+E Transcription factors KO
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Transcription Factors - Phocaeicola dorei HS1_L_1_B_010
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D EL88_17785 transcriptional regulator K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D EL88_06960 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D EL88_08720 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D EL88_09230 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D EL88_15290 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D EL88_21290 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D EL88_12470 AraC family transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D EL88_09220 DNA-binding protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D EL88_03480 transcriptional regulator K07506 K07506; AraC family transcriptional regulator
C LysR family
D EL88_24675 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
C DeoR family
C LacI family
D EL88_08695 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EL88_23585 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
C TetR/AcrR family
D EL88_09985 histidine kinase K09017 rutR; TetR/AcrR family transcriptional regulator
C Lrp/AsnC family
D EL88_17535 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D EL88_01470 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D EL88_06775 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
C MerR family
C Fur family
D EL88_05360 transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D EL88_03055 iron transporter K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D EL88_04895 Fur family transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D EL88_10755 Crp/Fnr family transcriptional regulator K21556 malR; CRP/FNR family transcriptional regulator, polysaccharide utilization system transcription regulator
C Rrf2 family
C ArsR family
C XRE family
C PadR family
D EL88_07185 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D EL88_16375 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D EL88_20450 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D EL88_18640 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D EL88_11325 XRE family transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D EL88_01595 HigA family addiction module antidote protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D EL88_01715 regulatory protein K21557 susR; HTH-type transcriptional regulator, polysaccharide utilization system transcription regulator
D EL88_20115 REX family transcriptional regulator K01926 rex; redox-sensing transcriptional repressor
D EL88_01090 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D EL88_10965 proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D EL88_08425 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D EL88_14195 chromosomal partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D EL88_16595 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D EL88_17710 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D EL88_22330 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D EL88_07925 transcriptional regulator K07735 algH; putative transcriptional regulator
D EL88_08730 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D EL88_01850 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0