+E	Transcription factors	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Factors - Bacillus caldolyticus</h2>
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A<b>Eukaryotic type</b>
B  Basic leucine zipper (bZIP)
C    AP-1(-like) components, Jun
C    AP-1(-like) components, Fos
C    AP-1(-like) components, Maf
C    AP-1(-like) components, NF-E2
C    AP-1(-like) components, Fungal regulators
C    AP-1(-like) components, CRE-BP/ATF
C    CREB
C    C/EBP-like factors
C    bZIP/PAR
C    Plant bZIP factors
C    ZIP only
B  Basic helix-loop-helix (bHLH)
C    Ubiquitous (class A) factors
C    Myogenic transcription factors
C    Achaete-Scute
C    Tal/Twist/Atonal/Hen, Lymphoid factors
C    Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C    Tal/Twist/Atonal/Hen, HEN
C    Tal/Twist/Atonal/Hen, Mesp
C    Tal/Twist/Atonal/Hen, Atonal
C    Tal/Twist/Atonal/Hen, Pancreatic factors
C    Hairy, Hairy/E(SPL)
C    Hairy, Fungal regulators
C    Factors with PAS domain
C    Yabby
C    INO
C    HLH domain only
B  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C    Ubiquitous bHLH-ZIP factors
C    Cell cycle controlling factors, Myc
C    Cell cycle controlling factors, Mad/Max
C    Other bHLH-ZIP factors
B  Other basic domains
C    NF-1
C    RF-X
C    AP-2 (bHSH)
B  Zinc finger
C    Cys4 thyroid hormone receptor-like
C    Cys4 hepatocyte nuclear factor 4-like
C    Cys4 estrogen receptor-like
C    Cys4 nerve growth factor IB-like
C    Cys4 Fushi tarazu-F1-like
C    Cys4 germ cell nuclear factor
C    Cys4 Knirps/DAX1-like
C    Cys4 GATA-factors
C    Cys2His2 SP/KLF family and related proteins
C    Cys2His2 GLI-like
C    Cys2His2 Snail
C    Cys2His2 BTB-ZF factors
C    Cys2His2 BED
C    Cys2His2 PRDM
C    Cys2His2 metabolic regulators in fungi
C    Cys2His2 others
C    Cys2HisCys zinc factors
C    Cys3His zinc factors
C    Cys2CysHis zinc factors
C    CXXC CpG-binding proteins
C    Cys6 metabolic regulators in fungi
C    Other zinc fingers
B  Helix-turn-helix
C    Homeo domain ANTP: HOXL
C    Homeo domain ANTP: NKL
C    Homeo domain Paired-related
C    Homeo domain LIM
C    Homeo domain POU
C    Homeo domain SINE
C    Homeo domain ZF
C    Homeo domain CUT
C    Homeo domain PROS
C    Homeo domain TALE
C    Homeo domain other
C    Fork head/winged helix developmental regulators
C    Fork head/winged helix tissue-specific regulators
C    Fork head/winged helix cell cycle-controlling factors, E2F
C    Fork head/winged helix cell cycle-controlling factors, DP
C    Fork head/winged helix other regulators
C    Heat shock factors
C    Tryptophan clusters Myb, Myb-factors
C    Tryptophan clusters Myb, Myb-like factors
C    Tryptophan clusters Ets-type
C    Tryptophan clusters interferon-regulating factors
C    TEA domain
C    ARID
B  beta-Scaffold factors with minor groove contacts
C    RHR (Rel homology region) Rel/Ankyrin
C    RHR (Rel homology region) Ankyrin only
C    RHR (Rel homology region) NF-AT
C    STAT
C    p53
C    MADS-box regulators of differentiation, MEF-2
C    MADS-box regulators of differentiation, Homeotic genes
C    MADS-box regulators of differentiation, Yeast regulators
C    MADS-box responders to external signals
C    SAND domain-containing proteins
C    TATA-binding proteins
C    HMG SOX
C    HMG TCF-1
C    HMG2-related
C    UBF
C    Other HMG box factors
C    Heteromeric CCAAT factors
C    Grainyhead
C    Cold-shock domain factors, DbpA-like
C    Cold-shock domain factors, YB-1/DbpB-like
C    Cold-shock domain factors, FRG Y2-like
C    Runt
C    MYRF
B  Other transcription factors
C    HMGI(Y)
C    NUPR
E        Line #4
C    Pocket domain Rb
C    Pocket domain CBP
C    T-box
C    DMRT
C    LRRFIP
C    TCP
C    AP2/ERF
C    WRKY
C    LOB
C    Copper-fist proteins fungal regulators
C    Others
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A<b>Prokaryotic type</b>
B  Helix-turn-helix
C    AraC family
C    LysR family
D      CWI35_03075 LysR family transcriptional regulator	K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon 
D      CWI35_12840 LysR family transcriptional regulator	K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD 
D      CWI35_03150 LysR family transcriptional regulator	K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon 
D      CWI35_11880 LysR family transcriptional regulator	K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon 
C    DeoR family
D      CWI35_00975 DeoR/GlpR transcriptional regulator	K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor 
D      CWI35_11400 spoIIID; sporulation transcriptional regulator SpoIIID	K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D 
D      CWI35_15970 transcriptional regulator	K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator 
C    LacI family
D      CWI35_11540 LacI family transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      CWI35_11710 transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      CWI35_14190 ccpA; catabolite control protein A	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      CWI35_17685 LacI family transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      CWI35_00625 LacI family transcriptional regulator	K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor 
D      CWI35_17885 LacI family transcriptional regulator	K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG 
C    GntR family
D      CWI35_01530 treR; trehalose operon repressor	K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor 
D      CWI35_00895 GntR family transcriptional regulator	K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization 
D      CWI35_17040 GntR family transcriptional regulator	K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator 
D      CWI35_03830 GntR family transcriptional regulator	K03710 K03710; GntR family transcriptional regulator 
D      CWI35_00335 FadR family transcriptional regulator	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex 
D      CWI35_14485 FadR family transcriptional regulator	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex 
D      CWI35_08095 FadR family transcriptional regulator	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex 
D      CWI35_06460 GntR family transcriptional regulator	K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase 
D      CWI35_02020 GntR family transcriptional regulator	K07979 ytrA; GntR family transcriptional regulator 
C    TetR/AcrR family
D      CWI35_14775 TetR family transcriptional regulator	K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein 
D      CWI35_02155 TetR/AcrR family transcriptional regulator	K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator 
C    Lrp/AsnC family
D      CWI35_11345 Lrp/AsnC family transcriptional regulator	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
C    LuxR family
D      CWI35_14895 DNA-binding response regulator	K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein 
C    MarR family
D      CWI35_06915 transcriptional regulator Hpr	K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr 
D      CWI35_05345 MarR family transcriptional regulator	K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor 
D      CWI35_02110 MarR family transcriptional regulator	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
D      CWI35_00860 MarR family transcriptional regulator	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
C    MerR family
D      CWI35_03590 MerR family transcriptional regulator	K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor 
D      CWI35_12465 merR; Hg(II)-responsive transcriptional regulator	K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein 
D      CWI35_01515 MerR family transcriptional regulator	K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator 
D      CWI35_00870 MerR family DNA-binding transcriptional regulator	K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator 
C    Fur family
D      CWI35_16835 transcriptional repressor	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      CWI35_16055 transcriptional repressor	K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator 
D      CWI35_07670 transcriptional repressor	K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator 
C    IclR family
D      CWI35_02665 IclR family transcriptional regulator	K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor 
D      CWI35_02460 IclR family transcriptional regulator	K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor 
C    CRP/FNR family
D      CWI35_06305 Crp/Fnr family transcriptional regulator	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
C    Rrf2 family
D      CWI35_01560 transcriptional regulator	K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor 
D      CWI35_15440 Rrf2 family transcriptional regulator	K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor 
C    ArsR family
D      CWI35_07300 ArsR family transcriptional regulator	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor 
D      CWI35_11730 ArsR family transcriptional regulator	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor 
D      CWI35_07315 transcriptional regulator	K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor 
D      CWI35_08345 transcriptional regulator	K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor 
D      CWI35_03160 ArsR family transcriptional regulator	K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor 
D      CWI35_07335 ArsR family transcriptional regulator	K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor 
C    XRE family
C    PadR family
C    Other families
D      CWI35_16335 transcriptional regulator MntR	K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator 
D      CWI35_17530 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] 
D      CWI35_14040 XRE family transcriptional regulator	K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR 
D      CWI35_10290 pur operon repressor	K09685 purR; HTH-type transcriptional regulator, purine operon repressor 
D      CWI35_11490 sigma-54-dependent Fis family transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      CWI35_18010 sigma-54-dependent Fis family transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      CWI35_09455 sigma-54-dependent Fis family transcriptional regulator	K06714 rocR; arginine utilization regulatory protein 
D      CWI35_09065 redox-sensing transcriptional repressor Rex	K01926 rex; redox-sensing transcriptional repressor 
D      CWI35_04185 GTP-sensing pleiotropic transcriptional regulator CodY	K03706 codY; transcriptional pleiotropic repressor 
D      CWI35_09490 transcriptional regulator	K07727 K07727; putative transcriptional regulator 
B  Ribbon-helix-helix
C    CopG family
D      CWI35_09195 antitoxin endoai	K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI 
C    Other families
B  Other transcription factors
C    BglG family
D      CWI35_10830 levansucrase	K26932 sacT; sacPA operon transcriptional antiterminator 
D      CWI35_05155 transcription antiterminator	K03480 glcT; transcriptional antiterminator 
D      CWI35_00570 PTS sugar transporter	K03483 mtlR; mannitol operon transcriptional activator 
C    Others
D      CWI35_05695 transcriptional regulator	K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor 
D      CWI35_07345 cytosolic protein	K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor 
D      CWI35_03095 PucR family transcriptional regulator	K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein 
D      CWI35_10345 AbrB/MazE/SpoVT family DNA-binding domain-containing protein	K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes 
D      CWI35_10245 spoVT; stage V sporulation protein T	K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T 
D      CWI35_10590 noc; nucleoid occlusion protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      CWI35_10600 chromosome partitioning protein ParB	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      CWI35_17650 glycerol-3-phosphate responsive antiterminator	K02443 glpP; glycerol uptake operon antiterminator 
D      CWI35_16465 arginine repressor	K03402 argR; transcriptional regulator of arginine metabolism 
D      CWI35_15865 HrcA family transcriptional regulator	K03705 hrcA; heat-inducible transcriptional repressor 
D      CWI35_07100 tenA; thiaminase II	K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] 
D      CWI35_07080 thiamine phosphate synthase	K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] 
D      CWI35_10035 CtsR family transcriptional regulator	K03708 ctsR; transcriptional regulator of stress and heat shock response 
D      CWI35_00410 phenylacetic acid degradation operon negative regulatory protein PaaX	K02616 paaX; phenylacetic acid degradation operon negative regulatory protein 
D      CWI35_00250 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX	K02616 paaX; phenylacetic acid degradation operon negative regulatory protein 
D      CWI35_12680 hypothetical protein	K05311 cggR; central glycolytic genes regulator 
D      CWI35_17355 trp RNA-binding attenuation protein MtrB	K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) 
D      CWI35_04520 bifunctional pyrimidine operon transcriptional regulator/uracil phosphoribosyltransferase	K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] 
D      CWI35_10960 RsfA family transcriptional regulator	K06314 rsfA; prespore-specific regulator 
D      CWI35_15415 RsfA family transcriptional regulator	K06314 rsfA; prespore-specific regulator 
D      CWI35_06455 transcriptional regulator	K07734 paiB; transcriptional regulator 
D      CWI35_14585 nrdR; transcriptional regulator NrdR	K07738 nrdR; transcriptional repressor NrdR 
D      CWI35_08165 transcriptional regulator	K09683 hutP; hut operon positive regulatory protein 
D      CWI35_06775 competence protein ComK	K02250 comK; competence protein ComK 
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#Last updated: June 7, 2024
#<br>Classification taken and modified from <a href="http://www.gene-regulation.com/pub/databases.html#transfac">TRANSFAC 7.0</a>