+F Repair protein KO #

  DNA Repair and Recombination Proteins - Barrientosiimonas endolithica

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D GCM100_03080 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GCM100_10020 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E GCM100_13100 ung_1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GCM100_30820 ung_2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GCM100_19950 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E GCM100_02080 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E GCM100_04130 putative DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D GCM100_07370 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GCM100_14740 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D GCM100_03080 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D GCM100_10020 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E GCM100_13100 ung_1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GCM100_30820 ung_2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E GCM100_03070 DNA-3-methyladenine glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E GCM100_19950 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E GCM100_23510 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GCM100_36920 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E GCM100_07020 nei_1; endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E GCM100_11570 nei_2; putative endonuclease 8 2 K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E GCM100_02080 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E GCM100_27740 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E GCM100_32540 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E GCM100_08720 end; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E GCM100_09690 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E GCM100_18720 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E GCM100_18310 hypothetical protein K03701 uvrA; excinuclease ABC subunit A E GCM100_18380 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E GCM100_18290 hypothetical protein K03703 uvrC; excinuclease ABC subunit C E GCM100_07960 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GCM100_07990 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GCM100_27650 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GCM100_18720 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E GCM100_09690 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F GCM100_05960 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F GCM100_05970 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F GCM100_06510 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F GCM100_19290 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F GCM100_28860 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E GCM100_06970 hypothetical protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E GCM100_06960 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E GCM100_12850 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E GCM100_35930 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E GCM100_11950 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E GCM100_02490 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E GCM100_14090 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E GCM100_01650 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E GCM100_09690 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E GCM100_07960 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GCM100_07990 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GCM100_27650 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E GCM100_10390 hypothetical protein K03111 ssb; single-strand DNA-binding protein E GCM100_19910 hypothetical protein K03111 ssb; single-strand DNA-binding protein E GCM100_35550 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E GCM100_34550 hypothetical protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E GCM100_34570 hypothetical protein K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E GCM100_34530 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E GCM100_11690 recA; protein RecA K03553 recA; recombination protein RecA E GCM100_17330 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E GCM100_17320 hypothetical protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GCM100_17340 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E GCM100_16710 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E GCM100_11690 recA; protein RecA K03553 recA; recombination protein RecA E GCM100_03470 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E GCM100_35950 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E GCM100_23590 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E GCM100_21210 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E GCM100_01670 recR; recombination protein RecR K06187 recR; recombination protein RecR E GCM100_19810 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E GCM100_17330 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E GCM100_17320 hypothetical protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E GCM100_17340 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E GCM100_16710 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 E GCM100_01630 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E GCM100_03130 ku; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku E GCM100_03120 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F GCM100_14540 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GCM100_36010 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F GCM100_14430 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GCM100_36000 hypothetical protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F GCM100_02430 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F GCM100_00890 hup1; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta F GCM100_23750 hypothetical protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F GCM100_21210 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F GCM100_01670 recR; recombination protein RecR K06187 recR; recombination protein RecR F GCM100_09690 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F GCM100_15340 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F GCM100_18310 hypothetical protein K03701 uvrA; excinuclease ABC subunit A F GCM100_18380 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D GCM100_14400 dinB_1; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D GCM100_15360 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D GCM100_32750 dinB_2; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D GCM100_11690 recA; protein RecA K03553 recA; recombination protein RecA D GCM100_19810 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D GCM100_14380 hypothetical protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D GCM100_10390 hypothetical protein K03111 ssb; single-strand DNA-binding protein D GCM100_19910 hypothetical protein K03111 ssb; single-strand DNA-binding protein D GCM100_35550 hypothetical protein K03111 ssb; single-strand DNA-binding protein D GCM100_11700 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D GCM100_11940 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D GCM100_07370 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D GCM100_31600 putative hydrolase MutT/NUDIX K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D GCM100_19720 hypothetical protein K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D GCM100_14740 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D GCM100_02780 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GCM100_12120 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D GCM100_02770 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024