+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Bifidobacterium bifidum PRL2010
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D BBPR_0346 rncS; RncS Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D BBPR_0895 orn; Orn Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D BBPR_1388 orn; Orn Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C BBPR_0825 era; Era GTP-binding protein K03595 era; GTPase
C BBPR_0255 obgE; ObgE GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BBPR_1523 nusA; NusA N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C BBPR_1289 nusB; NusB N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C BBPR_0259 nusG; NusG Transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D BBPR_1829 Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BBPR_0536 16S RNA methylase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D BBPR_0325 Methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BBPR_0820 Conserved hypothetical protein with DUF558 domain K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BBPR_1839 gidB; Methyltransferase gidB (Glucose inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BBPR_0548 mraW; MraW S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BBPR_1790 Uroporphyrin-III C/tetrapyrrole K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BBPR_1141 Hemolysin-like protein with S4 and FtsJ-like methyltransferase domains K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D BBPR_1817 RNA/rRNA methyltransferase protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BBPR_0155 Conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BBPR_1062 Radical SAM family enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BBPR_1141 Hemolysin-like protein with S4 and FtsJ-like methyltransferase domains K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D BBPR_0500 Ribosomal large subunit pseudouridine synthase D K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D BBPR_1003 rluB; RluB Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BBPR_0490 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C BBPR_1079 rimI; RimI Ribosomal-protein-S18-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BBPR_0329 rimM; RimM 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
B rRNA processing factors
C BBPR_0346 rncS; RncS Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C BBPR_0251 rne; Rne Ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12]
C BBPR_0802 Endonuclease involved in recombination K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C BBPR_0825 era; Era GTP-binding protein K03595 era; GTPase
C BBPR_1002 GTP-binding protein K03977 engA; GTPase
C BBPR_0255 obgE; ObgE GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-]
C BBPR_0538 hflX; HflX GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C BBPR_1393 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C BBPR_1247 relA; RelA GTP pyrophosphokinase/Guanosine-3',5'-bis(Diphosphate), 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BBPR_1521 rbfA; RbfA Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C BBPR_1124 Iojap protein family K09710 ybeB; ribosome-associated protein
C BBPR_0823 Conserved hypothetical protein in uncharacterized protein family UPF0054 K07042 ybeY; probable rRNA maturation factor
C BBPR_0516 Hypothetical RNA binding protein K07574 yhbY; RNA-binding protein
C BBPR_1196 GTP-binding protein, probable translation factor K06942 ychF; ribosome-binding ATPase
C BBPR_0344 Conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024