+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus cereus G9842

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BCG9842_B3280 ogt1; methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BCG9842_B2075 deoxyribodipyrimidine photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BCG9842_B5430 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BCG9842_B4408 methylpurine-DNA glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BCG9842_B4799 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BCG9842_B3742 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BCG9842_B2158 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B2190 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B4678 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B5682 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B4760 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B3516 phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B2603 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B0330 mutTA; antimutator 8-oxo-(dGTP/GTP)ase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B2611 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_A0047 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BCG9842_B3280 ogt1; methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BCG9842_B1459 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D BCG9842_B2642 transcriptional regulator, AraC family K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D BCG9842_B1458 ogt2; methylated-DNA--protein-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BCG9842_B2075 deoxyribodipyrimidine photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BCG9842_B5430 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BCG9842_B3760 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BCG9842_B4833 endonuclease III domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BCG9842_B1457 alkA; DNA-3-methyladenine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BCG9842_B4408 methylpurine-DNA glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BCG9842_B4799 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BCG9842_B0542 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BCG9842_B3742 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BCG9842_B1460 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BCG9842_B0834 nfo; deoxyribonuclease IV (phage-T(4)-induced) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E BCG9842_B0707 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BCG9842_B4968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BCG9842_B0541 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BCG9842_B5672 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E BCG9842_B5671 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E BCG9842_B0607 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E BCG9842_B4969 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BCG9842_B4227 helicase, UvrD/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BCG9842_B2469 UvrD/Rep helicase family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BCG9842_B4063 ATP-dependent DNA helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BCG9842_0092 helicase, UvrD/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BCG9842_B0541 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BCG9842_B4968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BCG9842_B5203 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BCG9842_B5202 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BCG9842_B5168 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BCG9842_B5490 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F BCG9842_B1274 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BCG9842_B5258 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BCG9842_B1431 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E BCG9842_B0576 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 E BCG9842_B1760 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BCG9842_B1432 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BCG9842_B0944 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BCG9842_B0945 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BCG9842_B0523 dnaE_1; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BCG9842_A0045 dnaE_2; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BCG9842_B1328 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E BCG9842_B2604 dnaN2; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BCG9842_B5318 dnaN1; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BCG9842_0186 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BCG9842_B0794 holA_1; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BCG9842_0043 holA_2; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BCG9842_B5280 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BCG9842_0093 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BCG9842_B1597 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BCG9842_B5294 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E BCG9842_0015 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BCG9842_B4968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BCG9842_B4969 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BCG9842_B4227 helicase, UvrD/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BCG9842_B2469 UvrD/Rep helicase family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BCG9842_B4063 ATP-dependent DNA helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BCG9842_0092 helicase, UvrD/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BCG9842_B3142 ssb2; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BCG9842_B5335 ssb1; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BCG9842_A0065 single-strand binding protein, putative K03111 ssb; single-strand DNA-binding protein E BCG9842_0242 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein E BCG9842_0061 DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BCG9842_B0722 putative helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BCG9842_B1421 recA; protein RecA K03553 recA; recombination protein RecA E BCG9842_B0695 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BCG9842_B0696 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BCG9842_B1276 priA; primosomal protein N` K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BCG9842_B2998 putative exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E BCG9842_B2999 putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BCG9842_B1421 recA; protein RecA K03553 recA; recombination protein RecA E BCG9842_B5223 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BCG9842_B5316 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E BCG9842_B1289 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BCG9842_B0707 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BCG9842_B0821 recO; recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) E BCG9842_B5292 recR; recombination protein RecR K06187 recR; recombination protein RecR E BCG9842_B0950 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BCG9842_B3738 recU; recombination protein U K03700 recU; recombination protein U E BCG9842_B0695 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BCG9842_B0696 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E BCG9842_B4148 addA; ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E BCG9842_B4149 addB; ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E BCG9842_B2998 putative exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E BCG9842_B2999 putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BCG9842_B4474 Ku protein K10979 ku; DNA end-binding protein Ku D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BCG9842_B5314 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BCG9842_B5315 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BCG9842_B1312 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BCG9842_B2983 hup2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F BCG9842_B3779 hup1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F BCG9842_B1474 hup3; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F BCG9842_0074 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BCG9842_B0707 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BCG9842_B0821 recO; recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) F BCG9842_B5292 recR; recombination protein RecR K06187 recR; recombination protein RecR F BCG9842_B4968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BCG9842_B3805 recQ1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BCG9842_B2466 recQ2; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BCG9842_B5672 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F BCG9842_B5671 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BCG9842_B0979 putative DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BCG9842_0140 DNA-damage repair protein K03502 umuC; DNA polymerase V C Other SOS response factors D BCG9842_B1421 recA; protein RecA K03553 recA; recombination protein RecA D BCG9842_B1503 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BCG9842_B1516 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BCG9842_B0950 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BCG9842_B3142 ssb2; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BCG9842_B5335 ssb1; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BCG9842_A0065 single-strand binding protein, putative K03111 ssb; single-strand DNA-binding protein D BCG9842_0242 single-strand binding protein family K03111 ssb; single-strand DNA-binding protein D BCG9842_B4804 recX domain protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D BCG9842_B0575 PHP domain protein K02347 polX; DNA polymerase (family X) C DNA helicases D BCG9842_B3747 putative DnaQ family exonuclease/DinG family helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BCG9842_B3725 conserved hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D BCG9842_B2158 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B2190 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B4678 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B5682 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B4760 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B3516 phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B2603 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B0330 mutTA; antimutator 8-oxo-(dGTP/GTP)ase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_B2611 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BCG9842_A0047 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BCG9842_B3938 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BCG9842_B3937 nrdF; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D BCG9842_B0520 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024