+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Bifidobacterium bifidum PRL2010

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D BBPR_0346 rncS; RncS Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D BBPR_0895 orn; Orn Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D BBPR_1388 orn; Orn Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C BBPR_0825 era; Era GTP-binding protein K03595 era; GTPase C BBPR_0255 obgE; ObgE GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C BBPR_1523 nusA; NusA N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA C BBPR_1289 nusB; NusB N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C BBPR_0259 nusG; NusG Transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D BBPR_1829 Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D BBPR_0536 16S RNA methylase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D BBPR_0325 Methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D BBPR_0820 Conserved hypothetical protein with DUF558 domain K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D BBPR_1839 gidB; Methyltransferase gidB (Glucose inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BBPR_0548 mraW; MraW S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D BBPR_1790 Uroporphyrin-III C/tetrapyrrole K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D BBPR_1141 Hemolysin-like protein with S4 and FtsJ-like methyltransferase domains K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D BBPR_1817 RNA/rRNA methyltransferase protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D BBPR_0155 Conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D BBPR_1062 Radical SAM family enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D BBPR_1141 Hemolysin-like protein with S4 and FtsJ-like methyltransferase domains K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D BBPR_0500 Ribosomal large subunit pseudouridine synthase D K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D BBPR_1003 rluB; RluB Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D BBPR_0490 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C BBPR_1079 rimI; RimI Ribosomal-protein-S18-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C BBPR_0329 rimM; RimM 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM B rRNA processing factors C BBPR_0346 rncS; RncS Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C BBPR_0251 rne; Rne Ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12] C BBPR_0802 Endonuclease involved in recombination K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases B GTPases C BBPR_0825 era; Era GTP-binding protein K03595 era; GTPase C BBPR_1002 GTP-binding protein K03977 engA; GTPase C BBPR_0255 obgE; ObgE GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-] C BBPR_0538 hflX; HflX GTP-binding protein K03665 hflX; GTPase B Other maturation factors C BBPR_1393 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C BBPR_1247 relA; RelA GTP pyrophosphokinase/Guanosine-3',5'-bis(Diphosphate), 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C BBPR_1521 rbfA; RbfA Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C BBPR_1124 Iojap protein family K09710 ybeB; ribosome-associated protein C BBPR_0823 Conserved hypothetical protein in uncharacterized protein family UPF0054 K07042 ybeY; probable rRNA maturation factor C BBPR_0516 Hypothetical RNA binding protein K07574 yhbY; RNA-binding protein C BBPR_1196 GTP-binding protein, probable translation factor K06942 ychF; ribosome-binding ATPase C BBPR_0344 Conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024