+E Transcription factors KO
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Transcription Factors - Cytobacillus dafuensis
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D FSZ17_03455 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D FSZ17_06410 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D FSZ17_22725 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D FSZ17_02485 helix-turn-helix transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D FSZ17_02535 methylphosphotriester-DNA--protein-cysteine methyltransferase family protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D FSZ17_04950 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D FSZ17_17305 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D FSZ17_19835 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D FSZ17_04700 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D FSZ17_21835 spoIIID; sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D FSZ17_03625 helix-turn-helix transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D FSZ17_16235 helix-turn-helix transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D FSZ17_04225 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D FSZ17_17775 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D FSZ17_10195 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D FSZ17_22925 GntR family transcriptional regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D FSZ17_17480 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D FSZ17_01700 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D FSZ17_06855 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D FSZ17_12235 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D FSZ17_15780 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D FSZ17_13585 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D FSZ17_19595 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D FSZ17_17190 TetR/AcrR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D FSZ17_01830 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D FSZ17_19925 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D FSZ17_22130 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
D FSZ17_01380 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D FSZ17_17130 response regulator transcription factor K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D FSZ17_05520 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D FSZ17_22605 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D FSZ17_22970 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D FSZ17_07665 HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D FSZ17_08780 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D FSZ17_17125 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D FSZ17_19530 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D FSZ17_22805 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D FSZ17_10385 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D FSZ17_07445 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D FSZ17_11180 MerR family transcriptional regulator K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene
C Fur family
D FSZ17_15345 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D FSZ17_16145 transcriptional repressor K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D FSZ17_06595 perR; peroxide-responsive transcriptional repressor PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D FSZ17_13600 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D FSZ17_12795 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D FSZ17_22380 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D FSZ17_22775 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D FSZ17_22910 yeiL; transcriptional regulator YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D FSZ17_16610 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D FSZ17_20720 winged helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D FSZ17_20315 winged helix-turn-helix transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D FSZ17_02575 winged helix-turn-helix transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D FSZ17_07045 winged helix-turn-helix transcriptional regulator K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
D FSZ17_05565 helix-turn-helix domain-containing protein K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D FSZ17_05600 helix-turn-helix domain-containing protein K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D FSZ17_07820 helix-turn-helix domain-containing protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D FSZ17_01110 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D FSZ17_19510 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D FSZ17_19975 helix-turn-helix transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D FSZ17_20035 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D FSZ17_22690 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D FSZ17_14520 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D FSZ17_14830 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D FSZ17_04575 hypothetical protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D FSZ17_07055 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D FSZ17_13340 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D FSZ17_15845 GbsR/MarR family transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D FSZ17_01340 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D FSZ17_01740 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D FSZ17_00275 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D FSZ17_01715 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D FSZ17_20190 PAS domain-containing protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D FSZ17_06945 hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA
D FSZ17_10530 carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D FSZ17_13755 sugar diacid utilization regulator SdaR K02647 cdaR; carbohydrate diacid regulator
D FSZ17_14230 PAS domain S-box protein K06714 rocR; arginine utilization regulatory protein
D FSZ17_18805 PAS domain S-box protein K06714 rocR; arginine utilization regulatory protein
D FSZ17_03350 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D FSZ17_09850 codY; GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor
D FSZ17_05745 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D FSZ17_01905 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D FSZ17_02510 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D FSZ17_12525 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D FSZ17_21105 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D FSZ17_03215 CopG family ribbon-helix-helix protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D FSZ17_05880 PRD domain-containing protein K26932 sacT; sacPA operon transcriptional antiterminator
C Others
D FSZ17_20065 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D FSZ17_18765 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D FSZ17_00220 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D FSZ17_00320 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D FSZ17_23185 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D FSZ17_23195 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D FSZ17_04025 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D FSZ17_12710 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D FSZ17_15675 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D FSZ17_16365 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D FSZ17_11480 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D FSZ17_00535 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D FSZ17_10685 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D FSZ17_20885 hypothetical protein K05311 cggR; central glycolytic genes regulator
D FSZ17_08160 BMP family ABC transporter substrate-binding protein K05519 med; transcriptional activator of comK gene
D FSZ17_14975 mtrB; trp RNA-binding attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D FSZ17_09505 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D FSZ17_22225 RsfA family transcriptional regulator K06314 rsfA; prespore-specific regulator
D FSZ17_20075 transcriptional regulator SplA K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D FSZ17_17370 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D FSZ17_07850 transcriptional regulator K02250 comK; competence protein ComK
D FSZ17_21735 hypothetical protein K02250 comK; competence protein ComK
D FSZ17_09340 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0