+F Repair protein KO #

  DNA Repair and Recombination Proteins - Burkholderia cenocepacia DDS 22E-1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DM39_4659 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DM39_2645 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DM39_6629 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DM39_2260 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DM39_337 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DM39_2867 DNA-3-methyladenine glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E DM39_2889 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DM39_2438 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E DM39_3493 DEAD_2 family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DM39_385 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM39_4818 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM39_4621 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM39_1629 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM39_1952 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM39_2601 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DM39_4659 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DM39_2645 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DM39_6629 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DM39_3257 ada; bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DM39_6633 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DM39_2260 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DM39_337 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DM39_7032 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E DM39_2105 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E DM39_3256 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E DM39_2153 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E DM39_4658 hypothetical protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E DM39_2867 DNA-3-methyladenine glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E DM39_2889 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DM39_52 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DM39_2890 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E DM39_2438 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DM39_3204 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E DM39_2218 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E DM39_2189 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E DM39_2087 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E DM39_4276 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E DM39_2871 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E DM39_7127 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E DM39_2303 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E DM39_981 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E DM39_1335 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DM39_4276 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E DM39_2087 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DM39_156 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F DM39_157 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F DM39_190 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F DM39_830 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F DM39_1915 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DM39_2162 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E DM39_576 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E DM39_2629 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E DM39_4271 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E DM39_2424 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DM39_3274 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DM39_2553 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E DM39_464 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DM39_1854 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DM39_839 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DM39_1954 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DM39_1161 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DM39_1789 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E DM39_2087 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E DM39_1335 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DM39_2869 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DM39_1092 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E DM39_1091 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E DM39_1093 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E DM39_2739 recA; protein RecA K03553 recA; recombination protein RecA E DM39_498 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DM39_497 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DM39_499 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E DM39_2 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E DM39_1835 putative primosomal replication protein n K02686 priB; primosomal replication protein N E DM39_6645 tyrosine kinase family protein K04067 priC; primosomal replication protein N'' D RecFOR pathway proteins E DM39_2739 recA; protein RecA K03553 recA; recombination protein RecA E DM39_2100 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E DM39_532 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DM39_2189 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DM39_974 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E DM39_1787 recR; recombination protein RecR K06187 recR; recombination protein RecR E DM39_552 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E DM39_498 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DM39_497 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DM39_499 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E DM39_7046 Ku protein K10979 ku; DNA end-binding protein Ku E DM39_7047 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DM39_876 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DM39_3275 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F DM39_3339 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DM39_2189 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DM39_974 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F DM39_1787 recR; recombination protein RecR K06187 recR; recombination protein RecR F DM39_2087 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F DM39_501 bacterial regulatory , Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F DM39_1371 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F DM39_884 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F DM39_158 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DM39_2871 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F DM39_7127 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F DM39_2303 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F DM39_5169 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F DM39_5825 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F DM39_4168 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F DM39_56 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F DM39_87 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F DM39_6880 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F DM39_6591 H-NS histone family protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DM39_2215 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D DM39_2739 recA; protein RecA K03553 recA; recombination protein RecA D DM39_1568 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D DM39_552 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DM39_4861 DNA polymerase family B, exonuclease domain protein K02336 polB; DNA polymerase II [EC:2.7.7.7] D DM39_2920 putative cell division inhibitor protein K14160 imuA; protein ImuA D DM39_2919 impB/mucB/samB family protein K14161 imuB; protein ImuB D DM39_2918 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D DM39_2869 ssb; single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein D DM39_2738 recX family protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D DM39_3653 PHP domain protein K02347 polX; DNA polymerase (family X) C DNA helicases D DM39_37 hypothetical protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D DM39_1757 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D DM39_3693 DEAD/H associated family protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D DM39_385 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM39_4818 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM39_4621 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM39_1629 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM39_1952 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DM39_2601 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DM39_408 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DM39_409 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024