleolar protein K14564 NOP56; nucleolar protein 56 D BESB_056070 putative nucleolar protein 5 K14565 NOP58; nucleolar protein 58 D BESB_036660 Prp31-15.5k-U4 Snrna Complex family protein K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13 C Box H/ACA snoRNPs D BESB_035790 rRNA pseudouridine synthase K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D BESB_038010 Gar1 protein RNA binding region protein K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1 D BESB_074530 putative 60S ribosomal protein L7a K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2 D BESB_027830 putative structural component of H/ACA snoRNP K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 B 90S particles C U3 small nucleolar RNA-associated proteins D BESB_023570 putative 40S ribosomal protein S4 K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 D BESB_071880 brix domain containing protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 D BESB_084390 hypothetical protein K14545 RRP7; ribosomal RNA-processing protein 7 D BESB_026660 putative periodic tryptophan protein PWP2 K14558 PWP2; periodic tryptophan protein 2 D BESB_051900 BING4CT domain-containing protein K14768 UTP7; U3 small nucleolar RNA-associated protein 7 D BESB_009160 WD domain, G-beta repeat-containing protein K14556 DIP2; U3 small nucleolar RNA-associated protein 12 D BESB_082420 WD domain, G-beta repeat-containing protein K14549 UTP15; U3 small nucleolar RNA-associated protein 15 D BESB_054450 WD-40 repeat protein K14553 UTP18; U3 small nucleolar RNA-associated protein 18 D BESB_044190 CBF/Mak21 family protein K14771 NOC4; U3 small nucleolar RNA-associated protein 19 D BESB_052910 WD domain, G-beta repeat-containing protein K14554 UTP21; U3 small nucleolar RNA-associated protein 21 D BESB_043940 putative rRNA-processing protein FCF1 K14566 UTP24; U3 small nucleolar RNA-associated protein 24 D BESB_075480 uncharacterized protein K14775 UTP30; ribosome biogenesis protein UTP30 C Helicases D BESB_014640 DEAD/DEAH box helicase domain-containing protein K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7] D BESB_074000 DEAD/DEAH box ATP-dependent RNA helicase K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7] D BESB_026350 DEAD/DEAH box helicase domain-containing protein K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7] D BESB_085620 DEAD/DEAH box helicase family protein K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7] D BESB_030640 DEAD/DEAH box helicase domain-containing protein K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7] D BESB_008260 ATP-dependent RNA helicase K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6] D BESB_026420 helicase associated domain (ha2) protein K14780 DHX37; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6] D BESB_077670 putative eukaryotic translation initiation factor 4A, isoform 3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] C GTPase D BESB_074800 AARP2CN (NUC121) domain-containing protein K14569 BMS1; ribosome biogenesis protein BMS1 C RNase D BESB_023700 suppressor of mitotic defects protein K18327 REXO4; RNA exonuclease 4 [EC:3.1.-.-] D BESB_081520 Ser/Thr phosphatase family protein K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-] C Kinase D BESB_001190 CMGC kinase, CK2 family K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] D BESB_032840 casein kinase ii regulatory subunit protein K03115 CSNK2B; casein kinase II subunit beta D BESB_052060 ck2 beta subunit K03115 CSNK2B; casein kinase II subunit beta C Other 90S particles D BESB_074940 putative ribosome biogenesis protein nep1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D BESB_080380 putative pre-rRNA-processing protein K14785 ESF2; ESF2/ABP1 family protein D BESB_001970 putative ribosomal rna assembly protein mis3 K06961 KRR1; ribosomal RNA assembly protein D BESB_039470 ATPase (DUF699) protein K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-] D BESB_026960 putative embryo sac development arrest EDA7 K14788 NOL10; ribosome biogenesis protein ENP2 D BESB_079360 RNA recognition motif-containing protein K14789 NOP6; nucleolar protein 6 D BESB_020480 WD domain, G-beta repeat-containing protein K14791 PWP1; periodic tryptophan protein 1 D BESB_009150 18S rRNA biogenesis protein RCL1 protein K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein D BESB_013690 WD domain, G-beta repeat-containing protein K14793 RRP9; ribosomal RNA-processing protein 9 D BESB_008320 Sof1 family domain-containing protein K11806 DCAF13; DDB1- and CUL4-associated factor 13 B Pre-40S particles C Kinases D BESB_059450 RIO1 family protein K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] C Export and cytoplasmic maturation factors D BESB_005210 putative ribosomal RNA dimethyltransferase K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] D BESB_085140 methyltransferase K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309] D BESB_081530 bystin protein K14797 ENP1; essential nuclear protein 1 D BESB_039430 Nin one binding (NOB1) Zn-ribbon family protein K11883 NOB1; RNA-binding protein NOB1 D BESB_047580 putative pre-rRNA-processing protein PNO1 K11884 PNO1; RNA-binding protein PNO1 D BESB_005100 GTP-binding nuclear protein ran/tc4 K07936 RAN; GTP-binding nuclear protein Ran D BESB_008330 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor isoform 2 family protein K18532 AK6; adenylate kinase [EC:2.7.4.3] D BESB_048410 putative ribosome biogenesis protein K14799 TSR1; pre-rRNA-processing protein TSR1 D BESB_036150 hypothetical protein K14800 TSR2; pre-rRNA-processing protein TSR2 D BESB_017680 programmed cell death protein 2, c-terminal domain-containing protein K14801 TSR4; pre-rRNA-processing protein TSR4 D BESB_025870 programmed cell death protein 2, c-terminal domain-containing protein K14801 TSR4; pre-rRNA-processing protein TSR4 D BESB_004110 putative exportin 1 K14290 XPO1; exportin-1 D BESB_026390 HEAT repeat-containing protein K14293 KPNB1; importin subunit beta-1 D BESB_068970 HEAT repeat-containing protein K18752 TNPO1; transportin-1 D BESB_009820 HEAT repeat-containing protein K20221 IPO4; importin-4 D BESB_025680 HEAT repeat-containing protein K20222 IPO5; importin-5 D BESB_083470 HEAT repeat-containing protein K20222 IPO5; importin-5 D BESB_055420 importin-beta N-terminal domain-containing protein K20223 IPO7; importin-7 C Other pre-40S particles D BESB_068170 putative ATP-binding cassette sub-family E member 1 K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 B Pre-60S particles C Helicases D BESB_036610 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7] D BESB_074240 putative ethylene-responsive RNA helicase K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7] D BESB_074000 DEAD/DEAH box ATP-dependent RNA helicase K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7] D BESB_070420 DEAD/DEAH box helicase domain-containing protein K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7] D BESB_079900 DEAD/DEAH box helicase domain-containing protein K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7] D BESB_053630 DEAD/DEAH box helicase domain-containing protein K14805 DDX24; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7] D BESB_039880 DEAD/DEAH box RNA helicase family protein K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7] D BESB_022960 DEAD/DEAH box helicase domain-containing protein K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7] D BESB_056090 DEAD/DEAH box helicase domain-containing protein K14809 DDX55; ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7] D BESB_002830 DEAD/DEAH box helicase domain-containing protein K14810 DDX56; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7] D BESB_066920 putative Superkiller viralicidic activity 2 family 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] C GTPases D BESB_065740 GNL3L/Grn1 GTPase K14538 NUG1; nuclear GTP-binding protein D BESB_017830 putative nucleolar gtp-binding protein 2 K14537 NUG2; nuclear GTP-binding protein D BESB_002370 putative nucleolar GTP-binding protein 1 K06943 NOG1; nucleolar GTP-binding protein D BESB_022920 hypothetical protein K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-] C RNases D BESB_071570 small nuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D BESB_017870 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] D RNase MRP E BESB_013330 hypothetical protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] C Kinases C Export and cytoplasmic maturation factors D BESB_044610 putative eukaryotic initiation factor-6 K03264 EIF6; translation initiation factor 6 D BESB_007480 heat shock protein HSP70 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D BESB_083780 mRNA turnover 4 (MRT4) family protein K14815 MRT4; mRNA turnover protein 4 D BESB_069070 NMD3 family protein K07562 NMD3; 60S ribosomal export protein NMD3 D BESB_005100 GTP-binding nuclear protein ran/tc4 K07936 RAN; GTP-binding nuclear protein Ran D BESB_081890 hypothetical protein K14816 REI1; pre-60S factor REI1 D BESB_037270 ATPase, AAA family protein K14575 AFG2; AAA family ATPase D BESB_004110 putative exportin 1 K14290 XPO1; exportin-1 D BESB_026390 HEAT repeat-containing protein K14293 KPNB1; importin subunit beta-1 D BESB_068970 HEAT repeat-containing protein K18752 TNPO1; transportin-1 D BESB_009820 HEAT repeat-containing protein K20221 IPO4; importin-4 D BESB_025680 HEAT repeat-containing protein K20222 IPO5; importin-5 D BESB_083470 HEAT repeat-containing protein K20222 IPO5; importin-5 D BESB_055420 importin-beta N-terminal domain-containing protein K20223 IPO7; importin-7 D BESB_071000 dual specificity protein phosphatase K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48] C 5-FMC complex C Ribosome quality control proteins D BESB_019960 hypothetical protein K24970 TCF25; transcription factor 25 D BESB_024220 cell division protein CDC48AP K13525 VCP; transitional endoplasmic reticulum ATPase D BESB_038290 cell division protein CDC48CY K13525 VCP; transitional endoplasmic reticulum ATPase D BESB_037640 NPL4 family protein K14015 NPLOC4; nuclear protein localization protein 4 D BESB_053560 ubiquitin fusion degradation protein UFD1CY K14016 UFD1; ubiquitin fusion degradation protein 1 C Other pre-60S particles D BESB_080040 brix domain-containing protein K14820 BRX1; ribosome biogenesis protein BRX1 D BESB_060390 putative bud site selection protein K14821 BUD20; bud site selection protein 20 D BESB_045540 WD domain, G-beta repeat-containing protein K14830 MAK11; protein MAK11 D BESB_003670 Mak16 protein K14831 MAK16; protein MAK16 D BESB_037480 putative 60S ribosome subunit biogenesis protein NIP7 K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 D BESB_021370 NOL1/NOP2/sun family protein K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] D BESB_034580 RNA recognition motif-containing protein K14838 NOP15; nucleolar protein 15 D BESB_046340 putative ribosome biogenesis protein NSA2 K14842 NSA2; ribosome biogenesis protein NSA2 D BESB_020480 WD domain, G-beta repeat-containing protein K14791 PWP1; periodic tryptophan protein 1 D BESB_045530 histone lysine demethylase JmjC NO66 K16914 RIOX1; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69] D BESB_010460 cell division protein CDC48 K14571 RIX7; ribosome biogenesis ATPase D BESB_028930 putative IMP4 family U3 small nucleolar ribonucleoprotein (snoRNP) K14846 RPF1; ribosome production factor 1 D BESB_009060 brix domain-containing protein K14847 RPF2; ribosome production factor 2 D BESB_073160 WD domain, G-beta repeat-containing protein K14848 RRB1; ribosome assembly protein RRB1 D BESB_069000 methyltransferase domain-containing protein K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287] D BESB_043440 ribosome biogenesis regulatory protein (rrs1) protein K14852 RRS1; regulator of ribosome biosynthesis D BESB_034080 putative notchless K14855 RSA4; ribosome assembly protein 4 D BESB_025880 uncharacterized protein K14856 SDA1; protein SDA1 D BESB_022660 ribosomal RNA large subunit methyltransferase J protein K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] D BESB_007580 brix domain-containing protein K14859 SSF1_2; ribosome biogenesis protein SSF1/2 D BESB_071360 NLE (NUC135) domain-containing protein K14863 WDR12; ribosome biogenesis protein B Other ribosome biogenesis factors C BESB_058450 hypothetical protein K15262 BCP1; protein BCP1 C BESB_052940 R3H domain-containing protein K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3] C BESB_067440 GTPase K03595 era; GTPase C BESB_085720 putative proliferation-associated protein 2G4 K26736 PA2G4; ERBB-3 binding protein C BESB_072220 small ribosomal subunit Rsm22 protein K27906 METTL17; ribosome assembly protein METTL17/RSM22, mitochondrial C BESB_040090 putative GTP binding protein 7 isoform 2 family protein K19828 MTG1; mitochondrial GTPase 1 # AProkaryotic type B Sno RNPs C Box C/D snoRNPs D BESB_005720 putative nucleolar protein K14564 NOP56; nucleolar protein 56 D BESB_002330 ribosomal protein RPL7A K02936 RP-L7Ae; large subunit ribosomal protein L7Ae C Box H/ACA snoRNPs D BESB_035790 rRNA pseudouridine synthase K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D BESB_027830 putative structural component of H/ACA snoRNP K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 B rRNA transcription factors B rRNA modification factors C 16S rRNA modification factors C 23S rRNA modification factors D BESB_080870 ribosomal RNA methyltransferase (FtsJ) family protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D BESB_055980 hypothetical protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors B rRNA processing factors B rRNA helicases B GTPases C BESB_067440 GTPase K03595 era; GTPase B Other maturation factors C BESB_062040 GTP binding protein K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 2, 2025