+F Repair protein KO #

  DNA Repair and Recombination Proteins - Burkholderia cepacia ATCC 25416

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D APZ15_27175 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D APZ15_00715 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D APZ15_16140 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E APZ15_06200 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E APZ15_01740 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E APZ15_01850 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E APZ15_16990 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E APZ15_31840 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D APZ15_19235 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APZ15_06430 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APZ15_31335 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APZ15_12895 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APZ15_14870 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APZ15_00490 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D APZ15_27175 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D APZ15_00715 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D APZ15_03765 AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D APZ15_16140 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E APZ15_06200 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E APZ15_01745 DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E APZ15_15180 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E APZ15_15385 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E APZ15_03760 3-methyladenine DNA glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E APZ15_25285 adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E APZ15_01740 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E APZ15_01850 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E APZ15_04780 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E APZ15_01855 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E APZ15_16990 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E APZ15_15970 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E APZ15_03440 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E APZ15_15825 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E APZ15_15090 ligA; aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E APZ15_19905 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E APZ15_01760 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A E APZ15_35020 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E APZ15_16365 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E APZ15_09420 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E APZ15_11050 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E APZ15_38120 DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E APZ15_19905 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E APZ15_15090 ligA; aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F APZ15_05295 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F APZ15_05300 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F APZ15_05465 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F APZ15_08670 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F APZ15_14685 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E APZ15_15690 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E APZ15_07415 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E APZ15_00630 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E APZ15_19880 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E APZ15_16915 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E APZ15_03845 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E APZ15_00160 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E APZ15_06855 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E APZ15_14410 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E APZ15_08715 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E APZ15_14890 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E APZ15_10125 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E APZ15_14090 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E APZ15_15090 ligA; aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E APZ15_11050 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E APZ15_38120 DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E APZ15_01750 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E APZ15_15470 restriction endonuclease subunit M K06223 dam; DNA adenine methylase [EC:2.1.1.72] E APZ15_34900 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E APZ15_09775 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E APZ15_09770 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E APZ15_09780 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E APZ15_01140 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E APZ15_07020 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E APZ15_07015 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E APZ15_07025 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E APZ15_04485 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E APZ15_14315 primosomal replication protein N K02686 priB; primosomal replication protein N D RecFOR pathway proteins E APZ15_01140 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E APZ15_15155 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E APZ15_07205 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E APZ15_03895 AAA family ATPase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E APZ15_15825 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E APZ15_09385 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E APZ15_14080 recR; recombination protein RecR K06187 recR; recombination protein RecR E APZ15_07300 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E APZ15_36940 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E APZ15_07020 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E APZ15_07015 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E APZ15_07025 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E APZ15_36525 DNA-binding protein K10979 ku; DNA end-binding protein Ku E APZ15_36520 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F APZ15_08900 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F APZ15_03850 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F APZ15_04270 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F APZ15_37680 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F APZ15_15825 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F APZ15_09385 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F APZ15_14080 recR; recombination protein RecR K06187 recR; recombination protein RecR F APZ15_15090 ligA; aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F APZ15_07035 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F APZ15_11235 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F APZ15_08940 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F APZ15_05305 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F APZ15_01760 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A F APZ15_35020 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F APZ15_16365 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F APZ15_24070 H-NS histone K03746 hns; DNA-binding protein H-NS F APZ15_37555 histone K03746 hns; DNA-binding protein H-NS F APZ15_04800 H-NS histone K03746 hns; DNA-binding protein H-NS F APZ15_04970 H-NS histone K03746 hns; DNA-binding protein H-NS F APZ15_33700 histone K03746 hns; DNA-binding protein H-NS F APZ15_38365 histone K03746 hns; DNA-binding protein H-NS F APZ15_38390 histone K03746 hns; DNA-binding protein H-NS F APZ15_34230 DNA-binding protein K03746 hns; DNA-binding protein H-NS F APZ15_23320 H-NS histone K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D APZ15_15955 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D APZ15_01140 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D APZ15_12545 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D APZ15_07300 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D APZ15_25770 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D APZ15_02025 recombinase RecA K14160 imuA; protein ImuA D APZ15_38375 cell division protein K14160 imuA; protein ImuA D APZ15_02020 DNA polymerase K14161 imuB; protein ImuB D APZ15_38380 DNA polymerase K14161 imuB; protein ImuB D APZ15_02015 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D APZ15_37550 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D APZ15_38385 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D APZ15_01750 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D APZ15_01135 recombinase RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D APZ15_17905 phosphoesterase K02347 polX; DNA polymerase (family X) C DNA helicases D APZ15_04690 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D APZ15_13925 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D APZ15_18140 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D APZ15_19235 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APZ15_06430 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APZ15_31335 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APZ15_12895 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APZ15_14870 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D APZ15_00490 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D APZ15_06540 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D APZ15_06545 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024