+D Transcription factors KO #

  Transcription Factors - Bradyrhizobium brasilense CB627

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D QA636_25955 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D QA636_25980 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D QA636_28940 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D QA636_12745 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D QA636_02410 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D QA636_08025 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D QA636_00825 bifunctional helix-turn-helix domain-containing protein/methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D QA636_37365 Ada metal-binding domain-containing protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D QA636_01985 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D QA636_06640 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D QA636_14060 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D QA636_20560 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D QA636_34335 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D QA636_39830 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D QA636_40715 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D QA636_40775 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D QA636_39195 LysR substrate-binding domain-containing protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D QA636_33925 nodD1; transcriptional regulator NodD1 K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator D QA636_33930 nodD2; transcriptional regulator NodD2 K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator D QA636_10365 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D QA636_10720 LysR substrate-binding domain-containing protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D QA636_11275 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D QA636_29150 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D QA636_13205 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D QA636_32970 DeoR/GlpR family DNA-binding transcription regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D QA636_09340 DeoR/GlpR family DNA-binding transcription regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D QA636_08270 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D QA636_11415 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D QA636_26380 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D QA636_32095 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D QA636_32555 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D QA636_28875 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D QA636_11395 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D QA636_05365 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D QA636_24745 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D QA636_25720 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D QA636_26725 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D QA636_30880 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D QA636_09130 GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator D QA636_36400 GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator C TetR/AcrR family D QA636_04370 TetR family transcriptional regulator C-terminal domain-containing protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D QA636_13390 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D QA636_25645 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D QA636_26210 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D QA636_32135 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D QA636_37835 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon C Lrp/AsnC family D QA636_03025 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D QA636_10575 Lrp/AsnC ligand binding domain-containing protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D QA636_11750 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D QA636_31270 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D QA636_34185 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D QA636_35020 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D QA636_35575 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D QA636_03560 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D QA636_07020 LuxR family transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D QA636_25360 LuxR C-terminal-related transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D QA636_15705 autoinducer binding domain-containing protein K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids C MarR family D QA636_05560 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D QA636_11840 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D QA636_31605 MarR family winged helix-turn-helix transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D QA636_00490 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D QA636_25470 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D QA636_17460 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D QA636_00150 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D QA636_42055 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D QA636_00280 transcriptional repressor K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D QA636_28285 IclR family transcriptional regulator C-terminal domain-containing protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D QA636_04310 IclR family transcriptional regulator C-terminal domain-containing protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D QA636_05055 IclR family transcriptional regulator C-terminal domain-containing protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D QA636_30240 IclR family transcriptional regulator C-terminal domain-containing protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D QA636_02585 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D QA636_10540 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D QA636_15140 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D QA636_16205 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D QA636_25830 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D QA636_10990 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D QA636_12105 helix-turn-helix domain-containing protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein D QA636_27985 helix-turn-helix domain-containing protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein D QA636_33465 helix-turn-helix domain-containing protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein C Rrf2 family D QA636_17090 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D QA636_19970 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family D QA636_04315 helix-turn-helix transcriptional regulator K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator D QA636_11755 short-chain fatty acyl-CoA regulator family protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D QA636_09435 short-chain fatty acyl-CoA regulator family protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D QA636_32905 short-chain fatty acyl-CoA regulator family protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D QA636_21555 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D QA636_03890 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D QA636_42370 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D QA636_33865 nifA; nif-specific transcriptional activator NifA K02584 nifA; Nif-specific regulatory protein D QA636_37735 winged helix-turn-helix domain-containing protein K02019 modE; molybdate transport system regulatory protein D QA636_19960 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator D QA636_29390 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family D QA636_00760 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D QA636_10570 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D QA636_36870 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D QA636_41655 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D QA636_01100 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D QA636_04980 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D QA636_33240 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D QA636_41500 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D QA636_16010 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH D QA636_00895 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D QA636_14000 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D QA636_30965 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D QA636_37905 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D QA636_04630 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D QA636_05370 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D QA636_23905 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D QA636_24430 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D QA636_33085 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D QA636_39245 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D QA636_16755 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D QA636_20855 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D QA636_23550 tetratricopeptide repeat protein K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0