+E Transcription factors KO
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Transcription Factors - Bordetella bronchiseptica 253
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BN112_3446 AraC-family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D BN112_3521 AraC family regulatory protein K07506 K07506; AraC family transcriptional regulator
D BN112_2225 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D BN112_3640 LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN112_3790 LysR family regulatory protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN112_4276 putative LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN112_2031 probable LysR-familyt ranscriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN112_1566 putative LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN112_2432 phnR; LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN112_2766 LysR-family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN112_1439 metR; transcriptional regulatory protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D BN112_0740 probable LysR-family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BN112_3181 probable LysR-family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D BN112_2338 LysR-family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D BN112_4684 putative LysR-family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D BN112_2694 LysR-family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D BN112_3884 LysR family regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D BN112_3740 LysR family regulatory protein K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D BN112_1009 probable LysR-family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D BN112_2723 putative LysR-family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D BN112_0264 probable LysR-family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D BN112_2975 LysR family regulatory protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BN112_2250 probable LysR-family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BN112_3063 LysR family regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D BN112_3547 putative LysR-family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D BN112_2420 LysR-family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D BN112_2821 LysR family regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D BN112_3878 LysR family regulatory protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D BN112_3086 cyaX; probable LysR-family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D BN112_3858 putative LysR-family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D BN112_4238 putative transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D BN112_1617 putative transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
C DeoR family
D BN112_0861 glpR; glycerol-3-phosphate regulon repressor protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D BN112_2873 LacI family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN112_3855 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN112_0191 putative LacI-family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D BN112_2316 putative GntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN112_0280 putative GntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN112_4733 putative GntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN112_4319 putative GntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN112_4365 putative transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN112_4086 probable GntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN112_4104 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN112_4107 GntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN112_3060 GntR family regulatory protein K03710 K03710; GntR family transcriptional regulator
D BN112_0519 Putative transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN112_0198 probable GntR-family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN112_1520 GntR family regulatory protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN112_4251 putative GntR-family transcriptional regulatory protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN112_3738 GntR-family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN112_3115 putative GntR-family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN112_2585 putative GntR-family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN112_3316 glcC; GntR-family transcriptional regulator K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D BN112_1707 probable GntR-family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BN112_0182 putative GntR-family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BN112_1630 putative transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BN112_2728 probable GntR-family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BN112_0253 putative GntR-family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BN112_0535 Putative regulatory protein K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
C TetR/AcrR family
D BN112_3900 putative TetR-family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D BN112_3729 TetR-family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D BN112_2119 putative TetR-family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BN112_2931 putative TetR-family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D BN112_0119 probable TetR-family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D BN112_2812 conserved hypothetical protein K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D BN112_0210 putative TetR-family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D BN112_3457 AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN112_0852 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN112_4203 alsB; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN112_3619 AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN112_4048 putative AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN112_3172 alsB; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN112_1349 putative AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN112_1940 Putative AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN112_2288 putative AsnC-family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D BN112_4232 grp; glutamate uptake regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
C MarR family
D BN112_0882 putative MarR-family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BN112_1729 putative transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D BN112_1744 MarR-family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D BN112_1698 probable MarR-family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BN112_0815 MerR-family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D BN112_4261 putative MerR-family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D BN112_4474 fur; ferric ion uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BN112_3231 putative regulatory protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D BN112_4424 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D BN112_0564 Putative transcriptional regulatory protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D BN112_2710 putative transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D BN112_2471 probable transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D BN112_2905 putative transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D BN112_2998 probable transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN112_1758 probable transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN112_3441 transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN112_4287 probable transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN112_2339 IclR-family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN112_0516 Putative transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN112_2743 probable transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BN112_3847 putative IclR-family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BN112_2750 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BN112_2830 IclR family regulatory protein K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis
C CRP/FNR family
D BN112_2791 probable regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BN112_3183 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BN112_0306 putative transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BN112_1097 btr; transcriptional regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D BN112_0103 putative DNA-binding protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D BN112_0892 putative conserved DNA-binding protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D BN112_2264 arsR; probable ArsR-family transcription regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BN112_0587 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D BN112_3252 birA; putative biotin protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BN112_4403 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D BN112_0928 prpR; propionate catabolism operon regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D BN112_2047 putative DNA-binding protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D BN112_0537 Putative transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D BN112_3109 putative transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D BN112_0961 conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D BN112_4808 putative transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D BN112_0213 putative sigma-54-dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BN112_1156 putative molybdenum-binding protein K02019 modE; molybdate transport system regulatory protein
D BN112_0767 putative DNA-binding protein K07726 K07726; putative transcriptional regulator
D BN112_0557 putative DNA-binding protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D BN112_1492 putA; bifunctional proline oxidoreductase/transcriptional repressor K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D BN112_3389 conserved hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D BN112_4613 BolA-like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D BN112_3407 parB; probable chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BN112_4477 heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D BN112_1240 paaX; phenylacetic acid degradation operon negative regulatory protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D BN112_4279 putative enzyme-regulator fusion protein K06140 rnk; regulator of nucleoside diphosphate kinase
D BN112_1331 phage-related conserved hypothetical protein K07733 alpA; prophage regulatory protein
D BN112_2989 putative regulatory protein K07734 paiB; transcriptional regulator
D BN112_0183 conserved hypothetical protein K07734 paiB; transcriptional regulator
D BN112_4017 putative transcriptional regulator K07735 algH; putative transcriptional regulator
D BN112_3233 dksA; putative dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D BN112_4075 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D BN112_4209 mraZ; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0