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Transfer RNA Biogenesis - Brucella canis RM6/66
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D DK60_772 ribonuclease T2 family protein K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D DK60_1197 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK60_1069 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK60_884 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DK60_3073 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DK60_1798 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DK60_935 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DK60_819 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D DK60_1246 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DK60_1122 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DK60_943 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DK60_747 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DK60_1000 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DK60_3061 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DK60_53 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DK60_54 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DK60_979 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DK60_247 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D DK60_1106 threonyl and Alanyl tRNA synthetase second additional domain protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
C AARS associated factors
D DK60_1217 hit-like protein involved in cell-cycle regulation K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D DK60_88 methyltransferase family protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D DK60_2718 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D DK60_94 truB; tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D DK60_983 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D DK60_491 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DK60_1423 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DK60_2036 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D DK60_2035 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D DK60_295 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D DK60_2708 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D DK60_275 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D DK60_227 3'-5' exonuclease family protein K03684 rnd; ribonuclease D [EC:3.1.13.5]
D DK60_818 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D DK60_772 ribonuclease T2 family protein K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D DK60_192 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D DK60_1798 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DK60_2485 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D DK60_884 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D DK60_979 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DK60_247 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D DK60_1122 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DK60_3073 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DK60_1246 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DK60_1000 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DK60_943 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DK60_819 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DK60_488 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DK60_490 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DK60_747 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DK60_1197 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK60_1069 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK60_935 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DK60_53 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DK60_54 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DK60_3061 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DK60_1659 tRNA synthetases class I (E and Q), catalytic domain protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D DK60_2585 DNA-binding protein, putative K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D DK60_1106 threonyl and Alanyl tRNA synthetase second additional domain protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D DK60_3076 codA; cytidine and deoxycytidylate deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D DK60_922 dusA; tRNA dihydrouridine synthase A family protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
C Methylthiotransferases
D DK60_81 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D DK60_1916 radical SAM methylthiotransferase, MiaB/RimO family protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
C Methyltransferases
D DK60_1241 RNA methyltransferase, TrmH, group 1 family protein K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D DK60_952 trmFO; m(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D DK60_88 methyltransferase family protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D DK60_1900 trmD; tRNA (guanine(37)-N(1))-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D DK60_2036 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D DK60_1563 spoU rRNA Methylase family protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D DK60_255 RNA 2'-O ribose methyltransferase substrate binding family protein K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D DK60_2718 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D DK60_94 truB; tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D DK60_1602 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D DK60_892 PP-loop family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D DK60_2008 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DK60_993 sufA; FeS assembly scaffold SufA K13628 iscA; iron-sulfur cluster assembly protein
D DK60_983 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DK60_738 aminomethyltransferase folate-binding domain protein K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D DK60_2035 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D DK60_1423 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DK60_1146 queA; tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D DK60_1949 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D DK60_1950 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D DK60_1951 queE; 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D DK60_1230 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D DK60_2728 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D DK60_1032 tRNA-guanine transglycosylase family protein K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D DK60_1145 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D DK60_1700 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D DK60_78 yeaZ; tRNA threonylcarbamoyl adenosine modification protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D DK60_491 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DK60_1875 tRNA threonylcarbamoyl adenosine modification protein YgjD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
B tRNA degradation factors
C DK60_2316 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C DK60_96 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024